Lag0041209.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0041209.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Assimilatory sulfite reductase (ferredoxin)
Location	chr13: 13770539 .. 13773334 (-)
Sequence length	327
RNA-Seq Expression	Lag0041209.1
Synteny	Lag0041209.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCAAGATTGTTGCTCCGGCGCTTCCTCCTCATTTACTTCAATCCTCCAGCAGTATTGCTCCCTTCTCTACCGATTGAAGAAAACCCACGCAAGAGCCAGCGATTCCACGACCATAGGAGTCGTTTTTGTGAGTTTTGACGTTACCCAATTCGAATTAGACCTCGAATTCAATCTGGTATGTGAACTACGTAGTTTCTGAATCATATTTATTAAGTTATTCTGTTAAATTCGATTTTAGGAAATTTTTGTTCTAATTGAAGTAAAGCTTTGATAGGTTAGGATTGTTCATAGAAGAAGAAAGTGGTGGTTTTTGTGTTTACTCAGGAATAATTCTTAAATTCAATATACCCAAAGGTCATACAAAGTTAGCTATATATACCGTCACTGATTTGACAAAAATGAAAAAGGAAATTCAAACATGAAAAATAGAGAAGATACAGAGTAATTGAGGAAATACAGAACAGTTGTACCAAAAGTATGTTCCATTAGCTGCTTCTTCTTGTTGTCAAGGATTCCATTTAGCTAGTCTTAATGATTTTTACTCCACAAGTCGCTCCAGATTATTAGCAGGAGGATTTTGAATTGATGGAGAAAATTTGTGTTGGCTAATTTTCAACCTTTTGAATAATAACCAGCTTCACATAATCATATTGTGATTTGTCTGGTTTGATCCTTTGTTGTCAATGGTCTTGGTTGCCACGTGGTTGATTCTTTATGTGTTGTCATGTAGGATTTTGTGGAGTGAAAACTTTCTCCCCTGGTTTAATTTTTGTGTTGTATGCTTTCCTTTCGGCTATTTACAAGGATGATGATGTTCAATTGTGTTTCTCCTCTCTATCAGCCACCAAAATTGTGTCATGGTAGTTCTTTTGCTCACTTTAATTTTAATTTGTTAAGAGTGAAACAAATTGCTAAATTAAAATTGATTAAGAACTCACCAGAAGTTTATTTAGTAAAAAATTCTAAGTTCGTAATGCACATTAAAGATTTTACCAAACTAGTAAGTTTTGATATAGTTTTGTAGACTACTTGACATGTTTTAGGTTGATCTACTTTTTGTCTTTTCTATGGAATTTGAAAAATATTGTATTAGTATGTTCCAGGTGATAAACAATAGAAGTTGTATAAGAAATCACATAACATATTTATAGGATATATATTATAATTTGAGCAACTTTCTAGTTTCTATGGACTAGGATGATACTCGGCCCTTGGTTCTCTTGGTAGGACCAACACTGGCAAATGCTTTCCTGATTATAAGATCACTTGCAAGTTAAATATCTCATAATTTTTGGAGACATTCTTCAAAGTATTTGTTGTTTGCACTTACACTTTTTTATTTTTGTTTGTGTTGGTTAAATTTACTACGGATGAAGAATTTTGTAATCCTTCAAAGTTTATGCTATTGATACTGCTAACTCTCTGGACTCTAGAGTCCAACCCATTGGAATTAGAGTTGCAAGACAACCATAGTACATGAAGTTTTACTCTTGTGCATATTCAATAGCAAGAACTTGGCTTCAATTGCTACACCCTTTACAGACAAACAGTGGTGCCCGATCGTGAAACTTCTTGTTGAGTGTCTGACGACACGTGTTGTCACACATAATTAAAATTCTCACTTGTCTCTGGTCAGATTTTTCTTAGCAAGTAATAGTATTTTGTTAAAAATGTGTATTTCATGTTTTATTCTCTTATGTACTTTGTTCACTCTCAGAAACCTTCGTGACAATTTTCCTTTTGCTCCGAAATTTGTAGGGTTTAAAATCAGAAATTGATCAAATGTCTCCTTCACTGGGGCGTTATATGCAATTTTCTTGATAGAATCTTGTATTTAATAGCTTGCCAAGGTAATGACAAAGTTTTTACGTTAAAATTTCTATTTAGTTTTGCATTGCTCGCTATCTAACACATTTTTCACTCAAAAATCTACTTGCTCAATTTTAAATTTACGTTATACCGACAAAACTTTGCACCTAGTATAAGTCATAAAACAATTATTTGTGGTTTAATTTTAAGGTACATGACAATTCTATTTGTTCGTTTTTTTTTTTTTTTTTTTGGAAGAGAGTCAAATCAAAAGGCCAAAATTTTGAGGGTAATGCTACTAAATTTGTTATGCCACGATTGCACATTGTAAATACTATCCTACCTTGTTTTTTTTTGGTACATGACAATTCCATAACTATTTATCTTCCTTTCATCTCATAAAGGGATTATCCTTTGAGTTAGATGGGTTTGATTTTTGTCCAGATGATCTTCACAAACAATTGAAAGCTCCTCAACCGGTGTAATTTCTCACCTATAGTCTTTGAAGAAGAAACTTATTGAAAGTTTAGTTGATCTTTTGAATTTTCTTTGTTTGACTTGTTTTTTTTGTCATTGTATATTTTAAAACCTTCGAGACCGTTCTTTGTGACACAATAATTAGTATTCAGTGTACTATCTCTTCTAAAGAACGCCAGCTTGAAAAGGTCTTGAACCTTTATTTCATCATTGTAAGCGCAAGCGACACTCTAAAGAATCATTTGGAGACTTCACAAATTGCTTGGTGAATGTGTGAAGGGTCTAAAATTATGAAAAGATCTTTTGGTTATTGTCTTACTTTAATTGATAAAACTGTGGTAATTTTAATTAATCTCAGGGATTTGAGAAGCTCAAAGAGCTGGTTAGCAAATGGGATAGTCACGTGCTTGCACCAACACATTACAACCTGAAGCTTTTTGCTAATAACAATATGTACGACGCCATGGATGACCTCGTAAAGCTTCAGAATAAGAATGCTCATTAA

