Lag0016558 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0016558
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionethylene-responsive transcription factor ERF098-like
Locationchr12: 38992751 .. 38993134 (-)
RNA-Seq ExpressionLag0016558
SyntenyLag0016558
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAATATGGACGAGGAAGGGAAGTCCGGCGAGGTTCGATACCGGGGCGTGCGGCGGAGGCCGTGGGGGAAATTTGCGGCGGAGATTCGTGACTCGTCGAGGCACGGGGCTCGGGTTTGGCTTGGAACTTTCAACACGGCGGAGGAGGCAGCTCGGGCCTACGACCGAGCTGCCTATGCCATGCGTGGTCATTTGGCTGTCCTGAATTTCCCTGATGAATATCCTTCTCTTGGTGGCAGCAGCAGCTCCTCTTCTTCTACTTCTGCTACGGCGTCCAGACGCCAAGGCCAGCGTGATCAAAGTCAAGTGATTGAATTGGAATGTCTGGATGATAAGGTGCTGGAGGAGCTTCTTGAGTATGAGGAGAAAAGGAAGAAGTGA

mRNA sequence

ATGCAAAATATGGACGAGGAAGGGAAGTCCGGCGAGGTTCGATACCGGGGCGTGCGGCGGAGGCCGTGGGGGAAATTTGCGGCGGAGATTCGTGACTCGTCGAGGCACGGGGCTCGGGTTTGGCTTGGAACTTTCAACACGGCGGAGGAGGCAGCTCGGGCCTACGACCGAGCTGCCTATGCCATGCGTGGTCATTTGGCTGTCCTGAATTTCCCTGATGAATATCCTTCTCTTGGTGGCAGCAGCAGCTCCTCTTCTTCTACTTCTGCTACGGCGTCCAGACGCCAAGGCCAGCGTGATCAAAGTCAAGTGATTGAATTGGAATGTCTGGATGATAAGGTGCTGGAGGAGCTTCTTGAGTATGAGGAGAAAAGGAAGAAGTGA

Coding sequence (CDS)

ATGCAAAATATGGACGAGGAAGGGAAGTCCGGCGAGGTTCGATACCGGGGCGTGCGGCGGAGGCCGTGGGGGAAATTTGCGGCGGAGATTCGTGACTCGTCGAGGCACGGGGCTCGGGTTTGGCTTGGAACTTTCAACACGGCGGAGGAGGCAGCTCGGGCCTACGACCGAGCTGCCTATGCCATGCGTGGTCATTTGGCTGTCCTGAATTTCCCTGATGAATATCCTTCTCTTGGTGGCAGCAGCAGCTCCTCTTCTTCTACTTCTGCTACGGCGTCCAGACGCCAAGGCCAGCGTGATCAAAGTCAAGTGATTGAATTGGAATGTCTGGATGATAAGGTGCTGGAGGAGCTTCTTGAGTATGAGGAGAAAAGGAAGAAGTGA

Protein sequence

MQNMDEEGKSGEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRAAYAMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVLEELLEYEEKRKK
Homology
[Close]
BLAST of Lag0016558 vs. NCBI nr
Match: XP_038876105.1 (ethylene-responsive transcription factor ERF098-like [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 6.3e-50
Identity = 112/129 (86.82%), Postives = 115/129 (89.15%), Query Frame = 0 

Query: 4   MDEEGKS-----GEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRA 63
           MDEEGKS     GEVRYRGVRRRPWGKFAAEIRDSSRHGAR+WLGTFNTAEEAARAYDRA
Sbjct: 1   MDEEGKSSNDQGGEVRYRGVRRRPWGKFAAEIRDSSRHGARIWLGTFNTAEEAARAYDRA 60

Query: 64  AYAMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVLEEL 123
           AY MRGHLAVLNFP+EYPSLGGSSS     +A  SRRQGQ DQSQVIELECLDDKVLEEL
Sbjct: 61  AYMMRGHLAVLNFPNEYPSLGGSSS-----AAGGSRRQGQGDQSQVIELECLDDKVLEEL 120

