Lag0017597.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0017597.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr5: 5823453 .. 5826648 (+)
Sequence length432
RNA-Seq ExpressionLag0017597.1
SyntenyLag0017597.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGCAGTAGCCTGAACGCGCGAACAGTAGTGGTGGGTGGTCGTTCCTCTGTTTTTCTGGCATTTCGCGTAGTGGGTAAGTGTTTAGGAGTTGTTTCTTGGTTGAATAATAAGTTTAAATGAATACCCACTGATTTTCTGAAACCCATTCAGCAAGTTCTTGGCGTAACCGGCGAGTTGGAGTAGTGGGTCTAAGAGTTTTAGCATTTGCGAAGCGATTCCTTCATTGGGTAAGTTTTGAGTGCTAAAACTTCCTTAAATCGATTAGTACCTAGAAGAGCAATGAGTTTTAGTCCTATTTAGTTTAAAGGAATTTTCCTTCTAATTTGTAGCTTGCCAAAGTCCTTGAATCAAGAAGTTTCAAGATGATTGATTTGACGATATTCAAGTCGAGGTAAGTGAACTTACTATTGAACCTTTTAATTGAGTGCGAATATTTGAGTTCCTAAAATTCTCGTGTTTAAAATAACTGATGTTCTAAAATATTCGTGTTTATGAGTCGTTCATGAATTTTATTATGATTGTTAAAAGCATGAAAATTGAGCATGGCAAATTTATTACTTTAATTACAACAAATATCACTTACGATAACATTAAAAGAACGCTATCGTAGGCTTTCCATAGTGTTTTTTGAATCGTTGTCGTAGCCGATATTATTGAAAGTCTCCAACTTTTCATAGCGTTTTTTCAACGCTAAAAAAAATTCTATAAAAATTCTGTTTCAATTGCGTAATTTTAATGTTATGGAAATTTTTCTTAGTGTTAGCAAAAAAACGCTATGATTGCCCTTTAATAGCGTTTTCAATAGCAGTAAAAAAACGCTATAAAAAGTATATCATAGCATTTTTAGACACACTGTTATAGCTGATGTTATTGAAAGTCTGACTTTTTATTGCGTTTTTCAATGCTATAGAAAAAGCTATAAAAAAGTCAAAATTTTATTGCACATTTTTAATGTTATAAAAACTTTTCAAAACGCTAGCAAAAAATGCTATGATTGCTCTTTAATAGCATTTTTTTATAATAATTAAAAATGTTATCAGAACATAATCATTTTTATCTCGTCATTATGATAGACAATATTATGGATAGTAGGTAACTTTTAATAGCATTTTTTGATAGGAGTAACTTTCAATAGCATTAATACATACACGCATACATTTGTACCATTTTTTAGTAATATGTAACAATTTCTATAACATTTTATAAGAGTACCAAATATTTTCAAATGTTATTGTAAAATAAACTCATTTATATAAACATACAATGTATTTAAATACACTTATATCAAAATAAATTTATTTTTTAGGTAAAGGCAAGGGCAGATGAAAGGCGATTGGTGAGAATCCGATAGAAAGTCATGGGAAGACTTGAGTTCATATTTTATTTTCTTCCGCGTTAAGAGCACTGCTTTACTTTATTGAAATTGTAAATTTGTTTTAAGAAAATTTCTAGAGGCTTTGTACATGTATGTTTTAGAAATTATTAAAGCTTATTTAAAATCTTTGAAATTAGGGATCCCAAATAAAAGTTTTGTTTTGAAGTTTTGGTTTAAATTATTGTTTATATTCCAAAATATTCTTATTTAAAAAGGCCTCCAAAGCATGCATTGTCGTAACGATCCCTTAAACGCTTATTAAGAAGTCGGATGATTAGGGTTATTTTAAGCAAAGACAAATATAAAATAACTAATAACTTTTAATATATCAATATTATTTCATTAATATCCGGTCAACGGTTACATTCACTATCTACGATTTTTAGGGCATAAAACCCAACAGGTTATGCCTTATTCTCTCGTATTGGTCCAAGCCATCCAGGGAAGCGGTTTTGTGGACTCGAGTATAGTTTCCATATTGTGGGATATTCGTAGTTTACTTTCTGGTTTTCAATATAGGATTAACTTTATTCATGTCAATCGTAAGTTTAATAGGGTGTCCCATGAGTTGGCATAGGTGGGCCTCCATTCCATTCCTCAAGAATGAACTTCAGTTTTTCCTAACTGGTTAATTAGTCTAAATAGTCAGGAGCGTCTCCTCTTTGTATCTCCTTGAAGAGGTTTTGTTGATTAATGAATTTGCTTCTTAAAAAAAAAAAAAAACTCTTTGAAAACTAAAAAAAAAATAGTTTTAATAGCTGGGGGTTATAATAGCTGGGGGATTATAATAGTCTGTGTTTGGGGTGCATATTATTATAGTCTGGGATAAAATAGTTTGTGTTTAGGGTGCAGATTATTATAGTCTGGGATAAAATAGTCTGTGTTTGGGGTGCAGATTATTATAGTCTGGGATAAAATAGTCTGTGTTCAAGCTGACTGTTTTTTTTTCTTGACTTTTTTTTTTTGTTTATTTTCCTCATACAACTTTGTACTTCAAATATTAATAATAAAAAAAAGTTTAGTTGTAAAAAAATTAAAAGCTTTGGGTACAGGGGTTAAATTATGTGTTTAGCTTAAAAAGAAACAAAAATAACCTAAAGTAAAGGTTGATTTTCTTTGTTTTAGAGTCATGGTTTTTTCATAAAATAAGTCATTTTATGATTTCATATAGAAAAACCATATTTGTTTCATTTATGTATTTCCAACATAAAAATGATAAATGTTTATTCAAAACTCATTTTGTCTTTATTATCAAAAGAATCAAATAAAATAGAAATCACATAAAATAAAAACTTGAGTAGTATAATTTGGAATGAAAAATACGGTACGATGAAGGTAAACATTCATATACTTCATTATCAAAAGTAAATTATGTAATAAAACTCCATATTTATATATATGTACAAAGACAACCTAGTATCTAACTCTCACTAGAAATTTTATGATTTTTCCGACGACCACCAACAAATTTTTTGGCGATCGAAAATTTTTCCCTCTTTTTTCCTTTCATTTTCTTCTACTCTTTTTTTTCTTTATTTTCGTTTTTTATATTTTTCGAAATGAAAATGAGAAGAAGATTTAAAAAAAAAAAAAAGTCGCCGAAAAAGTCGTCGGTGATTTCCAGAAAAGTGGCCGGAAAGTCGATGGTGGTCGTCGGAAAAGTCGTCGATGATTTCTGAAAAAGTGGCCAGAAAGTCGACGGCGGTCGTCGGAAAATTCGTCGGTGATTGCTGGAAAAGTGGTCGGAAAGTTGACGGCGGTCGTCGGAAAAGTTGTCGGTGGTCGCCGGAAAAGTCGTCGGTCGGTCGTCGGTAG

