Lag0041209 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0041209
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionAssimilatory sulfite reductase (ferredoxin)
Locationchr13: 13770539 .. 13773334 (-)
RNA-Seq ExpressionLag0041209
SyntenyLag0041209
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCAAGATTGTTGCTCCGGCGCTTCCTCCTCATTTACTTCAATCCTCCAGCAGTATTGCTCCCTTCTCTACCGATTGAAGAAAACCCACGCAAGAGCCAGCGATTCCACGACCATAGGAGTCGTTTTTGTGAGTTTTGACGTTACCCAATTCGAATTAGACCTCGAATTCAATCTGGTATGTGAACTACGTAGTTTCTGAATCATATTTATTAAGTTATTCTGTTAAATTCGATTTTAGGAAATTTTTGTTCTAATTGAAGTAAAGCTTTGATAGGTTAGGATTGTTCATAGAAGAAGAAAGTGGTGGTTTTTGTGTTTACTCAGGAATAATTCTTAAATTCAATATACCCAAAGGTCATACAAAGTTAGCTATATATACCGTCACTGATTTGACAAAAATGAAAAAGGAAATTCAAACATGAAAAATAGAGAAGATACAGAGTAATTGAGGAAATACAGAACAGTTGTACCAAAAGTATGTTCCATTAGCTGCTTCTTCTTGTTGTCAAGGATTCCATTTAGCTAGTCTTAATGATTTTTACTCCACAAGTCGCTCCAGATTATTAGCAGGAGGATTTTGAATTGATGGAGAAAATTTGTGTTGGCTAATTTTCAACCTTTTGAATAATAACCAGCTTCACATAATCATATTGTGATTTGTCTGGTTTGATCCTTTGTTGTCAATGGTCTTGGTTGCCACGTGGTTGATTCTTTATGTGTTGTCATGTAGGATTTTGTGGAGTGAAAACTTTCTCCCCTGGTTTAATTTTTGTGTTGTATGCTTTCCTTTCGGCTATTTACAAGGATGATGATGTTCAATTGTGTTTCTCCTCTCTATCAGCCACCAAAATTGTGTCATGGTAGTTCTTTTGCTCACTTTAATTTTAATTTGTTAAGAGTGAAACAAATTGCTAAATTAAAATTGATTAAGAACTCACCAGAAGTTTATTTAGTAAAAAATTCTAAGTTCGTAATGCACATTAAAGATTTTACCAAACTAGTAAGTTTTGATATAGTTTTGTAGACTACTTGACATGTTTTAGGTTGATCTACTTTTTGTCTTTTCTATGGAATTTGAAAAATATTGTATTAGTATGTTCCAGGTGATAAACAATAGAAGTTGTATAAGAAATCACATAACATATTTATAGGATATATATTATAATTTGAGCAACTTTCTAGTTTCTATGGACTAGGATGATACTCGGCCCTTGGTTCTCTTGGTAGGACCAACACTGGCAAATGCTTTCCTGATTATAAGATCACTTGCAAGTTAAATATCTCATAATTTTTGGAGACATTCTTCAAAGTATTTGTTGTTTGCACTTACACTTTTTTATTTTTGTTTGTGTTGGTTAAATTTACTACGGATGAAGAATTTTGTAATCCTTCAAAGTTTATGCTATTGATACTGCTAACTCTCTGGACTCTAGAGTCCAACCCATTGGAATTAGAGTTGCAAGACAACCATAGTACATGAAGTTTTACTCTTGTGCATATTCAATAGCAAGAACTTGGCTTCAATTGCTACACCCTTTACAGACAAACAGTGGTGCCCGATCGTGAAACTTCTTGTTGAGTGTCTGACGACACGTGTTGTCACACATAATTAAAATTCTCACTTGTCTCTGGTCAGATTTTTCTTAGCAAGTAATAGTATTTTGTTAAAAATGTGTATTTCATGTTTTATTCTCTTATGTACTTTGTTCACTCTCAGAAACCTTCGTGACAATTTTCCTTTTGCTCCGAAATTTGTAGGGTTTAAAATCAGAAATTGATCAAATGTCTCCTTCACTGGGGCGTTATATGCAATTTTCTTGATAGAATCTTGTATTTAATAGCTTGCCAAGGTAATGACAAAGTTTTTACGTTAAAATTTCTATTTAGTTTTGCATTGCTCGCTATCTAACACATTTTTCACTCAAAAATCTACTTGCTCAATTTTAAATTTACGTTATACCGACAAAACTTTGCACCTAGTATAAGTCATAAAACAATTATTTGTGGTTTAATTTTAAGGTACATGACAATTCTATTTGTTCGTTTTTTTTTTTTTTTTTTTGGAAGAGAGTCAAATCAAAAGGCCAAAATTTTGAGGGTAATGCTACTAAATTTGTTATGCCACGATTGCACATTGTAAATACTATCCTACCTTGTTTTTTTTTGGTACATGACAATTCCATAACTATTTATCTTCCTTTCATCTCATAAAGGGATTATCCTTTGAGTTAGATGGGTTTGATTTTTGTCCAGATGATCTTCACAAACAATTGAAAGCTCCTCAACCGGTGTAATTTCTCACCTATAGTCTTTGAAGAAGAAACTTATTGAAAGTTTAGTTGATCTTTTGAATTTTCTTTGTTTGACTTGTTTTTTTTGTCATTGTATATTTTAAAACCTTCGAGACCGTTCTTTGTGACACAATAATTAGTATTCAGTGTACTATCTCTTCTAAAGAACGCCAGCTTGAAAAGGTCTTGAACCTTTATTTCATCATTGTAAGCGCAAGCGACACTCTAAAGAATCATTTGGAGACTTCACAAATTGCTTGGTGAATGTGTGAAGGGTCTAAAATTATGAAAAGATCTTTTGGTTATTGTCTTACTTTAATTGATAAAACTGTGGTAATTTTAATTAATCTCAGGGATTTGAGAAGCTCAAAGAGCTGGTTAGCAAATGGGATAGTCACGTGCTTGCACCAACACATTACAACCTGAAGCTTTTTGCTAATAACAATATGTACGACGCCATGGATGACCTCGTAAAGCTTCAGAATAAGAATGCTCATTAA

