Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGAGCCTGAGATCGCCGCCGTCTCTCCCACCGAACACGATTCTACCTCCCCGCCGACGAAACCGGCAACCGACTCCCAAGGAGATCAGGCCAAGGAGTCAACCAAATCATCCAAATCGTTCAACGCCTCCTTCAGCATTTGGCCCCCTTCGCAACGCACTCGCGACGCTGTCATCAAACGTCTGATCGAGACTCTCTCGAACCCCTCTGTTCTCTCCAAGCGCTATGGCACTGTACCCCACGAAGAGGCCGCTGAAGCAGCGCGTCTTATAGAGGAGGAAGCATATTCTTTCGCCGCCGCTAAAGCCAGCGCTGACGACGACGGGATCGAGATCCTTCAGCTATATTCTAGGGAGATCAGCAAGCGCACGCTCGAGACTGTCAAGGCTAGAGCCGCGTCCGATTCTCCTGCTGAAAACGGTTCGTCTCCTGTTGCATCGACGACCACTAACGAGGAAACCCCATCTGTTGAAGAATCCTGA
mRNA sequence
ATGTCTGAGCCTGAGATCGCCGCCGTCTCTCCCACCGAACACGATTCTACCTCCCCGCCGACGAAACCGGCAACCGACTCCCAAGGAGATCAGGCCAAGGAGTCAACCAAATCATCCAAATCGTTCAACGCCTCCTTCAGCATTTGGCCCCCTTCGCAACGCACTCGCGACGCTGTCATCAAACGTCTGATCGAGACTCTCTCGAACCCCTCTGTTCTCTCCAAGCGCTATGGCACTGTACCCCACGAAGAGGCCGCTGAAGCAGCGCGTCTTATAGAGGAGGAAGCATATTCTTTCGCCGCCGCTAAAGCCAGCGCTGACGACGACGGGATCGAGATCCTTCAGCTATATTCTAGGGAGATCAGCAAGCGCACGCTCGAGACTGTCAAGGCTAGAGCCGCGTCCGATTCTCCTGCTGAAAACGGTTCGTCTCCTGTTGCATCGACGACCACTAACGAGGAAACCCCATCTGTTGAAGAATCCTGA
Coding sequence (CDS)
ATGTCTGAGCCTGAGATCGCCGCCGTCTCTCCCACCGAACACGATTCTACCTCCCCGCCGACGAAACCGGCAACCGACTCCCAAGGAGATCAGGCCAAGGAGTCAACCAAATCATCCAAATCGTTCAACGCCTCCTTCAGCATTTGGCCCCCTTCGCAACGCACTCGCGACGCTGTCATCAAACGTCTGATCGAGACTCTCTCGAACCCCTCTGTTCTCTCCAAGCGCTATGGCACTGTACCCCACGAAGAGGCCGCTGAAGCAGCGCGTCTTATAGAGGAGGAAGCATATTCTTTCGCCGCCGCTAAAGCCAGCGCTGACGACGACGGGATCGAGATCCTTCAGCTATATTCTAGGGAGATCAGCAAGCGCACGCTCGAGACTGTCAAGGCTAGAGCCGCGTCCGATTCTCCTGCTGAAAACGGTTCGTCTCCTGTTGCATCGACGACCACTAACGAGGAAACCCCATCTGTTGAAGAATCCTGA
Protein sequence
MSEPEIAAVSPTEHDSTSPPTKPATDSQGDQAKESTKSSKSFNASFSIWPPSQRTRDAVIKRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSREISKRTLETVKARAASDSPAENGSSPVASTTTNEETPSVEES
Homology
BLAST of Lag0037001 vs. NCBI nr
Match:
XP_004141279.1 (MFP1 attachment factor 1 [Cucumis sativus] >KGN55241.1 hypothetical protein Csa_012612 [Cucumis sativus])
HSP 1 Score: 246.9 bits (629), Expect = 1.2e-61
Identity = 145/163 (88.96%), Postives = 149/163 (91.41%), Query Frame = 0
Query: 1 MSEPEIAAVSPTEHDSTSPPTKPATDSQ-GDQAKESTKSSKSFNASFSIWPPSQRTRDAV 60
MS+P+IAA +PTEHDS +PP TDSQ GDQAKESTKS KSFN SFSIWPPSQRTRDAV
Sbjct: 1 MSDPQIAAGTPTEHDSPTPP----TDSQVGDQAKESTKSPKSFNTSFSIWPPSQRTRDAV 60
Query: 61 IKRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSR 120
IKRLIETLSNPSVLSKRYGTVP EEAAEAARLIEEEAYSFAA KASADDDGIEILQLYSR
Sbjct: 61 IKRLIETLSNPSVLSKRYGTVPQEEAAEAARLIEEEAYSFAAGKASADDDGIEILQLYSR 120
Query: 121 EISKRTLETVKARAASDSPAENGSS-PVASTTTNEETPSVEES 162
EISKRTLETVKARAASDS AENGSS PV STTTNEETPSVEES
Sbjct: 121 EISKRTLETVKARAASDSTAENGSSPPVVSTTTNEETPSVEES 159
BLAST of Lag0037001 vs. NCBI nr
Match:
XP_008452611.1 (PREDICTED: MFP1 attachment factor 1-like [Cucumis melo] >KAA0064423.1 MFP1 attachment factor 1-like [Cucumis melo var. makuwa] >TYK20164.1 MFP1 attachment factor 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 245.4 bits (625), Expect = 3.5e-61
Identity = 143/163 (87.73%), Postives = 149/163 (91.41%), Query Frame = 0
Query: 1 MSEPEIAAVSPTEHDSTSPPTKPATDSQ-GDQAKESTKSSKSFNASFSIWPPSQRTRDAV 60
MS+P+IAA +PTEHDS +PP TDSQ GDQAKESTKS KSFN SFSIWPPSQRTRDAV
Sbjct: 1 MSDPQIAAGTPTEHDSPTPP----TDSQVGDQAKESTKSPKSFNTSFSIWPPSQRTRDAV 60
Query: 61 IKRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSR 120
+KRLIETLSNPSVLSKRYGTVP EEAAEAARLIEEEAYSFAA KASADDDGIEILQLYSR
Sbjct: 61 VKRLIETLSNPSVLSKRYGTVPQEEAAEAARLIEEEAYSFAAGKASADDDGIEILQLYSR 120
Query: 121 EISKRTLETVKARAASDSPAENGSS-PVASTTTNEETPSVEES 162
EISKRTLETVKARAASDS AENGSS PV STTTNEETPSVE+S
Sbjct: 121 EISKRTLETVKARAASDSTAENGSSPPVVSTTTNEETPSVEQS 159
BLAST of Lag0037001 vs. NCBI nr
Match:
XP_022143006.1 (MFP1 attachment factor 1-like [Momordica charantia])
HSP 1 Score: 232.3 bits (591), Expect = 3.0e-57
Identity = 136/162 (83.95%), Postives = 143/162 (88.27%), Query Frame = 0
Query: 1 MSEPEIAAVSPTEHDSTSPPTKPATDSQGDQAKESTKSSKSFNASFSIWPPSQRTRDAVI 60
MSEPEIAAV TSPP+K ATDS GDQAKE TKS KSF+ASFSIWPPSQRTRDAV+
Sbjct: 1 MSEPEIAAV------PTSPPSKAATDSPGDQAKELTKSPKSFSASFSIWPPSQRTRDAVV 60
Query: 61 KRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSRE 120
KRLIETLSNPSVLSKRYGTVP +EAAEAARLIEEEAYSFAA+KA+ADDDGIEILQLYSRE
Sbjct: 61 KRLIETLSNPSVLSKRYGTVPQDEAAEAARLIEEEAYSFAASKANADDDGIEILQLYSRE 120
Query: 121 ISKRTLETVKARAASDSPAENG-SSPVASTTTNEETPSVEES 162
ISKRTLETVKA+AA DS AENG SSP AS T EETPSVEES
Sbjct: 121 ISKRTLETVKAKAAPDSTAENGSSSPAASATIKEETPSVEES 156
BLAST of Lag0037001 vs. NCBI nr
Match:
XP_038899942.1 (MFP1 attachment factor 1-like [Benincasa hispida])
HSP 1 Score: 231.9 bits (590), Expect = 4.0e-57
Identity = 138/163 (84.66%), Postives = 143/163 (87.73%), Query Frame = 0
Query: 1 MSEPEIAAVSPTEHDSTSPPTKPATDSQ-GDQAKESTKSSKSFNASFSIWPPSQRTRDAV 60
MSEP+IAA+ TE DSTS P TDSQ GD KESTKS KSFN SFSIWPPSQRTRDAV
Sbjct: 1 MSEPQIAALPSTEQDSTS----PTTDSQAGDLPKESTKSPKSFNTSFSIWPPSQRTRDAV 60
Query: 61 IKRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSR 120
IKRLIETLSNPSVLSKRYGTVP +EA+EAARLIEEEAYSFAA KA+ADDDGIEILQLYSR
Sbjct: 61 IKRLIETLSNPSVLSKRYGTVPQDEASEAARLIEEEAYSFAAGKATADDDGIEILQLYSR 120
Query: 121 EISKRTLETVKARAASDSPAENGSS-PVASTTTNEETPSVEES 162
EISKRTLETVKARAASDS ENGSS PV STTTN ETPSVEES
Sbjct: 121 EISKRTLETVKARAASDSTTENGSSPPVVSTTTNAETPSVEES 159
BLAST of Lag0037001 vs. NCBI nr
Match:
KAG6591406.1 (MFP1 attachment factor 1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 226.1 bits (575), Expect = 2.2e-55
Identity = 133/161 (82.61%), Postives = 137/161 (85.09%), Query Frame = 0
Query: 1 MSEPEIAAVSPTEHDSTSPPTKPATDSQGDQAKESTKSSKSFNASFSIWPPSQRTRDAVI 60
MSEPEIA V TE DS GDQAKES KSSKSF+ SFSIWPPSQRTRDAVI
Sbjct: 1 MSEPEIATVPTTEQ-----------DSPGDQAKESPKSSKSFSTSFSIWPPSQRTRDAVI 60
Query: 61 KRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSRE 120
KRLIETLSNPSVLSKRYGTVPHEEA +AARLIEEEAYSFAAAKASADDDGIEILQLYSRE
Sbjct: 61 KRLIETLSNPSVLSKRYGTVPHEEATDAARLIEEEAYSFAAAKASADDDGIEILQLYSRE 120
Query: 121 ISKRTLETVKARAASDSPAENGSS-PVASTTTNEETPSVEE 161
ISKRTL+TVKARAASDS AENGSS PV STT EETPSV+E
Sbjct: 121 ISKRTLDTVKARAASDSTAENGSSAPVVSTTDKEETPSVQE 150
BLAST of Lag0037001 vs. ExPASy Swiss-Prot
Match:
Q9M7N6 (MFP1 attachment factor 1 OS=Solanum lycopersicum OX=4081 GN=MAF1 PE=1 SV=1)
HSP 1 Score: 131.0 bits (328), Expect = 1.2e-29
Identity = 70/119 (58.82%), Postives = 90/119 (75.63%), Query Frame = 0
Query: 27 SQGDQAKESTKSSKSFNASFSIWPPSQRTRDAVIKRLIETLSNPSVLSKRYGTVPHEEAA 86
+Q + +K SFSIWPP+QRTRDAVI RLIE+LS PS+LSKRYGT+P +EA+
Sbjct: 7 AQSQETVTQETQNKPMTTSFSIWPPTQRTRDAVINRLIESLSTPSILSKRYGTLPQDEAS 66
Query: 87 EAARLIEEEAYSFAAAKASADDDGIEILQLYSREISKRTLETVKARAASDSPAENGSSP 146
E ARLIEEEA++ A + AS DDGIEILQ+YS+EISKR ++TVK+R+A + +E S P
Sbjct: 67 ETARLIEEEAFAAAGSTASDADDGIEILQVYSKEISKRMIDTVKSRSAPAAASEGESKP 125
BLAST of Lag0037001 vs. ExPASy Swiss-Prot
Match:
Q9C500 (WPP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=WPP2 PE=1 SV=1)
HSP 1 Score: 120.2 bits (300), Expect = 2.2e-26
Identity = 76/152 (50.00%), Postives = 98/152 (64.47%), Query Frame = 0
Query: 2 SEPEIAAVSPTEHDSTSPPTKPATDSQGDQAKESTKSSKSFNASFSIWPPSQRTRDAVIK 61
S P + S T T P ++ A D KE+ K S IWPP+Q+TRDAV+
Sbjct: 14 SPPPESESSTTISAMTDPTSQEAASKDTDLTKEAESEKKPGGISLRIWPPTQKTRDAVLN 73
Query: 62 RLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSREI 121
RLIETLS S+LSKRYGT+ ++A A+LIEEEAY A+ S+DDDGI+IL+LYS+EI
Sbjct: 74 RLIETLSTESILSKRYGTLKSDDATTVAKLIEEEAYGVASNAVSSDDDGIKILELYSKEI 133
Query: 122 SKRTLETVKARAASDSPAENGSSPVASTTTNE 154
SKR LE+VKAR S++ NGS A+T +E
Sbjct: 134 SKRMLESVKAR--SNASVGNGSVEDANTDASE 163
BLAST of Lag0037001 vs. ExPASy Swiss-Prot
Match:
Q9FMH6 (WPP domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=WPP1 PE=1 SV=1)
HSP 1 Score: 109.0 bits (271), Expect = 5.1e-23
Identity = 68/153 (44.44%), Postives = 95/153 (62.09%), Query Frame = 0
Query: 1 MSEPEIAAVSPTEHDSTSPPTKPATDSQGDQAKESTKSSKSFNASFSIWPPSQRTRDAVI 60
M+E E +++ S+ PP +S E+ K+ S IWPP+Q+TRDAVI
Sbjct: 1 MAETETESIT----TSSPPPISETENSTTLPTTETEKNPNPVTISLRIWPPTQKTRDAVI 60
Query: 61 KRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSRE 120
RLIETLS S+LSKR+G++ EEA+ A+ IE+EAY+ A+A DDDGIEIL+ YS+E
Sbjct: 61 NRLIETLSTESILSKRFGSLESEEASSVAKSIEDEAYAIASATVFGDDDGIEILKAYSKE 120
Query: 121 ISKRTLETVKARAASDSPAENGSSPVASTTTNE 154
ISKR LE+VKA++ SP + S ++
Sbjct: 121 ISKRMLESVKAKSNVASPPPKDGDGIESAVDSK 149
BLAST of Lag0037001 vs. ExPASy Swiss-Prot
Match:
Q0WQ91 (WPP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=WPP3 PE=2 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 50/126 (39.68%), Postives = 75/126 (59.52%), Query Frame = 0
Query: 15 DSTSPPTKPATDSQGDQAKESTKSSKSFNASFSIWPPSQRTRDAVIKRLIETLSNPSVLS 74
+S S T + D E TK KS FS+WPP Q++RD V+ +I+TLS S+LS
Sbjct: 20 ESRSDETSCLQKHRSDATSEVTKEEKSGGILFSVWPPCQKSRDYVVNSMIKTLSTDSILS 79
Query: 75 KRYGTVPHEEAAEAARLIEEEAYSFAAAKASADDDGIEILQLYSREISKRTLETVKARAA 134
+YGT+ EEA+ A+ IEE+AY A+ S+ DGI+ L++Y E S+R +E+ + R
Sbjct: 80 YKYGTIKPEEASAVAKSIEEKAYDIASRFVSS--DGIKNLEVYGIETSERMIESAEVRFK 139
Query: 135 SDSPAE 141
++ E
Sbjct: 140 ANGSME 143
BLAST of Lag0037001 vs. ExPASy Swiss-Prot
Match:
Q9LE82 (RAN GTPase-activating protein 1 OS=Arabidopsis thaliana OX=3702 GN=RANGAP1 PE=1 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 4.6e-08
Identity = 34/108 (31.48%), Postives = 64/108 (59.26%), Query Frame = 0
Query: 35 STKSSKSFNASFSIWPPSQRTRDAVIKRLIETLSNPSVLSKRYGTVPHEEAAEAARLIEE 94
S K++++ S +WPPS+ TR +++R+ + ++ PS+ S++YG + EEA + A+ IE+
Sbjct: 4 SAKTTQNRVLSVKMWPPSKSTRLMLVERMTKNITTPSIFSRKYGLLSVEEAEQDAKRIED 63
Query: 95 EAYSFAAA--KASADDDGIEILQLYSREISKRTLETVKARAASDSPAE 141
A++ A + D DG + +Y++E SK L+ +K +S E
Sbjct: 64 LAFATANKHFQNEPDGDGTSAVHVYAKESSKLMLDVIKRGPQEESEVE 111
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_004141279.1 | 1.2e-61 | 88.96 | MFP1 attachment factor 1 [Cucumis sativus] >KGN55241.1 hypothetical protein Csa_... | [more] |
XP_008452611.1 | 3.5e-61 | 87.73 | PREDICTED: MFP1 attachment factor 1-like [Cucumis melo] >KAA0064423.1 MFP1 attac... | [more] |
XP_022143006.1 | 3.0e-57 | 83.95 | MFP1 attachment factor 1-like [Momordica charantia] | [more] |
XP_038899942.1 | 4.0e-57 | 84.66 | MFP1 attachment factor 1-like [Benincasa hispida] | [more] |
KAG6591406.1 | 2.2e-55 | 82.61 | MFP1 attachment factor 1, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
Match Name | E-value | Identity | Description | |
Q9M7N6 | 1.2e-29 | 58.82 | MFP1 attachment factor 1 OS=Solanum lycopersicum OX=4081 GN=MAF1 PE=1 SV=1 | [more] |
Q9C500 | 2.2e-26 | 50.00 | WPP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=WPP2 PE=1 SV=... | [more] |
Q9FMH6 | 5.1e-23 | 44.44 | WPP domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=WPP1 PE=1 SV=... | [more] |
Q0WQ91 | 1.5e-14 | 39.68 | WPP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=WPP3 PE=2 SV=... | [more] |
Q9LE82 | 4.6e-08 | 31.48 | RAN GTPase-activating protein 1 OS=Arabidopsis thaliana OX=3702 GN=RANGAP1 PE=1 ... | [more] |