mRNA sequence

ATGAGTTGCAGTAGCCTGAACGCGCGAACAGTAGTGGTGGGTGGTCGTTCCTCTGTTTTTCTGGCATTTCGCGTAGTGGCAAGTTCTTGGCGTAACCGGCGAGTTGGAGTAGTGGGTCTAAGAGTTTTAGCATTTGCGAAGCGATTCCTTCATTGGCTTGCCAAAGTCCTTGAATCAAGAAGTTTCAAGATGATTGATTTGACGATATTCAAGTCGAGGATTAACTTTATTCATGTCAATCAAAAGTGGCCGGAAAGTCGATGGTGGTCGTCGGAAAAGTCGTCGATGATTTCTGAAAAAGTGGCCAGAAAGTCGACGGCGGTCGTCGGAAAATTCGTCGGTGATTGCTGGAAAAGTGGTCGGAAAGTTGACGGCGGTCGTCGGAAAAGTTGTCGGTGGTCGCCGGAAAAGTCGTCGGTCGGTCGTCGGTAG

Coding sequence (CDS)

ATGAGTTGCAGTAGCCTGAACGCGCGAACAGTAGTGGTGGGTGGTCGTTCCTCTGTTTTTCTGGCATTTCGCGTAGTGGCAAGTTCTTGGCGTAACCGGCGAGTTGGAGTAGTGGGTCTAAGAGTTTTAGCATTTGCGAAGCGATTCCTTCATTGGCTTGCCAAAGTCCTTGAATCAAGAAGTTTCAAGATGATTGATTTGACGATATTCAAGTCGAGGATTAACTTTATTCATGTCAATCAAAAGTGGCCGGAAAGTCGATGGTGGTCGTCGGAAAAGTCGTCGATGATTTCTGAAAAAGTGGCCAGAAAGTCGACGGCGGTCGTCGGAAAATTCGTCGGTGATTGCTGGAAAAGTGGTCGGAAAGTTGACGGCGGTCGTCGGAAAAGTTGTCGGTGGTCGCCGGAAAAGTCGTCGGTCGGTCGTCGGTAG

Protein sequence

MSCSSLNARTVVVGGRSSVFLAFRVVASSWRNRRVGVVGLRVLAFAKRFLHWLAKVLESRSFKMIDLTIFKSRINFIHVNQKWPESRWWSSEKSSMISEKVARKSTAVVGKFVGDCWKSGRKVDGGRRKSCRWSPEKSSVGRR
Homology
The following BLAST results are available for this feature:
BLAST of Lag0017597.1 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0017597.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..143

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0017597Lag0017597gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0017597.1.exon1Lag0017597.1.exon1exon
Lag0017597.1.exon2Lag0017597.1.exon2exon
Lag0017597.1.exon3Lag0017597.1.exon3exon
Lag0017597.1.exon4Lag0017597.1.exon4exon
Lag0017597.1.exon5Lag0017597.1.exon5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0017597.1cds.Lag0017597.1CDS
cds.Lag0017597.1cds.Lag0017597.1_2CDS
cds.Lag0017597.1cds.Lag0017597.1_3CDS
cds.Lag0017597.1cds.Lag0017597.1_4CDS
cds.Lag0017597.1cds.Lag0017597.1_5CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0017597.1Lag0017597.1-proteinpolypeptide