Sed0017102 (gene) Chayote v1

Overview


Name	Sed0017102
Type	gene
Organism	Sechium edule (Chayote v1)
Description	outer envelope pore protein 24, chloroplastic-like
Location	LG13: 21783347 .. 21785834 (-)
RNA-Seq Expression	Sed0017102
Synteny	Sed0017102

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCTAAAAAGGTACGCCGCCGATTGTTGCAATTTCCAGATTCAAATATGCGAATTGAGAAGAAAGATTCATGAATTGAAATATAATTGCTAGTCTGGTAGAGATGAAATTTAGCTGAATTTGATCCGACTTTTCTGCTGGAAAACTGACTTAGGTTTCTCTAGAATTCGTTTTTCCCTTTCGCATAATCAAAATCAAATAACTGTTAGTCCCCGAGGGGTGGTTTAGTGGTTGAAAACTTGGGCTTTGAGGGTATACTCCCTTCAAGGTCTCGAGTTCGAAGTTCACTTTTCACATTACTCCTTCAATGTCTTTGGTGTCTGGCCGGGACGGACGTGCTTATCTTGGTTCAAAAAAAAAGTTTATGAACATAGTTAAAAGTAGCGGAGAAGCCTTTGAATTTTACTTGCATTCATAGTTGGGGTGCTAACAGAACAGTTCTCGACGGGACCCTAGTTTTGGATTCGGCTAACAAGGTATCTGTTAATCATGCGCTTGGCTTGAACTTGTAAACTGAAGTACACATACTAGCACGAGGGGGCAGCGCTATCGAACCTTCTTACGACATTGCGAAGAATTCGTGGGATTTCTCTGTTTCAAGGAAGTTTTATGGCGATGATGCATTCAAGGCTACGTGCCAGACTACAACCAAGGAACTGGGATTAGAATGGACAAGGAATGTGAAGTCCAATGGAAATTTCAAGGTAGGTGATTTTGTTATTTTATTTTTGTAACTTTTTAATGCTTAATCCAGAATTTCTGGTAGGGTAACCTAGCAGTCAAAGGACATTAAGAAACCGAAAAGGTGTGAGTTTAATTGTGTTGACCACCTACCTTGAAATTAATTTTTATTAGTTTTCTTGTCGTGAGAATAGTCAAGGTAACGCATAAGCTGACTCGGAAATTCACGGATAAAAAAGATAAAGAAAAAAAAGAATCTGTGGTATGATTAGTCATTCAAAAGAAGGGAGCTCATATGATGTTTTGTGTACTTTTGAACATGTCTGATTCTTCTAATTGAATCACTATTTAGGAGTTTGATATAATGAAATTATATCGAGCCATATCTGTGAAGGCGCAGGGTTTCCAATAGCTATTACTTGATTTTCTATTGACTTTGCCTCCGGTAATCTGATGTTGATGATTACCCTTTTTATAAAAAAAACATACTTGTTTGGTTTGGGTCGATTATTTTGGGGACTTTATCATCAAGTCTTTGAAAAAAACTCCCTCTCCCACGTGGGGGATTTGAGGAAATTCAAGACATTATTTATTTGGGCCATAGACAAGCGCAGTGTACAAAAGCAAACAGGATAGACACATTCATTGAGTTAGGCTCTGCATTTCCACATTTGTTAACTCTTACTTGGATTCGAAAGTAGTTAGTTTGGGTTCCGTAAAGAGTGGCACGGTGGTCAAAGACTTGGGTTTTGAAGATGTGCTCTCCTCAAGATCTTAGGTTCAAAACTCACATGTGACATTAATTTGTACACCTCCTGCGTCTCCATTCCTTCGATGTCTCCTGGTGCCTGATGTAGGGACAGACATGGTTACCCCGAGTATAGTGGAGTAAAACTTTGATTTCTCGGGTTAAAAAAAAAAGTAGACTAATAGTTGGGGTTGAGTTACACAATGCAGTTCTTTGGAGTGTTAACCTTTCTTTTTAATAAGAAACGAAAACCATTTTCGTTGATTAAGAGGAGAGGGTCAATCTAAGAACAATAAAGCATCAACAAGTCTTGTAACTTTGTTTTGATAGGAGCTGAATCTTATAACTCTCGGGAAGTTGAACATCCAATTCCGGCACCTATGAAAGAAAGAGAGAAGTAGGGTGCGGTTCACTCGAGAAAGAGCAATTGTTTCGCTCACATGAACAATCGCCTTCTTGTCAACAGCTAAATCCATACGAGTTTAAAGGGTGTGGAAGCACTAATAAGAAATGAGTTCAATCCATACGAGTTTTCGGGGTGGGGCTCCATTGACACCCACTTACATGTAGCCAGTTGAAATGAGAACAAAAGTGGTTTCAAGCTGAGGTTCTGGTTGGAATCTGCTGTGTATTTCCACTGAAACTGGTTTGTGGTTTTATCAATTCGTAACTAGATTGTTTATCCTTGGTGGAAATGGCATTGACATTATGGGATAAAAATGTAATAACACCTGACTCAGTGCTGTGCTCTGGTAGCTGAACACGATAGAGAGCCCAGTGGTTAAGAGAGTTTGAAAACCAACAAAATTATGGATTCAATTTATAGCGATTATCTATTTAAGAAATATTTTTCACAAGTTTCTTTAGCATCCAAATATTATACGGTCAGACGATATGTTTGATGAAAATAATTTATTGAAGTGGACGTAAGTTGATTCTAAGTTGATTCTCGATCAAATTATTGCGATAAAATTAATGTAAACTTTCATGTCAGTTTCTTTTAAGCAATCTTTTGTTGTGCAGATTGTAGCATCAGTCTACCTGGCAGATGAATAA

mRNA sequence

ATGTCCCTAAAAAGTTGGGGTGCTAACAGAACAGTTCTCGACGGGACCCTAGTTTTGGATTCGGCTAACAAGTTTTATGGCGATGATGCATTCAAGGCTACGTGCCAGACTACAACCAAGGAACTGGGATTAGAATGGACAAGGAATGTGAAGTCCAATGGAAATTTCAAGATTGTAGCATCAGTCTACCTGGCAGATGAATAA

Coding sequence (CDS)

ATGTCCCTAAAAAGTTGGGGTGCTAACAGAACAGTTCTCGACGGGACCCTAGTTTTGGATTCGGCTAACAAGTTTTATGGCGATGATGCATTCAAGGCTACGTGCCAGACTACAACCAAGGAACTGGGATTAGAATGGACAAGGAATGTGAAGTCCAATGGAAATTTCAAGATTGTAGCATCAGTCTACCTGGCAGATGAATAA

Protein sequence

MSLKSWGANRTVLDGTLVLDSANKFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE

Homology

[Close]

BLAST of Sed0017102 vs. NCBI nr
Match: XP_038903165.1 (outer envelope pore protein 24, chloroplastic [Benincasa hispida])

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 53/109 (48.62%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 3   LKSWGANRTVLDGTLVLDSAN--------------------------------------- 62
           + SW  NRTVLDGTLVLDSAN                                       
Sbjct: 114 IHSWADNRTVLDGTLVLDSANKVSANHALGSGNCKLKYTYVHEGATTFEPSYDVAKNSWD 173

Query: 63  -----KFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
                K YGDD FKAT QTT+K LGLEWTRN+KS+GNFKIVASV LADE
Sbjct: 174 FAVSRKVYGDDVFKATYQTTSKALGLEWTRNLKSSGNFKIVASVNLADE 222

[Close]

BLAST of Sed0017102 vs. NCBI nr
Match: KAG7037850.1 (Outer envelope pore protein 24, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 51/109 (46.79%), Postives = 54/109 (49.54%), Query Frame = 0


Query: 3   LKSWGANRTVLDGTLVLDSAN--------------------------------------- 62
           + SWG NRTVLDGTLV DSAN                                       
Sbjct: 88  IHSWGDNRTVLDGTLVFDSANKVSANHALGSGNCKLKYSYVHEGVTTFEPSYDVAKNSWD 147

Query: 63  -----KFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
                K YGDD  K T QTTTK LGLEWTRN+KS+GNFKIVASV L DE
Sbjct: 148 FSVSRKVYGDDVLKGTYQTTTKALGLEWTRNLKSSGNFKIVASVNLGDE 196

[Close]

BLAST of Sed0017102 vs. NCBI nr
Match: XP_023525922.1 (outer envelope pore protein 24, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 51/109 (46.79%), Postives = 54/109 (49.54%), Query Frame = 0


Query: 3   LKSWGANRTVLDGTLVLDSAN--------------------------------------- 62
           + SWG NRTVLDGTLV DSAN                                       
Sbjct: 88  IHSWGDNRTVLDGTLVFDSANKVSANHALGSGNCKLKYSYVHEGVTTFEPSYDVAKNSWD 147

