Lag0007290 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0007290
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProton_antipo_M domain-containing protein
LocationScvUqRz_1244_HRSCAF_2115: 170646 .. 171259 (+)
RNA-Seq ExpressionLag0007290
SyntenyLag0007290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGCTCGGAGCGGGGTCGACTCAATATCGAGAGACTCAGCCACCGAGGACTTTATCGCACCTTTATGTCTCCATCTCTCGAGTCGAGCTCAATCTCTGGCAGGTATTGTTTGGTCTGGAGTGCCATCCATCTTTCTGGATGATGAAGCCCTGTTTGCCAACATTTCAGATAGTTGGTGGATCGGGAATCTAACCCAGCGAAGAAAACGCCTACGACTAAGTCAGGCGCACTAGCGCACCAAGCAAGAAAACGGTGGATTGACAGGCGCACTAGTGCAATCACAAAAAGGAGCCTTCGCCTTAGTAAGCTAGCTTTGGTTGCTAAGCAAGCCTGGTTCTCCGGGCACTACGGTAGGACATGGATCGATCATGACGATAATTTACTCCTCCGTAATGTAATAGAAGAGTCACAGTCCAGTTCCCCGGGCTTTCTCCCTTCTCGACCAGACGAAGGAGATATGAATTATATTCAGGCGGGCCAAGCCCTTACCCTGTGTTCTCCCCGGGTCGGGTCGGAGGCGAAGACTGGCAAAGTTCATCAGTGGTGGGGTGTTCGTAGAAAAGAAGGCGTCGCCAAACGAGTGGCAGATTTGGATGGAGTCTCGCTTTGA

mRNA sequence

ATGCTTGCTCGGAGCGGGGTCGACTCAATATCGAGAGACTCAGCCACCGAGGACTTTATCGCACCTTTATGTCTCCATCTCTCGAGTCGAGCTCAATCTCTGGCAGGCGCACTAGCGCACCAAGCAAGAAAACGGTGGATTGACAGGCGCACTAGTGCAATCACAAAAAGGAGCCTTCGCCTTAGTAAGCTAGCTTTGGTTGCTAAGCAAGCCTGGTTCTCCGGGCACTACGGTAGGACATGGATCGATCATGACGATAATTTACTCCTCCGTAATGTAATAGAAGAGTCACAGTCCAGTTCCCCGGGCTTTCTCCCTTCTCGACCAGACGAAGGAGATATGAATTATATTCAGGCGGGCCAAGCCCTTACCCTGTGTTCTCCCCGGGTCGGGTCGGAGGCGAAGACTGGCAAAGTTCATCAGTGGTGGGGTGTTCGTAGAAAAGAAGGCGTCGCCAAACGAGTGGCAGATTTGGATGGAGTCTCGCTTTGA

Coding sequence (CDS)

ATGCTTGCTCGGAGCGGGGTCGACTCAATATCGAGAGACTCAGCCACCGAGGACTTTATCGCACCTTTATGTCTCCATCTCTCGAGTCGAGCTCAATCTCTGGCAGGCGCACTAGCGCACCAAGCAAGAAAACGGTGGATTGACAGGCGCACTAGTGCAATCACAAAAAGGAGCCTTCGCCTTAGTAAGCTAGCTTTGGTTGCTAAGCAAGCCTGGTTCTCCGGGCACTACGGTAGGACATGGATCGATCATGACGATAATTTACTCCTCCGTAATGTAATAGAAGAGTCACAGTCCAGTTCCCCGGGCTTTCTCCCTTCTCGACCAGACGAAGGAGATATGAATTATATTCAGGCGGGCCAAGCCCTTACCCTGTGTTCTCCCCGGGTCGGGTCGGAGGCGAAGACTGGCAAAGTTCATCAGTGGTGGGGTGTTCGTAGAAAAGAAGGCGTCGCCAAACGAGTGGCAGATTTGGATGGAGTCTCGCTTTGA