mRNA sequence

ATGGCGCAAGATTGTTGCTCCGGCGCTTCCTCCTCATTTACTTCAATCCTCCAGCAGTATTGCTCCCTTCTCTACCGATTGAAGAAAACCCACGCAAGAGCCAGCGATTCCACGACCATAGGAGTCGTTTTTGTGAGTTTTGACGTTACCCAATTCGAATTAGACCTCGAATTCAATCTGGGATTTGAGAAGCTCAAAGAGCTGGTTAGCAAATGGGATAGTCACGTGCTTGCACCAACACATTACAACCTGAAGCTTTTTGCTAATAACAATATGTACGACGCCATGGATGACCTCGTAAAGCTTCAGAATAAGAATGCTCATTAA

Coding sequence (CDS)

ATGGCGCAAGATTGTTGCTCCGGCGCTTCCTCCTCATTTACTTCAATCCTCCAGCAGTATTGCTCCCTTCTCTACCGATTGAAGAAAACCCACGCAAGAGCCAGCGATTCCACGACCATAGGAGTCGTTTTTGTGAGTTTTGACGTTACCCAATTCGAATTAGACCTCGAATTCAATCTGGGATTTGAGAAGCTCAAAGAGCTGGTTAGCAAATGGGATAGTCACGTGCTTGCACCAACACATTACAACCTGAAGCTTTTTGCTAATAACAATATGTACGACGCCATGGATGACCTCGTAAAGCTTCAGAATAAGAATGCTCATTAA

Protein sequence

MAQDCCSGASSSFTSILQQYCSLLYRLKKTHARASDSTTIGVVFVSFDVTQFELDLEFNLGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH

Homology

[Close]

BLAST of Lag0041209.1 vs. NCBI nr
Match: XP_022154338.1 (sulfite reductase [ferredoxin], chloroplastic [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 55  DLEFNLGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH 109
           D    LGFEKLKELV KWD  V+AP  YNLKLFA+ + Y+AMDDL KLQNKNAH
Sbjct: 570 DFTNRLGFEKLKELVEKWDGPVIAPARYNLKLFADKDTYEAMDDLAKLQNKNAH 623

[Close]

BLAST of Lag0041209.1 vs. NCBI nr
Match: XP_022988036.1 (sulfite reductase [ferredoxin], chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 80.5 bits (197), Expect = 9.9e-12
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 55  DLEFNLGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH 109
           D    LGFEKLK+LV KWD  V APTHYNL+LFA+ + Y+AMDDL ++QNKNAH
Sbjct: 622 DFTNRLGFEKLKDLVEKWDGSVPAPTHYNLRLFADKDTYEAMDDLARVQNKNAH 675