Query: 63  -----KFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
                K YGDD  K T QTTTK LGLEWTRN+KS+GNFKIVASV L DE
Sbjct: 148 FSVSRKVYGDDVLKGTYQTTTKALGLEWTRNLKSSGNFKIVASVNLGDE 196

[Close]

BLAST of Sed0017102 vs. NCBI nr
Match: XP_008466586.1 (PREDICTED: outer envelope pore protein 24, chloroplastic-like [Cucumis melo] >TYK19617.1 outer envelope pore protein 24 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 49/109 (44.95%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 3   LKSWGANRTVLDGTLVLDSAN--------------------------------------- 62
           + SW  NRT+LDGTLV DSAN                                       
Sbjct: 88  IHSWADNRTILDGTLVFDSANKVSANHTLGSGNCKLKYTYVHEGATTFEPSYDVAKNSWD 147

Query: 63  -----KFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
                K YGDD FKAT QTT+K LGLEWTRN+KS+GNFK+VASV +ADE
Sbjct: 148 FAVSRKVYGDDVFKATYQTTSKVLGLEWTRNLKSSGNFKVVASVNMADE 196

[Close]

BLAST of Sed0017102 vs. NCBI nr
Match: XP_022976348.1 (outer envelope pore protein 24B, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-13
Identity = 51/109 (46.79%), Postives = 54/109 (49.54%), Query Frame = 0


Query: 3   LKSWGANRTVLDGTLVLDSANKF------------------------------------- 62
           + SW  NRTVLDG LVLDSANKF                                     
Sbjct: 88  IHSWADNRTVLDGNLVLDSANKFSANHALGSGNCKLKYTYVHKHATTFEPSYDFAKNSWD 147

Query: 63  -------YGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
                  Y DD  KAT QTTTK LGLEWTRN+KS GNFKIVASV +ADE
Sbjct: 148 FSISRKVYDDDVLKATYQTTTKALGLEWTRNLKSRGNFKIVASVNMADE 196

[Close]

BLAST of Sed0017102 vs. ExPASy Swiss-Prot
Match: O49929 (Outer envelope pore protein 24, chloroplastic OS=Pisum sativum OX=3888 GN=OEP24 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-10
Identity = 42/109 (38.53%), Postives = 51/109 (46.79%), Query Frame = 0


Query: 3   LKSWGANRTVLDGTLVLDSAN--------------------------------------- 62
           + S G NRT+LDGTLV D +N                                       
Sbjct: 89  IHSKGDNRTILDGTLVWDPSNKVSANYAVESGNCKLKYSYNHKGLTTIEPTYDVAKNSWD 148

Query: 63  -----KFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
                K YGDD+ KA+ QT++K LGLEWTRN K  G FK+VASV LA+E
Sbjct: 149 FAVSGKVYGDDSLKASYQTSSKVLGLEWTRNSKQTGCFKVVASVNLAEE 197

[Close]

BLAST of Sed0017102 vs. ExPASy Swiss-Prot
Match: Q1H5C9 (Outer envelope pore protein 24A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP24A PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-08
Identity = 36/105 (34.29%), Postives = 47/105 (44.76%), Query Frame = 0


Query: 7   GANRTVLDGTLVLDSAN------------------------------------------- 66
           G NRT++DG+ V+D AN                                           
Sbjct: 93  GDNRTIVDGSFVIDPANKLSANYMVGTKNCKLKYTYVHGGIATFEPCYDVAKNMWDFAIS 152

Query: 67  -KFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
            K YG D  KAT QT++K LGLEW+ N KS G+FK+ AS+ LA+E
Sbjct: 153 HKLYGGDNLKATYQTSSKMLGLEWSNNSKSTGSFKVCASMNLAEE 197

[Close]

BLAST of Sed0017102 vs. ExPASy Swiss-Prot
Match: Q8H0Y1 (Outer envelope pore protein 24B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP24B PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 37/103 (35.92%), Postives = 49/103 (47.57%), Query Frame = 0


Query: 9   NRTVLDGTLVLDSANK-------------------------------------------- 68
           NRT++DG+LV+DSANK                                            
Sbjct: 96  NRTIVDGSLVIDSANKLSANHMVGTNNCKIKYTYAHGGLATFEPCYDLAKNTWDFAVSRR 155

[Close]

BLAST of Sed0017102 vs. ExPASy Swiss-Prot
Match: B8ANR3 (Outer envelope pore protein 24, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OEP24 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-05
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 24  KFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
           KF G DA KAT Q +TK L L+WTR+ K   +FK+ AS  L+D+
Sbjct: 165 KFQGGDAIKATYQASTKLLALDWTRDSKIGASFKVAASFDLSDQ 208

[Close]

BLAST of Sed0017102 vs. ExPASy Swiss-Prot
Match: Q75IQ4 (Outer envelope pore protein 24, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=OEP24 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-05
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 24  KFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
           KF G DA KAT Q +TK L L+WTR+ K   +FK+ AS  L+D+
Sbjct: 165 KFQGGDAIKATYQASTKLLALDWTRDSKIGASFKVAASFDLSDQ 208

[Close]

BLAST of Sed0017102 vs. ExPASy TrEMBL
Match: A0A5D3D7T8 (Outer envelope pore protein 24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00030 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.1e-14
Identity = 49/109 (44.95%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 3   LKSWGANRTVLDGTLVLDSAN--------------------------------------- 62
           + SW  NRT+LDGTLV DSAN                                       
Sbjct: 88  IHSWADNRTILDGTLVFDSANKVSANHTLGSGNCKLKYTYVHEGATTFEPSYDVAKNSWD 147

Query: 63  -----KFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
                K YGDD FKAT QTT+K LGLEWTRN+KS+GNFK+VASV +ADE
Sbjct: 148 FAVSRKVYGDDVFKATYQTTSKVLGLEWTRNLKSSGNFKVVASVNMADE 196

[Close]

BLAST of Sed0017102 vs. ExPASy TrEMBL
Match: A0A1S3CRS8 (outer envelope pore protein 24, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103503959 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.1e-14
Identity = 49/109 (44.95%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 3   LKSWGANRTVLDGTLVLDSAN--------------------------------------- 62
           + SW  NRT+LDGTLV DSAN                                       
Sbjct: 88  IHSWADNRTILDGTLVFDSANKVSANHTLGSGNCKLKYTYVHEGATTFEPSYDVAKNSWD 147

Query: 63  -----KFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
                K YGDD FKAT QTT+K LGLEWTRN+KS+GNFK+VASV +ADE
Sbjct: 148 FAVSRKVYGDDVFKATYQTTSKVLGLEWTRNLKSSGNFKVVASVNMADE 196

[Close]

BLAST of Sed0017102 vs. ExPASy TrEMBL
Match: A0A6J1ILV0 (outer envelope pore protein 24B, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476776 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.2e-14
Identity = 51/109 (46.79%), Postives = 54/109 (49.54%), Query Frame = 0


Query: 3   LKSWGANRTVLDGTLVLDSANKF------------------------------------- 62
           + SW  NRTVLDG LVLDSANKF                                     
Sbjct: 88  IHSWADNRTVLDGNLVLDSANKFSANHALGSGNCKLKYTYVHKHATTFEPSYDFAKNSWD 147

Query: 63  -------YGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
                  Y DD  KAT QTTTK LGLEWTRN+KS GNFKIVASV +ADE
Sbjct: 148 FSISRKVYDDDVLKATYQTTTKALGLEWTRNLKSRGNFKIVASVNMADE 196

[Close]

BLAST of Sed0017102 vs. ExPASy TrEMBL
Match: A0A6J1J3S8 (outer envelope pore protein 24, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481014 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 50/109 (45.87%), Postives = 54/109 (49.54%), Query Frame = 0


Query: 3   LKSWGANRTVLDGTLVLDSAN--------------------------------------- 62
           + SWG +RTVLDGTLV DSAN                                       
Sbjct: 88  IHSWGDSRTVLDGTLVFDSANKVSANHALGSGNCKLKYSYVHEGVTTFEPSYDVAKNSWD 147

Query: 63  -----KFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
                K YGDD  K T QTTTK LGLEWTRN+KS+GNFKIVASV L DE
Sbjct: 148 FSVSRKVYGDDVLKGTYQTTTKALGLEWTRNLKSSGNFKIVASVNLGDE 196

[Close]

BLAST of Sed0017102 vs. ExPASy TrEMBL
Match: A0A0A0LIV8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855400 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.7e-13
Identity = 48/109 (44.04%), Postives = 56/109 (51.38%), Query Frame = 0


Query: 3   LKSWGANRTVLDGTLVLDSAN--------------------------------------- 62
           + SW  +RT+LDGTLV DSAN                                       
Sbjct: 88  IHSWADSRTILDGTLVFDSANKVSANHALGSGNCKLKYTYVHEGATTFEPSYDVAKNSWD 147

Query: 63  -----KFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
                K YGDD FKAT QTT+K LGLEWTRN+KS+GNFK+VASV +ADE
Sbjct: 148 FAVSRKVYGDDVFKATYQTTSKVLGLEWTRNLKSSGNFKVVASVNMADE 196

[Close]

BLAST of Sed0017102 vs. TAIR 10
Match: AT1G45170.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42960.1); Has 60 Blast hits to 60 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 5.0e-12
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 7   GANRTVLDGTLVLDSANKFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLAD 66
           G NRT++DG+ V+D ANK   +  + AT QT++K LGLEW+ N KS G+FK+ AS+ LA+
Sbjct: 93  GDNRTIVDGSFVIDPANKLSAN--YMATYQTSSKMLGLEWSNNSKSTGSFKVCASMNLAE 151

Query: 67  E 68
           E
Sbjct: 153 E 151

[Close]

BLAST of Sed0017102 vs. TAIR 10
Match: AT1G45170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42960.1); Has 62 Blast hits to 62 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-09
Identity = 36/105 (34.29%), Postives = 47/105 (44.76%), Query Frame = 0


Query: 7   GANRTVLDGTLVLDSAN------------------------------------------- 66
           G NRT++DG+ V+D AN                                           
Sbjct: 93  GDNRTIVDGSFVIDPANKLSANYMVGTKNCKLKYTYVHGGIATFEPCYDVAKNMWDFAIS 152

Query: 67  -KFYGDDAFKATCQTTTKELGLEWTRNVKSNGNFKIVASVYLADE 68
            K YG D  KAT QT++K LGLEW+ N KS G+FK+ AS+ LA+E
Sbjct: 153 HKLYGGDNLKATYQTSSKMLGLEWSNNSKSTGSFKVCASMNLAEE 197

[Close]

BLAST of Sed0017102 vs. TAIR 10
Match: AT5G42960.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 8.8e-09
Identity = 37/103 (35.92%), Postives = 49/103 (47.57%), Query Frame = 0


Query: 9   NRTVLDGTLVLDSANK-------------------------------------------- 68
           NRT++DG+LV+DSANK                                            
Sbjct: 96  NRTIVDGSLVIDSANKLSANHMVGTNNCKIKYTYAHGGLATFEPCYDLAKNTWDFAVSRR 155

The following BLAST results are available for this feature:

BLAST of Sed0017102 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903165.1	1.3e-14	48.62	outer envelope pore protein 24, chloroplastic [Benincasa hispida]	[more]
KAG7037850.1	1.1e-13	46.79	Outer envelope pore protein 24, chloroplastic [Cucurbita argyrosperma subsp. arg...	[more]
XP_023525922.1	1.1e-13	46.79	outer envelope pore protein 24, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_008466586.1	1.5e-13	44.95	PREDICTED: outer envelope pore protein 24, chloroplastic-like [Cucumis melo] >TY...	[more]
XP_022976348.1	1.9e-13	46.79	outer envelope pore protein 24B, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Sed0017102 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49929	1.2e-10	38.53	Outer envelope pore protein 24, chloroplastic OS=Pisum sativum OX=3888 GN=OEP24 ...	[more]
Q1H5C9	2.5e-08	34.29	Outer envelope pore protein 24A, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q8H0Y1	1.2e-07	35.92	Outer envelope pore protein 24B, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
B8ANR3	1.2e-05	52.27	Outer envelope pore protein 24, chloroplastic OS=Oryza sativa subsp. indica OX=3...	[more]
Q75IQ4	1.2e-05	52.27	Outer envelope pore protein 24, chloroplastic OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of Sed0017102 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D7T8	7.1e-14	44.95	Outer envelope pore protein 24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CRS8	7.1e-14	44.95	outer envelope pore protein 24, chloroplastic-like OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1ILV0	9.2e-14	46.79	outer envelope pore protein 24B, chloroplastic-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1J3S8	2.1e-13	45.87	outer envelope pore protein 24, chloroplastic-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A0A0LIV8	2.7e-13	44.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855400 PE=4 SV=1	[more]

BLAST of Sed0017102 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45170.2	5.0e-12	52.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G45170.1	1.8e-09	34.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G42960.1	8.8e-09	35.92	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034626	Outer envelope pore protein 24	PANTHER	PTHR35284	OUTER ENVELOPE PORE PROTEIN 24A, CHLOROPLASTIC-RELATED	coord: 24..66
None	No IPR available	PANTHER	PTHR35284:SF6	HOP-INTERACTING PROTEIN THI045	coord: 24..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017102.1	Sed0017102.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034765	regulation of ion transmembrane transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0022843	voltage-gated cation channel activity