Lag0015624.1 (mRNA) Sponge gourd (AG‐4) v1

Overview
NameLag0015624.1
TypemRNA
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr12: 17896674 .. 17897538 (+)
Sequence length705
RNA-Seq ExpressionLag0015624.1
SyntenyLag0015624.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTGCATGGGAAAGAGACTGAAAGGGAACCAGTTCAGGAGGCTCGAGTGAAGGTAATCATGTCGGAGGTACCTAAGCGTCGCCGCATTAAGCGAAAGGTCAGCCGCGTTCAGGTGATTCGGACTGATACCCCATCACCACCATTGTCAGATTCTGAGAGAAAGAAGGCAGAACGAGAGGAAAGAGAGAAAAAAGAAGCTGAGGACAAAGTGCGGGAAGAAGCAGAGAAGAAGGCTGAGGAAGAGCAGTTGCTCAAGCGACGAGCGGAAAAGGGCAAAAATATTACTGAAGCATCGGAGGAACACGATGAAATAGAAGAACAGCGATTGTCGTATGATCGCTTCGTCAACAATTTTTCTAGAGCAAAATACGCTGAGCTTCTGAAAAGGGATTTCTTATTTGAGCGAGGGTTCAGCGGTGATCTTCCGCAATTTCTGAGGACCAGTATTGTAGACCACGAATGGGAGTTGTTTTGTGCGAAGCCTGAGTCTGTAAACGCATAGGTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGAATTTTATCCGAACATTGACAAGGAGGATGGTTTCCAGGTAGTTGTTCGAAGAGTCGAGGTAGATTGGAGTCCTAGTGCTATCAACGCACTGTACAATCTTCAGAACTTCCCCCATGCGGCATATAATGAGATGGTTGTGGCACCATCTAATGCGCAGTTAAGTGATGCTGTGAGGGAGGTAGGTATTGAAGGAGCACAGTGGCAGCTGTCCAAGACTCGAAGAGGACATTCCAGGCGGCTTATTTGA

mRNA sequence

ATGGTTGTGCATGGGAAAGAGACTGAAAGGGAACCAGTTCAGGAGGCTCGAGTGAAGGTAATCATGTCGGAGGTACCTAAGCGTCGCCGCATTAAGCGAAAGGTCAGCCGCGTTCAGGTGATTCGGACTGATACCCCATCACCACCATTGTCAGATTCTGAGAGAAAGAAGGCAGAACGAGAGGAAAGAGAGAAAAAAGAAGCTGAGGACAAAGTGCGGGAAGAAGCAGAGAAGAAGGCTGAGGAAGAGCAGTTGCTCAAGCGACGAGCGGAAAAGGGCAAAAATATTACTGAAGCATCGGAGGAACACGATGAAATAGAAGAACAGCGATTGTCGTATGATCGCTTCGTCAACAATTTTTCTAGAGCAAAATACGCTGAGCTTCTGAAAAGGGATTTCTTATTTGAGCGAGGGTTCAGCGGTGATCTTCCGCAATTTCTGAGGACCAGTATTGTAGACCACGAATGGGAGTTGTTTTGTGCGAAGCCTGAGTCTGTAGTTGTTCGAAGAGTCGAGGTAGATTGGAGTCCTAGTGCTATCAACGCACTGTACAATCTTCAGAACTTCCCCCATGCGGCATATAATGAGATGGTTGTGGCACCATCTAATGCGCAGTTAAGTGATGCTGTGAGGGAGGTAGGTATTGAAGGAGCACAGTGGCAGCTGTCCAAGACTCGAAGAGGACATTCCAGGCGGCTTATTTGA

Coding sequence (CDS)