Protein sequence

MLARSGVDSISRDSATEDFIAPLCLHLSSRAQSLAGALAHQARKRWIDRRTSAITKRSLRLSKLALVAKQAWFSGHYGRTWIDHDDNLLLRNVIEESQSSSPGFLPSRPDEGDMNYIQAGQALTLCSPRVGSEAKTGKVHQWWGVRRKEGVAKRVADLDGVSL
Homology
[Close]
BLAST of Lag0007290 vs. NCBI nr
Match: KAF4348349.1 (hypothetical protein F8388_005381, partial [Cannabis sativa])

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-21
Identity = 54/70 (77.14%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 54  ITKRSLRLSKLALVAKQAWFSGHYGRTWIDHDDNLLLRNVIEESQSSSPGFLPSRPDEGD 113
           +T+R  RL     + KQAWFSGHYGRTWIDHD+N LLRNVIEESQSSSPGFLPSRPDEGD
Sbjct: 41  LTQRRKRLQ----LTKQAWFSGHYGRTWIDHDENGLLRNVIEESQSSSPGFLPSRPDEGD 100

Query: 114 MNYIQAGQAL 124
           MN IQAG+ L
Sbjct: 101 MNSIQAGKGL 106

[Close]
BLAST of Lag0007290 vs. NCBI nr
Match: KAF4349947.1 (hypothetical protein G4B88_002369 [Cannabis sativa])

HSP 1 Score: 82.4 bits (202), Expect = 3.9e-12
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0 

Query: 79  RTWIDHDDNLLLRNVIEESQSSSPGFLPSRPDEGDMNYIQA 120
           RTWIDHD+N LLRNVIEESQSSSPGFLPSRPDEGDMN IQA
Sbjct: 74  RTWIDHDENGLLRNVIEESQSSSPGFLPSRPDEGDMNSIQA 114

[Close]
BLAST of Lag0007290 vs. NCBI nr
Match: CAB4286136.1 (unnamed protein product [Prunus armeniaca] >CAB4316569.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 68.2 bits (165), Expect = 7.7e-08
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 1  MLARSGVDSISRDSATEDFIAPLCLHLSSRAQSLAGALAHQARKRWID 49
          MLARSGVDSISRDS TEDFIAPLCLHLSSRAQ LAG +    R  ++D
Sbjct: 1  MLARSGVDSISRDSPTEDFIAPLCLHLSSRAQPLAGIVWSGVRCIFLD 48

[Close]
BLAST of Lag0007290 vs. NCBI nr
Match: GFA42320.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-07
Identity = 42/85 (49.41%), Postives = 47/85 (55.29%), Query Frame = 0 

Query: 76  HYGRTWIDHDDNLLLRNVIEESQSSSPGFLPSRPDEGDMNYIQAGQALTLCSPRVGSEAK 135
           HYGRTWIDHD+N LL NV EESQSSS GFLPSR          +G  L     R+G    
Sbjct: 9   HYGRTWIDHDENGLLHNVREESQSSSTGFLPSR----RRYEFHSGGLLGSWLERLGIGLD 68

Query: 136 TGKVHQ-WWGVRRKEGVAKRVADLD 160
            G V Q    + R   VA R+ DLD
Sbjct: 69  VGLVSQAIIIISRSPRVALRLVDLD 89

[Close]
BLAST of Lag0007290 vs. NCBI nr
Match: GEX51079.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-06
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 76  HYGRTWIDHDDNLLLRNVIEESQSSSPGFLPSR 109
           HYGRTWIDHD+N LL NVIEESQ SS GFLPSR
Sbjct: 190 HYGRTWIDHDENRLLHNVIEESQFSSTGFLPSR 222

The following BLAST results are available for this feature:
BLAST of Lag0007290 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF4348349.12.7e-2177.14hypothetical protein F8388_005381, partial [Cannabis sativa][more]
KAF4349947.13.9e-1292.68hypothetical protein G4B88_002369 [Cannabis sativa][more]
CAB4286136.17.7e-0875.00unnamed protein product [Prunus armeniaca] >CAB4316569.1 unnamed protein product... [more]
GFA42320.12.9e-0749.41hypothetical protein [Tanacetum cinerariifolium][more]
GEX51079.11.4e-0684.85hypothetical protein [Tanacetum cinerariifolium][more]
BLAST of Lag0007290 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0007290.1Lag0007290.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion