Lag0035219 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0035219
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	1-deoxy-D-xylulose 5-phosphate synthase family protein
Location	chr3: 16816315 .. 16816902 (-)
RNA-Seq Expression	Lag0035219
Synteny	Lag0035219

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCACAACCCACGATAGTACCATTTCAGTAGAGAGGGTTATGCTTCTCTACAGTATCATGAAGGGGTTGGAGATAAATATAGGGAGCATCATCAGAGAAGAGATCCTTTCATGTGGAAGGAAGAGAGCGGGGAAACTGTTCTTTGGGTCACTTATAACCCAATTATGTCAGAGGGTGAAGATAGTTCCTGGAAAAGATGAAGAGCTCCACTTTTTCAGGCCCACAATTGACTTACCCCTGATTGGAAATCTTCAACATAACAACGCTCAAAGGAAGGACAAGGCTTCCACTTCCCAAGGTACTCCACCTTCAGGGCTGAATCCTATTTCAAGGCCTACACCATCATCAGAGGCCCTTGAATTTGTCTTCCGACAGCTAGACCAGATTGAAGACAAGTTGAAAACTTACTGGGTCAATGCTACGGAAAGAGAAGAAGCAATTAGAGAGTTTTACCTCTCTATCGCCCCTAGCATCGCCCCTGTGTTCCCTGACTTCCCTCAATCCCTGCTGCCTCAAGAAGAAAAAGAATCTGAAGGTGAAGATGAAGATGAAAGAGATAAAGAGAGTTCCTCGGATGAGAAATAG

mRNA sequence

ATGCCCACAACCCACGATAGTACCATTTCAGTAGAGAGGGTTATGCTTCTCTACAGTATCATGAAGGGGTTGGAGATAAATATAGGGAGCATCATCAGAGAAGAGATCCTTTCATGTGGAAGGAAGAGAGCGGGGAAACTGTTCTTTGGGTCACTTATAACCCAATTATGTCAGAGGGTGAAGATAGTTCCTGGAAAAGATGAAGAGCTCCACTTTTTCAGGCCCACAATTGACTTACCCCTGATTGGAAATCTTCAACATAACAACGCTCAAAGGAAGGACAAGGCTTCCACTTCCCAAGGTACTCCACCTTCAGGGCTGAATCCTATTTCAAGGCCTACACCATCATCAGAGGCCCTTGAATTTGTCTTCCGACAGCTAGACCAGATTGAAGACAAGTTGAAAACTTACTGGGTCAATGCTACGGAAAGAGAAGAAGCAATTAGAGAGTTTTACCTCTCTATCGCCCCTAGCATCGCCCCTGTGTTCCCTGACTTCCCTCAATCCCTGCTGCCTCAAGAAGAAAAAGAATCTGAAGGTGAAGATGAAGATGAAAGAGATAAAGAGAGTTCCTCGGATGAGAAATAG

Coding sequence (CDS)

ATGCCCACAACCCACGATAGTACCATTTCAGTAGAGAGGGTTATGCTTCTCTACAGTATCATGAAGGGGTTGGAGATAAATATAGGGAGCATCATCAGAGAAGAGATCCTTTCATGTGGAAGGAAGAGAGCGGGGAAACTGTTCTTTGGGTCACTTATAACCCAATTATGTCAGAGGGTGAAGATAGTTCCTGGAAAAGATGAAGAGCTCCACTTTTTCAGGCCCACAATTGACTTACCCCTGATTGGAAATCTTCAACATAACAACGCTCAAAGGAAGGACAAGGCTTCCACTTCCCAAGGTACTCCACCTTCAGGGCTGAATCCTATTTCAAGGCCTACACCATCATCAGAGGCCCTTGAATTTGTCTTCCGACAGCTAGACCAGATTGAAGACAAGTTGAAAACTTACTGGGTCAATGCTACGGAAAGAGAAGAAGCAATTAGAGAGTTTTACCTCTCTATCGCCCCTAGCATCGCCCCTGTGTTCCCTGACTTCCCTCAATCCCTGCTGCCTCAAGAAGAAAAAGAATCTGAAGGTGAAGATGAAGATGAAAGAGATAAAGAGAGTTCCTCGGATGAGAAATAG

Protein sequence

MPTTHDSTISVERVMLLYSIMKGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRVKIVPGKDEELHFFRPTIDLPLIGNLQHNNAQRKDKASTSQGTPPSGLNPISRPTPSSEALEFVFRQLDQIEDKLKTYWVNATEREEAIREFYLSIAPSIAPVFPDFPQSLLPQEEKESEGEDEDERDKESSSDEK

Homology

[Close]

BLAST of Lag0035219 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 86.7 bits (213), Expect = 2.5e-13
Identity = 59/203 (29.06%), Postives = 99/203 (48.77%), Query Frame = 0


Query: 1   MPTTHDSTISVERVMLLYSIMKGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRV 60
           +PTTH  T+S +R++LLYS++ G  IN+G +I  EI +C  +++G LFF SLITQLC+  
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  KIVPGKDEELHFFRPTIDLPLIGNL-QHNNAQRKDKASTSQGTPPSG----------LNP 120
           +     +EE       ID   +  + Q    +   + STS+ T  S           L  
Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEGQTELTQQPSTSRPTVASSSRANGDILQQLKA 176

Query: 121 ISRPTPSSEALEF-VFRQLDQIEDKLKTYWVNATEREEAIREFYLSIAPSIAPVFPDFPQ 180
           + +     E  ++ +   L     + + +W  + ER+ A+++   +      P FP FPQ
Sbjct: 177 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPTFPQ 236

Query: 181 SLLPQEEKESEGEDEDERDKESS 192
            LL   + E E E + +   E++
Sbjct: 237 ELLQDLDYEYEAESDKDGSNEAA 259

[Close]

BLAST of Lag0035219 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 82.4 bits (202), Expect = 4.7e-12
Identity = 53/191 (27.75%), Postives = 94/191 (49.21%), Query Frame = 0


Query: 1   MPTTHDSTISVERVMLLYSIMKGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRV 60
           +PTTH   +S +R++LL+S++ G  IN+G +I  EI +C  ++ G LFF SLIT+LC+  
Sbjct: 116 LPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNA 175

Query: 61  KIVPGKDEELHFFRPTIDLPLIGNLQHNNAQRKDKASTSQGTPPSGLNPISRPTPSSEAL 120
             +   +E+LH       + +    Q    +   + S+S+    S            +AL
Sbjct: 176 PFLV-NEEKLHNTGEIDAIAVARITQEGPTESTQQPSSSRPAAASSSRTNGDVLQQLKAL 235

Query: 121 EFVFRQLDQIEDKLKTYWVNATEREEAIREFYLSIAPSIAPVFPDFPQSLLPQEEKESEG 180
           E    Q +    + + +W  + ER+ A+++   +      P FP FPQ +L   + E E 
Sbjct: 236 EQRLSQQEHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPAFPQEILQDLDYEYEA 295

Query: 181 EDEDERDKESS 192
           E + +   E++
Sbjct: 296 ESDKDGSNEAA 305

[Close]

BLAST of Lag0035219 vs. NCBI nr
Match: KAF4375842.1 (hypothetical protein G4B88_026421 [Cannabis sativa])

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-11
Identity = 46/145 (31.72%), Postives = 76/145 (52.41%), Query Frame = 0


Query: 1    MPTTHDSTISVERVMLLYSIMKGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRV 60
            +PT+HDST+S ER+ +LY I+KG +IN+G +I +EI  C  +  GKLFF  LIT+ C+  
Sbjct: 886  LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61   KIVPGKDEELHFFRPTIDLPLIGNLQHNNAQRKDKASTSQGTPPSGLNPISRPTPSSEAL 120
             +    DE+         +P  G +     +   + + S  T  +  +P+       EAL
Sbjct: 946  NVPMLNDED--------PVPRKGVVSFEPDRAPKRTTPSTTTASTSRDPMDERLSKHEAL 1005

Query: 121  EFVFRQLDQIEDKLKTYWVNATERE 146
            +       Q+ ++L+T+W    ER+
Sbjct: 1006 Q------QQMCERLQTHWNYERERD 1016

[Close]

BLAST of Lag0035219 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 79.3 bits (194), Expect = 4.0e-11
Identity = 63/214 (29.44%), Postives = 102/214 (47.66%), Query Frame = 0


Query: 1   MPTTHDSTISVERVMLLYSIMKGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRV 60
           +PTTH  T+S +R++LL+S++ G  IN+G +I  EI +C  ++ G LFF SLIT+LC+  
Sbjct: 186 LPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNA 245

Query: 61  KIVPGKDEELHFFRPTIDLPLIGNLQHNNAQRKDKASTSQGTPPSGLNPISRPTPSSEAL 120
           +     +EE       ID   +  +    AQ     ST Q   PS   P +    S+   
Sbjct: 246 RAPFLVNEEKLHNTGEIDAIAVARI----AQEGPTESTQQ---PSSSRPAT--ASSNRTN 305

Query: 121 EFVFRQLDQIEDKL---------------------KTYWVNATEREEAIREFYLSIAPSI 180
             + +QL  +E +L                     + +W  + ER+ A+++   +     
Sbjct: 306 GDILQQLKALEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRP 365

Query: 181 APVFPDFPQSLLPQEEKESEGEDEDERDKESSSD 194
            P FP FPQ +L    K+ + E E E DK+ S++
Sbjct: 366 MPTFPAFPQEIL----KDLDYEYEAESDKDGSNE 386

[Close]

BLAST of Lag0035219 vs. NCBI nr
Match: KAE8694437.1 (hypothetical protein F3Y22_tig00110783pilonHSYRG00231 [Hibiscus syriacus])

HSP 1 Score: 78.6 bits (192), Expect = 6.8e-11
Identity = 57/190 (30.00%), Postives = 99/190 (52.11%), Query Frame = 0


Query: 1    MPTTHDSTISVERVMLLYSIMKGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRV 60
            +PT+H++T+S +R++LL+SI+ G  I++G II E    C +++A  L F +LIT LCQ+ 
Sbjct: 1373 LPTSHNTTVSCQRMLLLHSIISGRPIDVGKIIVEHAHLCLKRQASALVFPNLITALCQKK 1432

Query: 61   KIVPGKDEELHFFRPTI------DLPLIGNLQHNNAQRKDKASTSQGTPPSGLNPISRPT 120
            K+   ++E      P I       +P++  L +  A+ K+  +T+    PS   P SR T
Sbjct: 1433 KV---REEMFDEILPGIAGLNKAKIPML--LGYKEAKGKEHEATTSRAAPS---PHSRAT 1492

Query: 121  PSS--EALEFVFRQLDQIEDKLKTYWVNATEREEAIREFYLSIAPSIAPVFPDFPQSLLP 180
             ++  +A+      + Q+ +KL  Y+  A  R+  +    +   P      P FP  L+P
Sbjct: 1493 SNALKQAVHRTQEHVGQLFEKLMVYFAYAKRRDVFLTSALMEFLPHTNFTTPTFPDKLVP 1552

Query: 181  -QEEKESEGE 182
              E+ E+  E
Sbjct: 1553 LNEDAEASAE 1554

[Close]

BLAST of Lag0035219 vs. ExPASy TrEMBL
Match: A0A2P5CEY2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13
Identity = 59/203 (29.06%), Postives = 99/203 (48.77%), Query Frame = 0


Query: 1   MPTTHDSTISVERVMLLYSIMKGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRV 60
           +PTTH  T+S +R++LLYS++ G  IN+G +I  EI +C  +++G LFF SLITQLC+  
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  KIVPGKDEELHFFRPTIDLPLIGNL-QHNNAQRKDKASTSQGTPPSG----------LNP 120
           +     +EE       ID   +  + Q    +   + STS+ T  S           L  
Sbjct: 117 RAPFLVNEEKLHITGEIDAIAVARITQEGQTELTQQPSTSRPTVASSSRANGDILQQLKA 176

Query: 121 ISRPTPSSEALEF-VFRQLDQIEDKLKTYWVNATEREEAIREFYLSIAPSIAPVFPDFPQ 180
           + +     E  ++ +   L     + + +W  + ER+ A+++   +      P FP FPQ
Sbjct: 177 LEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPTFPQ 236

Query: 181 SLLPQEEKESEGEDEDERDKESS 192
            LL   + E E E + +   E++
Sbjct: 237 ELLQDLDYEYEAESDKDGSNEAA 259

[Close]

BLAST of Lag0035219 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-12
Identity = 53/191 (27.75%), Postives = 94/191 (49.21%), Query Frame = 0


Query: 1   MPTTHDSTISVERVMLLYSIMKGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRV 60
           +PTTH   +S +R++LL+S++ G  IN+G +I  EI +C  ++ G LFF SLIT+LC+  
Sbjct: 116 LPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNA 175

Query: 61  KIVPGKDEELHFFRPTIDLPLIGNLQHNNAQRKDKASTSQGTPPSGLNPISRPTPSSEAL 120
             +   +E+LH       + +    Q    +   + S+S+    S            +AL
Sbjct: 176 PFLV-NEEKLHNTGEIDAIAVARITQEGPTESTQQPSSSRPAAASSSRTNGDVLQQLKAL 235

Query: 121 EFVFRQLDQIEDKLKTYWVNATEREEAIREFYLSIAPSIAPVFPDFPQSLLPQEEKESEG 180
           E    Q +    + + +W  + ER+ A+++   +      P FP FPQ +L   + E E 
Sbjct: 236 EQRLSQQEHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPAFPQEILQDLDYEYEA 295

Query: 181 EDEDERDKESS 192
           E + +   E++
Sbjct: 296 ESDKDGSNEAA 305

[Close]

BLAST of Lag0035219 vs. ExPASy TrEMBL
Match: A0A7J6FZ22 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_026421 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 46/145 (31.72%), Postives = 76/145 (52.41%), Query Frame = 0


Query: 1    MPTTHDSTISVERVMLLYSIMKGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRV 60
            +PT+HDST+S ER+ +LY I+KG +IN+G +I +EI  C  +  GKLFF  LIT+ C+  
Sbjct: 886  LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61   KIVPGKDEELHFFRPTIDLPLIGNLQHNNAQRKDKASTSQGTPPSGLNPISRPTPSSEAL 120
             +    DE+         +P  G +     +   + + S  T  +  +P+       EAL
Sbjct: 946  NVPMLNDED--------PVPRKGVVSFEPDRAPKRTTPSTTTASTSRDPMDERLSKHEAL 1005

Query: 121  EFVFRQLDQIEDKLKTYWVNATERE 146
            +       Q+ ++L+T+W    ER+
Sbjct: 1006 Q------QQMCERLQTHWNYERERD 1016

[Close]

BLAST of Lag0035219 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-11
Identity = 63/214 (29.44%), Postives = 102/214 (47.66%), Query Frame = 0


Query: 1   MPTTHDSTISVERVMLLYSIMKGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRV 60
           +PTTH  T+S +R++LL+S++ G  IN+G +I  EI +C  ++ G LFF SLIT+LC+  
Sbjct: 186 LPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNA 245

Query: 61  KIVPGKDEELHFFRPTIDLPLIGNLQHNNAQRKDKASTSQGTPPSGLNPISRPTPSSEAL 120
           +     +EE       ID   +  +    AQ     ST Q   PS   P +    S+   
Sbjct: 246 RAPFLVNEEKLHNTGEIDAIAVARI----AQEGPTESTQQ---PSSSRPAT--ASSNRTN 305

Query: 121 EFVFRQLDQIEDKL---------------------KTYWVNATEREEAIREFYLSIAPSI 180
             + +QL  +E +L                     + +W  + ER+ A+++   +     
Sbjct: 306 GDILQQLKALEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQNNFTRP 365

Query: 181 APVFPDFPQSLLPQEEKESEGEDEDERDKESSSD 194
            P FP FPQ +L    K+ + E E E DK+ S++
Sbjct: 366 MPTFPAFPQEIL----KDLDYEYEAESDKDGSNE 386

[Close]

BLAST of Lag0035219 vs. ExPASy TrEMBL
Match: A0A6A2ZSK6 (Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110783pilonHSYRG00231 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.3e-11
Identity = 57/190 (30.00%), Postives = 99/190 (52.11%), Query Frame = 0


Query: 1    MPTTHDSTISVERVMLLYSIMKGLEINIGSIIREEILSCGRKRAGKLFFGSLITQLCQRV 60
            +PT+H++T+S +R++LL+SI+ G  I++G II E    C +++A  L F +LIT LCQ+ 
Sbjct: 1373 LPTSHNTTVSCQRMLLLHSIISGRPIDVGKIIVEHAHLCLKRQASALVFPNLITALCQKK 1432

Query: 61   KIVPGKDEELHFFRPTI------DLPLIGNLQHNNAQRKDKASTSQGTPPSGLNPISRPT 120
            K+   ++E      P I       +P++  L +  A+ K+  +T+    PS   P SR T
Sbjct: 1433 KV---REEMFDEILPGIAGLNKAKIPML--LGYKEAKGKEHEATTSRAAPS---PHSRAT 1492

Query: 121  PSS--EALEFVFRQLDQIEDKLKTYWVNATEREEAIREFYLSIAPSIAPVFPDFPQSLLP 180
             ++  +A+      + Q+ +KL  Y+  A  R+  +    +   P      P FP  L+P
Sbjct: 1493 SNALKQAVHRTQEHVGQLFEKLMVYFAYAKRRDVFLTSALMEFLPHTNFTTPTFPDKLVP 1552

Query: 181  -QEEKESEGE 182
              E+ E+  E
Sbjct: 1553 LNEDAEASAE 1554

The following BLAST results are available for this feature:

BLAST of Lag0035219 vs. NCBI nr


Match Name	E-value	Identity	Description
PON59596.1	2.5e-13	29.06	hypothetical protein PanWU01x14_158080 [Parasponia andersonii]	[more]
PON78020.1	4.7e-12	27.75	hypothetical protein PanWU01x14_023740 [Parasponia andersonii]	[more]
KAF4375842.1	3.0e-11	31.72	hypothetical protein G4B88_026421 [Cannabis sativa]	[more]
PON46472.1	4.0e-11	29.44	hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]	[more]
KAE8694437.1	6.8e-11	30.00	hypothetical protein F3Y22_tig00110783pilonHSYRG00231 [Hibiscus syriacus]	[more]

BLAST of Lag0035219 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0035219 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5CEY2	1.2e-13	29.06	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE...	[more]
A0A2P5DXM3	2.3e-12	27.75	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE...	[more]
A0A7J6FZ22	1.5e-11	31.72	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_026421 PE=4 SV=1	[more]
A0A2P5BCG4	1.9e-11	29.44	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A6A2ZSK6	3.3e-11	30.00	Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0035219.1	Lag0035219.1	mRNA