mRNA sequence

ATGGCGCAAGATTGTTGCTCCGGCGCTTCCTCCTCATTTACTTCAATCCTCCAGCAGTATTGCTCCCTTCTCTACCGATTGAAGAAAACCCACGCAAGAGCCAGCGATTCCACGACCATAGGAGTCGTTTTTGTGAGTTTTGACGTTACCCAATTCGAATTAGACCTCGAATTCAATCTGGGATTTGAGAAGCTCAAAGAGCTGGTTAGCAAATGGGATAGTCACGTGCTTGCACCAACACATTACAACCTGAAGCTTTTTGCTAATAACAATATGTACGACGCCATGGATGACCTCGTAAAGCTTCAGAATAAGAATGCTCATTAA

Coding sequence (CDS)

ATGGCGCAAGATTGTTGCTCCGGCGCTTCCTCCTCATTTACTTCAATCCTCCAGCAGTATTGCTCCCTTCTCTACCGATTGAAGAAAACCCACGCAAGAGCCAGCGATTCCACGACCATAGGAGTCGTTTTTGTGAGTTTTGACGTTACCCAATTCGAATTAGACCTCGAATTCAATCTGGGATTTGAGAAGCTCAAAGAGCTGGTTAGCAAATGGGATAGTCACGTGCTTGCACCAACACATTACAACCTGAAGCTTTTTGCTAATAACAATATGTACGACGCCATGGATGACCTCGTAAAGCTTCAGAATAAGAATGCTCATTAA

Protein sequence

MAQDCCSGASSSFTSILQQYCSLLYRLKKTHARASDSTTIGVVFVSFDVTQFELDLEFNLGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH
Homology
[Close]
BLAST of Lag0041209 vs. NCBI nr
Match: XP_022154338.1 (sulfite reductase [ferredoxin], chloroplastic [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0 

Query: 55  DLEFNLGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH 109
           D    LGFEKLKELV KWD  V+AP  YNLKLFA+ + Y+AMDDL KLQNKNAH
Sbjct: 570 DFTNRLGFEKLKELVEKWDGPVIAPARYNLKLFADKDTYEAMDDLAKLQNKNAH 623

[Close]
BLAST of Lag0041209 vs. NCBI nr
Match: XP_022988036.1 (sulfite reductase [ferredoxin], chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 80.5 bits (197), Expect = 9.9e-12
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 0 

Query: 55  DLEFNLGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH 109
           D    LGFEKLK+LV KWD  V APTHYNL+LFA+ + Y+AMDDL ++QNKNAH
Sbjct: 622 DFTNRLGFEKLKDLVEKWDGSVPAPTHYNLRLFADKDTYEAMDDLARVQNKNAH 675

[Close]
BLAST of Lag0041209 vs. NCBI nr
Match: TYK18869.1 (sulfite reductase [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 9.9e-12
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 60  LGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH 109
           LGFEKLKELV KWD  VL+P  YNLKLFA+ + Y+AMDDL KLQNKNAH
Sbjct: 626 LGFEKLKELVEKWDGPVLSPARYNLKLFADKDTYEAMDDLAKLQNKNAH 674

[Close]
BLAST of Lag0041209 vs. NCBI nr
Match: XP_008450416.1 (PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Cucumis melo] >KAA0051215.1 sulfite reductase [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 9.9e-12
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 60  LGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH 109
           LGFEKLKELV KWD  VL+P  YNLKLFA+ + Y+AMDDL KLQNKNAH
Sbjct: 626 LGFEKLKELVEKWDGPVLSPARYNLKLFADKDTYEAMDDLAKLQNKNAH 674

[Close]
BLAST of Lag0041209 vs. NCBI nr
Match: KAE8653511.1 (hypothetical protein Csa_007580 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 9.9e-12
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 60  LGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH 109
           LGFEKLKELV KWD  VL+P  YNLKLFA+ + Y+AMDDL KLQNKNAH
Sbjct: 683 LGFEKLKELVEKWDGPVLSPARYNLKLFADKDTYEAMDDLAKLQNKNAH 731

[Close]
BLAST of Lag0041209 vs. ExPASy Swiss-Prot
Match: Q75NZ0 (Sulfite reductase [ferredoxin], chloroplastic OS=Pisum sativum OX=3888 GN=SIR PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-11
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 55  DLEFNLGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH 109
           D    LGFEKLKE + KW+   + PT +NLKLF + + Y+AMD L KLQNKNAH
Sbjct: 612 DFTVRLGFEKLKEFIEKWEGPAVPPTRHNLKLFTDKDTYEAMDGLAKLQNKNAH 665

[Close]
BLAST of Lag0041209 vs. ExPASy Swiss-Prot
Match: O82802 (Sulfite reductase 1 [ferredoxin], chloroplastic OS=Nicotiana tabacum OX=4097 GN=SIR1 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.3e-08
Identity = 27/54 (50.00%), Postives = 35/54 (64.81%), Query Frame = 0 

Query: 55  DLEFNLGFEKLKELVSKWDSHVLAPTHYNLKLFANNNMYDAMDDLVKLQNKNAH 109
           D    +GFEKL E V KW+    + + YNLKLFA+   Y+AMD L  +Q+KNAH
Sbjct: 619 DFTNRMGFEKLGEFVEKWEGIPESSSRYNLKLFADRETYEAMDALASIQDKNAH 672

The following BLAST results are available for this feature:
BLAST of Lag0041209 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154338.14.4e-1270.37sulfite reductase [ferredoxin], chloroplastic [Momordica charantia][more]
XP_022988036.19.9e-1266.67sulfite reductase [ferredoxin], chloroplastic-like [Cucurbita maxima][more]
TYK18869.19.9e-1275.51sulfite reductase [Cucumis melo var. makuwa][more]
XP_008450416.19.9e-1275.51PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Cucumis melo] >KAA0051... [more]
KAE8653511.19.9e-1275.51hypothetical protein Csa_007580 [Cucumis sativus][more]
BLAST of Lag0041209 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q75NZ01.0e-1157.41Sulfite reductase [ferredoxin], chloroplastic OS=Pisum sativum OX=3888 GN=SIR PE... [more]
O828025.3e-0850.00Sulfite reductase 1 [ferredoxin], chloroplastic OS=Nicotiana tabacum OX=4097 GN=... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0041209.1Lag0041209.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009409 response to cold
biological_process GO:0000103 sulfate assimilation
cellular_component GO:0042644 chloroplast nucleoid
cellular_component GO:0010319 stromule
cellular_component GO:0009337 sulfite reductase complex (NADPH)
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0020037 heme binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016002 sulfite reductase activity
molecular_function GO:0050311 sulfite reductase (ferredoxin) activity