ATGGTTGTGCATGGGAAAGAGACTGAAAGGGAACCAGTTCAGGAGGCTCGAGTGAAGGTAATCATGTCGGAGGTACCTAAGCGTCGCCGCATTAAGCGAAAGGTCAGCCGCGTTCAGGTGATTCGGACTGATACCCCATCACCACCATTGTCAGATTCTGAGAGAAAGAAGGCAGAACGAGAGGAAAGAGAGAAAAAAGAAGCTGAGGACAAAGTGCGGGAAGAAGCAGAGAAGAAGGCTGAGGAAGAGCAGTTGCTCAAGCGACGAGCGGAAAAGGGCAAAAATATTACTGAAGCATCGGAGGAACACGATGAAATAGAAGAACAGCGATTGTCGTATGATCGCTTCGTCAACAATTTTTCTAGAGCAAAATACGCTGAGCTTCTGAAAAGGGATTTCTTATTTGAGCGAGGGTTCAGCGGTGATCTTCCGCAATTTCTGAGGACCAGTATTGTAGACCACGAATGGGAGTTGTTTTGTGCGAAGCCTGAGTCTGTAGTTGTTCGAAGAGTCGAGGTAGATTGGAGTCCTAGTGCTATCAACGCACTGTACAATCTTCAGAACTTCCCCCATGCGGCATATAATGAGATGGTTGTGGCACCATCTAATGCGCAGTTAAGTGATGCTGTGAGGGAGGTAGGTATTGAAGGAGCACAGTGGCAGCTGTCCAAGACTCGAAGAGGACATTCCAGGCGGCTTATTTGA

Protein sequence

MVVHGKETEREPVQEARVKVIMSEVPKRRRIKRKVSRVQVIRTDTPSPPLSDSERKKAEREEREKKEAEDKVREEAEKKAEEEQLLKRRAEKGKNITEASEEHDEIEEQRLSYDRFVNNFSRAKYAELLKRDFLFERGFSGDLPQFLRTSIVDHEWELFCAKPESVVVRRVEVDWSPSAINALYNLQNFPHAAYNEMVVAPSNAQLSDAVREVGIEGAQWQLSKTRRGHSRRLI
Homology
[Close]
BLAST of Lag0015624.1 vs. NCBI nr
Match: PON65868.1 (hypothetical protein PanWU01x14_113570 [Parasponia andersonii])

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-05
Identity = 42/136 (30.88%), Postives = 62/136 (45.59%), Query Frame = 0 

Query: 115 RFVNNFSRAKYAE-LLKRDFLFERGFSGD------LPQFLRTSIVDHEWELFCAKPE--- 174
           +F +  +  +Y E +  R    E+GF GD       P F+   I  H W+LFCA PE   
Sbjct: 15  KFKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPI 74

Query: 175 -----------------SVVVRRVEVDWSPSAINALYNLQNFPHAAYNEMVVAPSNAQLS 224
                            +V VR V+V  S  AIN +Y L + P   ++E V A +  +L+
Sbjct: 75  VPLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGLGD-PIDEHSEFVEAITEPELA 134

[Close]
BLAST of Lag0015624.1 vs. ExPASy TrEMBL
Match: A0A2P5CXV1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 42/136 (30.88%), Postives = 62/136 (45.59%), Query Frame = 0 

Query: 115 RFVNNFSRAKYAE-LLKRDFLFERGFSGD------LPQFLRTSIVDHEWELFCAKPE--- 174
           +F +  +  +Y E +  R    E+GF GD       P F+   I  H W+LFCA PE   
Sbjct: 15  KFKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPI 74

Query: 175 -----------------SVVVRRVEVDWSPSAINALYNLQNFPHAAYNEMVVAPSNAQLS 224
                            +V VR V+V  S  AIN +Y L + P   ++E V A +  +L+
Sbjct: 75  VPLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGLGD-PIDEHSEFVEAITEPELA 134

The following BLAST results are available for this feature:
BLAST of Lag0015624.1 vs. NCBI nr
Match NameE-valueIdentityDescription
PON65868.12.3e-0530.88hypothetical protein PanWU01x14_113570 [Parasponia andersonii][more]
BLAST of Lag0015624.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0015624.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5CXV11.1e-0530.88Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE... [more]
BLAST of Lag0015624.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 51..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..104

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lag0015624Lag0015624gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lag0015624.1.exon1Lag0015624.1.exon1exon
Lag0015624.1.exon2Lag0015624.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.Lag0015624.1cds.Lag0015624.1CDS
cds.Lag0015624.1cds.Lag0015624.1_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lag0015624.1Lag0015624.1-proteinpolypeptide