Query: 124 LEYEEKRKK 128
           LEYEEKRKK
Sbjct: 121 LEYEEKRKK 124

[Close]
BLAST of Lag0016558 vs. NCBI nr
Match: XP_023006327.1 (ethylene-responsive transcription factor ERF098-like [Cucurbita maxima])

HSP 1 Score: 198.4 bits (503), Expect = 3.8e-47
Identity = 108/129 (83.72%), Postives = 113/129 (87.60%), Query Frame = 0 

Query: 4   MDEEGKS-----GEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRA 63
           MDEE +S     GEVRYRGVRRRPWGKFAAEIRDSSR+GARVWLGTFNTAEEAARAYDRA
Sbjct: 1   MDEEARSGSDQGGEVRYRGVRRRPWGKFAAEIRDSSRNGARVWLGTFNTAEEAARAYDRA 60

Query: 64  AYAMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVLEEL 123
           AY MRGHLAVLNFPDEYPSLGGSSS SSS++    RRQGQ  +  VIELECLDDKVLEEL
Sbjct: 61  AYVMRGHLAVLNFPDEYPSLGGSSSGSSSSAPAPPRRQGQGGR-HVIELECLDDKVLEEL 120

Query: 124 LEYEEKRKK 128
           LEYEEKRKK
Sbjct: 121 LEYEEKRKK 128

[Close]
BLAST of Lag0016558 vs. NCBI nr
Match: XP_023547375.1 (ethylene-responsive transcription factor ERF098-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.4 bits (503), Expect = 3.8e-47
Identity = 111/129 (86.05%), Postives = 113/129 (87.60%), Query Frame = 0 

Query: 4   MDEEGKS-----GEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRA 63
           MDEE +S     GEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRA
Sbjct: 1   MDEEPRSGTDQGGEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRA 60

Query: 64  AYAMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVLEEL 123
           AY MRGHLAVLNFPDEYPSLGG SSS SS SA ASRRQG   +  VIELECLDDKVLEEL
Sbjct: 61  AYVMRGHLAVLNFPDEYPSLGG-SSSGSSLSAPASRRQGSGGR-HVIELECLDDKVLEEL 120

Query: 124 LEYEEKRKK 128
           LEYEEKRKK
Sbjct: 121 LEYEEKRKK 127

[Close]
BLAST of Lag0016558 vs. NCBI nr
Match: XP_022958792.1 (ethylene-responsive transcription factor ERF098-like [Cucurbita moschata])

HSP 1 Score: 198.0 bits (502), Expect = 5.0e-47
Identity = 111/129 (86.05%), Postives = 115/129 (89.15%), Query Frame = 0 

Query: 4   MDEEGKS-----GEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRA 63
           MDEE +S     GEVRYRGVRRRPWGKFAAEIRDSSR+GARVWLGTFNTAEEAARAYDRA
Sbjct: 1   MDEEPRSGTDQGGEVRYRGVRRRPWGKFAAEIRDSSRNGARVWLGTFNTAEEAARAYDRA 60

Query: 64  AYAMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVLEEL 123
           AY MRGHLAVLNFPDEYPSLGGSSS SSS SA+ASRRQG   +  VIELECLDDKVLEEL
Sbjct: 61  AYVMRGHLAVLNFPDEYPSLGGSSSGSSS-SASASRRQGSGGR-HVIELECLDDKVLEEL 120

Query: 124 LEYEEKRKK 128
           LEYEEKRKK
Sbjct: 121 LEYEEKRKK 127

[Close]
BLAST of Lag0016558 vs. NCBI nr
Match: XP_008460635.1 (PREDICTED: ethylene-responsive transcription factor ERF098 [Cucumis melo] >KAA0065676.1 ethylene-responsive transcription factor ERF098 [Cucumis melo var. makuwa] >TYK08226.1 ethylene-responsive transcription factor ERF098 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 1.5e-46
Identity = 108/129 (83.72%), Postives = 114/129 (88.37%), Query Frame = 0 