[Close]

BLAST of Lag0041209.1 vs. NCBI nr
Match: TYK18869.1 (sulfite reductase [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 9.9e-12
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 60  LGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH 109
           LGFEKLKELV KWD  VL+P  YNLKLFA+ + Y+AMDDL KLQNKNAH
Sbjct: 626 LGFEKLKELVEKWDGPVLSPARYNLKLFADKDTYEAMDDLAKLQNKNAH 674

[Close]

BLAST of Lag0041209.1 vs. NCBI nr
Match: XP_008450416.1 (PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Cucumis melo] >KAA0051215.1 sulfite reductase [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 9.9e-12
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 60  LGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH 109
           LGFEKLKELV KWD  VL+P  YNLKLFA+ + Y+AMDDL KLQNKNAH
Sbjct: 626 LGFEKLKELVEKWDGPVLSPARYNLKLFADKDTYEAMDDLAKLQNKNAH 674

[Close]

BLAST of Lag0041209.1 vs. NCBI nr
Match: KAE8653511.1 (hypothetical protein Csa_007580 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 9.9e-12
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 60  LGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH 109
           LGFEKLKELV KWD  VL+P  YNLKLFA+ + Y+AMDDL KLQNKNAH
Sbjct: 683 LGFEKLKELVEKWDGPVLSPARYNLKLFADKDTYEAMDDLAKLQNKNAH 731

[Close]

BLAST of Lag0041209.1 vs. ExPASy Swiss-Prot
Match: Q75NZ0 (Sulfite reductase [ferredoxin], chloroplastic OS=Pisum sativum OX=3888 GN=SIR PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-11
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 55  DLEFNLGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH 109
           D    LGFEKLKE + KW+   + PT +NLKLF + + Y+AMD L KLQNKNAH
Sbjct: 612 DFTVRLGFEKLKEFIEKWEGPAVPPTRHNLKLFTDKDTYEAMDGLAKLQNKNAH 665

[Close]

BLAST of Lag0041209.1 vs. ExPASy Swiss-Prot
Match: O82802 (Sulfite reductase 1 [ferredoxin], chloroplastic OS=Nicotiana tabacum OX=4097 GN=SIR1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.3e-08
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 55  DLEFNLGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH 109
           D    +GFEKL E V KW+    + + YNLKLFA+   Y+AMD L  +Q+KNAH
Sbjct: 619 DFTNRMGFEKLGEFVEKWEGIPESSSRYNLKLFADRETYEAMDALASIQDKNAH 672

The following BLAST results are available for this feature:

BLAST of Lag0041209.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154338.1	4.4e-12	70.37	sulfite reductase [ferredoxin], chloroplastic [Momordica charantia]	[more]
XP_022988036.1	9.9e-12	66.67	sulfite reductase [ferredoxin], chloroplastic-like [Cucurbita maxima]	[more]
TYK18869.1	9.9e-12	75.51	sulfite reductase [Cucumis melo var. makuwa]	[more]
XP_008450416.1	9.9e-12	75.51	PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Cucumis melo] >KAA0051...	[more]
KAE8653511.1	9.9e-12	75.51	hypothetical protein Csa_007580 [Cucumis sativus]	[more]

BLAST of Lag0041209.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q75NZ0	1.0e-11	57.41	Sulfite reductase [ferredoxin], chloroplastic OS=Pisum sativum OX=3888 GN=SIR PE...	[more]
O82802	5.3e-08	50.00	Sulfite reductase 1 [ferredoxin], chloroplastic OS=Nicotiana tabacum OX=4097 GN=...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0041209	Lag0041209	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0041209.1.exon2	Lag0041209.1.exon2	exon
Lag0041209.1.exon1	Lag0041209.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0041209.1	cds.Lag0041209.1_2	CDS
cds.Lag0041209.1	cds.Lag0041209.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0041209.1	Lag0041209.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009409	response to cold
biological_process	GO:0000103	sulfate assimilation
cellular_component	GO:0042644	chloroplast nucleoid
cellular_component	GO:0010319	stromule
cellular_component	GO:0009337	sulfite reductase complex (NADPH)
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016002	sulfite reductase activity
molecular_function	GO:0050311	sulfite reductase (ferredoxin) activity