Query: 4   MDEEGKS-----GEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRA 63
           MDEEGKS     GEVRYRGVRRRPWGKFAAEIRDSSRHGAR+WLGTFNTAEEAARAYDRA
Sbjct: 1   MDEEGKSSNDQGGEVRYRGVRRRPWGKFAAEIRDSSRHGARIWLGTFNTAEEAARAYDRA 60

Query: 64  AYAMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVLEEL 123
           AY MRGHLAVLNFP+EYPSLGGSSS+SSS+S+ A+     R Q QVIELE LDDKVLEEL
Sbjct: 61  AYMMRGHLAVLNFPNEYPSLGGSSSASSSSSSAAA----PRVQGQVIELEYLDDKVLEEL 120

Query: 124 LEYEEKRKK 128
           LEYEEKRKK
Sbjct: 121 LEYEEKRKK 125

[Close]
BLAST of Lag0016558 vs. ExPASy Swiss-Prot
Match: Q9LTC5 (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana OX=3702 GN=ERF098 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.3e-33
Identity = 79/132 (59.85%), Postives = 101/132 (76.52%), Query Frame = 0 

Query: 3   NMDEEGKSGEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRAAYAM 62
           N  ++ K  + R+RGVRRRPWGKFAAEIRD SR+GAR+WLGTF TAEEAARAYDRAA+ +
Sbjct: 10  NQSQDDK--QARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNL 69

Query: 63  RGHLAVLNFPDE-YPSLGG-------SSSSSSSTSATASRRQGQRDQSQVIELECLDDKV 122
           RGHLA+LNFP+E YP +         +SSSSSS+S + S    +++Q +V E E LDDKV
Sbjct: 70  RGHLAILNFPNEYYPRMDDYSLRPPYASSSSSSSSGSTSTNVSRQNQREVFEFEYLDDKV 129

Query: 123 LEELLEYEEKRK 127
           LEELL+ EE+++
Sbjct: 130 LEELLDSEERKR 139

[Close]
BLAST of Lag0016558 vs. ExPASy Swiss-Prot
Match: Q9LTC6 (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana OX=3702 GN=ERF095 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.2e-31
Identity = 73/124 (58.87%), Postives = 93/124 (75.00%), Query Frame = 0 

Query: 6   EEGKSGEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRAAYAMRGH 65
           E   + E++YRGVR+RPWGK+AAEIRDS+RHGARVWLGTFNTAE+AARAYDRAA+ MRG 
Sbjct: 5   ESYNTNEMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQ 64

Query: 66  LAVLNFPDEYPSL----GGSSSSSSSTSATASRRQGQRDQS-QVIELECLDDKVLEELLE 125
            A+LNFP EY  +     GS  ++ ++S++  R  G  D   +VIE E LDD +LEELL+
Sbjct: 65  RAILNFPHEYQMMKDGPNGSHENAVASSSSGYRGGGGGDDGREVIEFEYLDDSLLEELLD 124

[Close]
BLAST of Lag0016558 vs. ExPASy Swiss-Prot
Match: Q9LSX0 (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana OX=3702 GN=ERF096 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.9e-31
Identity = 74/127 (58.27%), Postives = 90/127 (70.87%), Query Frame = 0 

Query: 4   MDEEGK---SGEVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRAAY 63
           MD+ G+   +   +YRGVRRRPWGK+AAEIRDS +HG RVWLGTF+TAEEAARAYD+AAY
Sbjct: 1   MDQGGRGVGAEHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAY 60

Query: 64  AMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVLEELLE 123
           +MRG  A+LNFP EY    G SSS++   ++++         QV E E LDD VLEELLE
Sbjct: 61  SMRGQAAILNFPHEYNMGSGVSSSTAMAGSSSASASASSSSRQVFEFEYLDDSVLEELLE 120

Query: 124 YEEKRKK 128
             EK  K
Sbjct: 121 EGEKPNK 127

[Close]
BLAST of Lag0016558 vs. ExPASy Swiss-Prot
Match: P93822 (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana OX=3702 GN=ERF14 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 8.9e-31
Identity = 76/132 (57.58%), Postives = 96/132 (72.73%), Query Frame = 0 

Query: 4   MDEEGKSG--------EVRYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAY 63
           MD+ G+S         + +YRGVRRRPWGK+AAEIRDS +HG RVWLGTF+TAE+AARAY
Sbjct: 1   MDQGGRSSGSGGGGAEQGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAY 60

Query: 64  DRAAYAMRGHLAVLNFPDEYPSLGGSSSSSSSTSATASRRQGQRDQSQVIELECLDDKVL 123
           DRAAY+MRG  A+LNFP EY ++G  SSS+++ S+++S+        QV E E LDD VL
Sbjct: 61  DRAAYSMRGKAAILNFPHEY-NMGTGSSSTAANSSSSSQ--------QVFEFEYLDDSVL 120

Query: 124 EELLEYEEKRKK 128
           +ELLEY E   K
Sbjct: 121 DELLEYGENYNK 123

[Close]
BLAST of Lag0016558 vs. ExPASy Swiss-Prot
Match: O04681 (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum OX=4081 GN=PTI5 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.7e-21
Identity = 56/104 (53.85%), Postives = 71/104 (68.27%), Query Frame = 0 

Query: 14  RYRGVRRRPWGKFAAEIRDSSRHGARVWLGTFNTAEEAARAYDRAAYAMRGHLAVLNFPD 73
           +YRGVRRRPWGK+AAEIRDS+RHGARVWLGTF TAEEAA AYDRAA+ MRG  A+LNFP 
Sbjct: 58  KYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPS 117

Query: 74  EYPSLG--------GSSSSSSSTSATASRRQGQRDQSQVIELEC 110
           E  +           S+S +++ ++ +S  +     + V E  C
Sbjct: 118 EIVNASVSVDKLSLCSNSYTTNNNSDSSLNEVSSGTNDVFESRC 161

The following BLAST results are available for this feature:
BLAST of Lag0016558 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038876105.16.3e-5086.82ethylene-responsive transcription factor ERF098-like [Benincasa hispida][more]
XP_023006327.13.8e-4783.72ethylene-responsive transcription factor ERF098-like [Cucurbita maxima][more]
XP_023547375.13.8e-4786.05ethylene-responsive transcription factor ERF098-like [Cucurbita pepo subsp. pepo... [more]
XP_022958792.15.0e-4786.05ethylene-responsive transcription factor ERF098-like [Cucurbita moschata][more]
XP_008460635.11.5e-4683.72PREDICTED: ethylene-responsive transcription factor ERF098 [Cucumis melo] >KAA00... [more]
BLAST of Lag0016558 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LTC54.3e-3359.85Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9LTC65.2e-3158.87Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9LSX08.9e-3158.27Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana OX=3702 ... [more]
P938228.9e-3157.58Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana OX=3702 GN=E... [more]
O046813.7e-2153.85Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicu... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 38..54
score: 73.69
coord: 15..26
score: 72.73
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 14..78
e-value: 7.6E-35
score: 131.8
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 14..65
e-value: 1.7E-16
score: 60.2
IPR001471AP2/ERF domainPROSITEPS51032AP2_ERFcoord: 14..72
score: 23.801672
IPR001471AP2/ERF domainCDDcd00018AP2coord: 14..73
e-value: 4.19814E-19
score: 73.0747
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10AP2/ERF domaincoord: 13..73
e-value: 3.8E-28
score: 99.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..103
NoneNo IPR availablePANTHERPTHR31190:SF86OS09G0571700 PROTEINcoord: 9..122
IPR044808Ethylene-responsive transcription factorPANTHERPTHR31190DNA-BINDING DOMAINcoord: 9..122
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 14..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0016558.1Lag0016558.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009873 ethylene-activated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity