Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGACGTTCGATTGTGCGAAGAGACAGAGAAACTGAGAGATGCAGTAAAAGCTGAAGCTACTACCATTTTGAGCGAAGCTTGTGAGAATGGCGCTGTGTTATCGAGCTTCACTGTGAAACCAAAAGAGACTAATGGAAATTACAACAATATCGATGAGGCTCCAAAATTTACTAAATTGGCCCCCCATTTGTACTACTCTTACATATTTGCCCAAGGCCCAACTGGCCGGCCCATGTTTCAAATATTTGTTTCTGTTTTTTTGAGGGTTTCCGACCTAATAGTATTTAAAATAAGGGTTATATTAAGTTACAACGGTCTATTTCGCTTTGTTTCTCTCTCATCCACGCATGGGCTTAGGGCGTCATGGCCATTGATATATCTTTTTAAAAAATTAAGAAAATATTGGAATTCTTCCACTTCCTCTTTCTTTTTCTTCTATTTTCTTATTCCTCATCCCTTTCTTTTCTCCTTCTCGTTGGTGTGAGTTGCAGGCGGGTGATGGACGCACGTGGCAAGCATCTTCCGACGCGGGGTGATCAGATCTTGTGCATCTTCCAGCACGAGGCAAGCAGATTCAACACATCTCTAGCGCAAGGAGAGCAGATTCGGCGCGAGACGAATCAACGATGTGGGGTTCTGGATGTTAACGATCAACGACGCTGGGTGGTTTATATTATACATGGACACAGTTATATTGAAACTACTTTATTTTTTTTTCATATATATATCTATTCATTTTCGATATATTGGGTAATTTTTTGATATAAATATATATCTTCAATTTTTATTGAGGCTTTTTGTTTTATGATCTATATATATTGAACATTAAATTCATAATTTACGATTTATATACGATGGTAGATAACTTTGTTGATTTCAAAATCATGAGGTTTAAATTGAATTTGAAACAATCACATTAATTGAGAATTACATATTTATGTTAAGAAGCTTCTGTAAAATTTACTTCAATGTAATTTAGTCAATCTTACTAGTATATTTCATATATTGATTAGAATACTTGCAAACATTTGAGACAAATGTTCTAATGTATATTTAAAAATAACCACAATCTAAACTATGGTATATATAAGATAATAACGCAAAATATAAACAAACTCAAAATAAACAACAAACTATAATAGACAAACTCAAATAAGTTAGATCATCATATAAACAATAAGTCCATACATATCATAATACCTCAAACCTATGTCAAATAAACAGTGAAATATATTATATTAGAACAAATATTACTCAAACAAACAATGTAATATAAATGCATTTATGGGAAAAAAATATACTATATGAGAACAAATACGTTAGAACATTTATTTTATCTCCCCATAATAAATGTGTTTTCTCTTTTCATAAGCCTGGTAAATAGAGGAATATATATCTAAATCGGACAAAAAATAATAAAAAAGGGGCAAATTAAATGCATTTTCTATCTCCGTAATAAATTAATTTTCTCTTCCTATTATTAAGAGAGCTTCGTAAATAAGAAAATATATATAAAAATAGGACAAGAAAGTAATAAAAATGACAAATTTGTCAAAAAAAAAAAAAAATAATACCAAAAGCCTTTATTGAAAAAATTCAAAATTAAAGACATTTTTAAAAATATATGGCCAAATATAGTTTTTTTTAATGTAAAAATCTCTTTTTTTAATGTTTATCTGTGTGCTAGTCGTCCATAGATTATATTTTATAGATTAGAAATAGTCTATCATACATATATATATATATATAAATTATCTCTAATTAACATAAAAATAATTTATTAGGAAAATAAATCTATCAAGTCTACCTATCACCTATAGACATATAAATGGAGATAAAATCATATAAATTTTCTATTAGTGGTATACATCTTATAATTTGGATTGATTTAAGAAATAAATGTTTTTTAAAAATTGATTTTCATTTTAACACTTTTGATAAGAACAATTTATAATAAATACACTATGACTTTTAAAGTTAATTTTGAGTGGTTGCCAAAATATTCTATTTATTTTAAAATGACTTATTTTTTAAATTAAATATTTGAAAAGATATTCCAAACATATCAATAAATTAGACCCTCCAAAAGAATAAAAAGTTGTCATATTTGCAAATTATTTATTTATGTGACATGACCATAAATTTTGGCATTTAATAAAAGTGTCCCATATTTAATTTTGAAATTTTAATTTGGGGAGAAATGTCTTGTTTTAGCTCACACTTGTCAAGGGTATCCAATTTTACTCTAAATTTTTAATTTCAATGAAATATGAGATGTGAATATATTTTTAAATTTTATAACAAAAATAGTAATAAATAACAAAAGAAATTTTTTTTTGAAAAACCAACAATAAACTAATATTAGGAACTAAGTTTAAGATTATTTAAAATACAAGACTAAAATTTATTAACTAAAAAAATTAAAATATAAAAGAGATAAAACCAAATAAATTATATATCTATCCTCCGTTTGAATAATAATAAAAAAAAAGTTTAAAAAATGATTTTAAAGTGTGTGATTTGAAATCTGAAAAAATAATTTTAAATTAATTATTTCATTTGTAAGAAGAAAAATTTTAAATGAAGATATTTAAAATTTTGTGTTTGGCTGATAGACTACAAAAAAATAAAATTAGGATTTTGTTGAAAGATAATTGATTAAAAGACCAATCTTTCAAGTCCATTATGAGTTTTGCCCCGTAAACTTAATGACCGACTCCTTAAATCATTTTCAACCAATTTTACAAAATCACCTTACTTCTTTTTATATTCTGCATCTTCTACGTTTTCCTTTCCTTTTTTATTTTCTTCTTCTTCTTCGACTAGATTCCACGAGGTTCTCTTCTTCTTCTTTTTTTTTTATTTTTTTTATTTTTTTATTTTTTTTTCTTTCCTTTCTCACTCTTCTTCTTCTCTGACTAGTTCCGACGAGTCGAAACAATCAACTTCTTGTTCTTTCCCGCGTTTCAGTTTGTGATGAATGAGACCGATCATCGGAGAGTAAGAGAGTGAGAATGTGGGAGTGCAAGAAAGTGAGAAAGAGAAGGAAAATCAACAGGACAAGGAAGTTGAAAGCGAAGAGTAAAGAGTCAAGTCTAATGCACGTGTTTTCATTTTAGTAATTTTACCTAAATAGGACGTGAGCCAAATTATTATTTAAAAAAATAAATAAATAAACTTAAATTCAAAGGGTACTTCAATTTTCATTTATTTAAATTAGATCTCAGTCGTCTTCCTCGATATCTCTCACTCTCTCGCCTCGCCAAGCCACAGCGCCGCCTCCGTCCGACCTCCGCCGCTCCGCTGCTGCACCTCCGTCCGACGTTCGTCCAGCCGCCGAAGTTTCGCGCCGGTGAGTCCTCTTCCATCTCTATCTTTCTTTCTTTCTCTCTCTAAGATCTGTTTTCTGCATAGTGTTTCCGCCGCGCTGGTCATGAATTTTGGAAAAAAGAAAAAAAAAATTAAAGAGGAGCAAGAATGTTAACTTAGGAGGTATAAAGTTTAAGGTTGAATGCGATGGAAATTGAAATCGAGAGAATTTGGAGCTATAAATTTGATTTTTCACCTTACTTTAAAAATTAAATTTGGTTCCAACTTTCTCCCAAAAGAGTAAACTGCTGACGCTATTGATCTCTCCCAATTCTCCTCCTCGCTTGATAACCTCTCTTTCAGTTTTCACGCTTGCCTTAGCTTCGAGCAAGTGACAAGTAGATCGATTGCAGATTTGCAGTTTCTCTGAGCCCTTTACTCTCCATTGCGGTCTGCTACTTGTCCCACTTTCTGTTTCGGTATTGTAATCGTTTCTTTTAAAGATTGAACCGTACCACAAGGAAGGAAACTGATACGCTTTTCAAATTTGTTTTTCTCAACTTTGGTGGGTTGAATTCAGAGGATTCGATGGGTTTCCCTGCCAATCTTCTTCCTCCTCCGCTGGGATCTTTTCAATTTCCCCCTCTCTTTTCCATTTTCGTAGATTATTGTCTTCTTTGTTGATTCTGGTTTTGTTCCTCTTTTTCTGGCTCAGTTTTATCCTCTTCCTCTGCCCCGGCAGTATGAGATTCTCTTTTCCCCCAATTTGCTACTTCCCCATTCTCTAAAAGAGAGAGACAGATGGCTTGAATAACCCTCTGTGTACAGTACCTTTTTGGAGGCCGAACTTTGAACAGGTTTCTCCCCTCATTAACAGAAGACTTTCATCTTTCAGAGTGCCATCGCTGTTGCAATCTTTCACTTTTTGGGTTCAAAGCTTTTAACTCATGAACAAATTATTGATGGTCTGCATTTCTTAATTTGTTTTCCATTTTTATTTCCTTGAATCTTTGCATATTTTGCTGCTAAATCATCTTGAAAAGCATTAGTCCTGTGAGTTTTCCCCCCGTAGCTGTTTGGTATCCCGATGTATATATGTATGTATATCTATGTATCTATGTATCTATCTATATATATATATATCCTTTTTCTTTTTTTTTTTTTTGAGAAGAGAAACGATTTCGTTTCATTGACAGGAAGGGAGAGAACCCTAACACATCTGTAGGTGAATTACATGACGTTCTCCAATGAGAAATTAACAAAGATAGGCTATATGTATTTAAAGGGTGTTCACATTTACACCGATGCATAACATGAAAAAGAATTAAATTCATAAAGTTATTAAAGGAAGAGAAAAGATCCCTGAAAATTCTATCAAGAGCCAACTATAAAGTCTTCTTTGCCCCATGGAAAGGGTGACCCGTCAAAATTGAAGTGAGGAAATCAAAGATGGTGTTAGGCTAAGGTATGGACCAATCGAAAGTAGCAAGAATAATGTCCCAGTATCTAGAAGCAAAAGGACAGTGAGCAAATAGGTGATTAGGAATTTCTGAAGCTATACAACACATAACACACCAAGATGGAGAAAGGTGTTTATGTGTAGGAGTAGTATGGTATTAGTAAGGGCATTGGGGTAATTAGTTAGGGAGTTGGTTAGGGTATTTGGTTATTAAATAGAGGGAGGGGGGTTGAGGAAAGGAAGCAATTGTTGAGTGATTTAGAGCTTGGGTTAGCATACTCAAGAGGAGAGGTTCTAAGTGCCTAATACTTGGTTTATCTTGTTTTTCTTGATCATTTATATTTCAATATATTTCAGTTCTTGATTCCTGGTAGGTGGTACTGTAACAAAAGGTTGATAAATGGCATTCTCCTTTGTAGTCAATTGGTTGCGTTAACAACAACTTCAAGGCTAAGTTCCCAAAGAAAGATTTTAATCTTCCTAAGCATCTTGCCAAATCACTGTCCCTTTGTTTTTCTGTCTTGGTAGGCTAAAGTGGAATATGAAAGTTTAGGAACCAAAGTGCAATCGATATGAAAGTTCAAGATCTTGATTGTTTTCTCATGCATTTTAGCATTTCACAAGAGACTAGACTCTAGGTACTTACTTTCTTGGTTGTCATATATTTAGGTACTTGATATGGACAGACTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTGGAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATTGAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAGTAG
mRNA sequence
ATGGATGACGTTCGATTGTGCGAAGAGACAGAGAAACTGAGAGATGCAGTAAAAGCTGAAGCTACTACCATTTTGAGCGAAGCTTGTGAGAATGGCGCTGTGTTATCGAGCTTCACTGTGAAACCAAAAGAGACTAATGGAAATTACAACAATATCGATGAGGCTCCAAAATTTACTAAATTGGCCCCCCATTTATCTCAGTCGTCTTCCTCGATATCTCTCACTCTCTCGCCTCGCCAAGCCACAGCGCCGCCTCCGTCCGACCTCCGCCGCTCCGCTGCTGCACCTCCGTCCGACGTTCGTCCAGCCGCCGAAGTTTCGCGCCGACTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTGGAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATTGAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAGTAG
Coding sequence (CDS)
ATGGATGACGTTCGATTGTGCGAAGAGACAGAGAAACTGAGAGATGCAGTAAAAGCTGAAGCTACTACCATTTTGAGCGAAGCTTGTGAGAATGGCGCTGTGTTATCGAGCTTCACTGTGAAACCAAAAGAGACTAATGGAAATTACAACAATATCGATGAGGCTCCAAAATTTACTAAATTGGCCCCCCATTTATCTCAGTCGTCTTCCTCGATATCTCTCACTCTCTCGCCTCGCCAAGCCACAGCGCCGCCTCCGTCCGACCTCCGCCGCTCCGCTGCTGCACCTCCGTCCGACGTTCGTCCAGCCGCCGAAGTTTCGCGCCGACTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCGGGAGCAGCTAATGTCCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCTGCTCTTGAGAATTTTAAACAGAAATGGGAGCTATTCAGGGTTGCTTGTGATCGAGCTGAGGAGTTTGTGGAGTCCGTGAAGCAAAGGATAGGATCAGAATGCCTTGTTGATGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGGCCACCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGGTTGGAACAGATGAGCAAAGCTGTGAGATGGCTTGTAATTGAGTTGCAGCATGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCCATCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAGTAG
Protein sequence
MDDVRLCEETEKLRDAVKAEATTILSEACENGAVLSSFTVKPKETNGNYNNIDEAPKFTKLAPHLSQSSSSISLTLSPRQATAPPPSDLRRSAAAPPSDVRPAAEVSRRLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVESVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHPSAPFDARFTEDATQ
Homology
BLAST of ClCG11G004520 vs. NCBI nr
Match:
XP_038902813.1 (mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida] >XP_038902814.1 mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida])
HSP 1 Score: 265.4 bits (677), Expect = 5.0e-67
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0
Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63
Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
SVKQRIGSECLVDEATGSLAGKSGQA TTG+PPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64 SVKQRIGSECLVDEATGSLAGKSGQAATTGIPPISAVRLEQMSKAVRWLVIELQHGSGAA 123
Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
ASASAHSH SAPFDARFTEDATQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDATQ 146
BLAST of ClCG11G004520 vs. NCBI nr
Match:
KAA0045925.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa])
HSP 1 Score: 264.2 bits (674), Expect = 1.1e-66
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0
Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 8 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 67
Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 68 SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 127
Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
ASASAHSH SAPFDARFTEDATQ
Sbjct: 128 ASASAHSHQSAPFDARFTEDATQ 150
BLAST of ClCG11G004520 vs. NCBI nr
Match:
XP_008457936.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo])
HSP 1 Score: 262.7 bits (670), Expect = 3.3e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0
Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63
Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64 SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 123
Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
ASASAHSH SAPFDARFTED TQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDTTQ 146
BLAST of ClCG11G004520 vs. NCBI nr
Match:
XP_004148855.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >XP_031736355.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >KGN61780.1 hypothetical protein Csa_006151 [Cucumis sativus])
HSP 1 Score: 262.7 bits (670), Expect = 3.3e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0
Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63
Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
SVKQRIGSECLVDEATGSLAGKSGQ+ TT LPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64 SVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGSGAA 123
Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
ASASAHSH SAPFDARFTEDATQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDATQ 146
BLAST of ClCG11G004520 vs. NCBI nr
Match:
TYK13665.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa])
HSP 1 Score: 262.7 bits (670), Expect = 3.3e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0
Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 8 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 67
Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 68 SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 127
Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
ASASAHSH SAPFDARFTED TQ
Sbjct: 128 ASASAHSHQSAPFDARFTEDTTQ 150
BLAST of ClCG11G004520 vs. ExPASy Swiss-Prot
Match:
Q84VW5 (Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana OX=3702 GN=MED32 PE=1 SV=1)
HSP 1 Score: 177.6 bits (449), Expect = 1.8e-43
Identity = 101/150 (67.33%), Postives = 116/150 (77.33%), Query Frame = 0
Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
+VDSLN AY++FV +A VLE+ E++G QK TD ALENFK+KWELFRVACD+AEEFVE
Sbjct: 4 IVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEEFVE 63
Query: 170 SVKQRIGSECLVDEATG---SLAGKSGQATTTG----LPPISAVRLEQMSKAVRWLVIEL 229
SVKQRIGSECLVDEATG + AG A TG LPPISAVRLEQMS+AVRWLV+EL
Sbjct: 64 SVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLVLEL 123
Query: 230 QHGSGAAASASAHSHPSAPFDARFTEDATQ 253
Q GSG A S HS S FD+RF+ED+TQ
Sbjct: 124 QRGSG-VAPGSVHS-SSTGFDSRFSEDSTQ 151
BLAST of ClCG11G004520 vs. ExPASy TrEMBL
Match:
A0A5A7TWZ7 (Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G004640 PE=4 SV=1)
HSP 1 Score: 264.2 bits (674), Expect = 5.4e-67
Identity = 139/143 (97.20%), Postives = 141/143 (98.60%), Query Frame = 0
Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 8 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 67
Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 68 SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 127
Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
ASASAHSH SAPFDARFTEDATQ
Sbjct: 128 ASASAHSHQSAPFDARFTEDATQ 150
BLAST of ClCG11G004520 vs. ExPASy TrEMBL
Match:
A0A5D3CQ46 (Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001830 PE=4 SV=1)
HSP 1 Score: 262.7 bits (670), Expect = 1.6e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0
Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 8 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 67
Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 68 SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 127
Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
ASASAHSH SAPFDARFTED TQ
Sbjct: 128 ASASAHSHQSAPFDARFTEDTTQ 150
BLAST of ClCG11G004520 vs. ExPASy TrEMBL
Match:
A0A0A0LIN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1)
HSP 1 Score: 262.7 bits (670), Expect = 1.6e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0
Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63
Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
SVKQRIGSECLVDEATGSLAGKSGQ+ TT LPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64 SVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGSGAA 123
Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
ASASAHSH SAPFDARFTEDATQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDATQ 146
BLAST of ClCG11G004520 vs. ExPASy TrEMBL
Match:
A0A1S3C6T6 (mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 GN=LOC103497499 PE=4 SV=1)
HSP 1 Score: 262.7 bits (670), Expect = 1.6e-66
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 0
Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63
Query: 170 SVKQRIGSECLVDEATGSLAGKSGQATTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 229
SVKQRIGSECLVDEATGSLAGKSGQ+ TTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA
Sbjct: 64 SVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGSGAA 123
Query: 230 ASASAHSHPSAPFDARFTEDATQ 253
ASASAHSH SAPFDARFTED TQ
Sbjct: 124 ASASAHSHQSAPFDARFTEDTTQ 146
BLAST of ClCG11G004520 vs. ExPASy TrEMBL
Match:
A0A6J1JH28 (mediator of RNA polymerase II transcription subunit 32-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484308 PE=4 SV=1)
HSP 1 Score: 260.0 bits (663), Expect = 1.0e-65
Identity = 140/146 (95.89%), Postives = 143/146 (97.95%), Query Frame = 0
Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
LVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACD+AEEFVE
Sbjct: 4 LVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVE 63
Query: 170 SVKQRIGSECLVDEATGSLAGKSGQ--ATTTGLPPISAVRLEQMSKAVRWLVIELQHGSG 229
SVKQRIGSECLVDEATGSLAGKSGQ ATTTGLPPISA+RLEQMSKAVRWLVIELQHGSG
Sbjct: 64 SVKQRIGSECLVDEATGSLAGKSGQAAATTTGLPPISAIRLEQMSKAVRWLVIELQHGSG 123
Query: 230 -AAASASAHSHPSAPFDARFTEDATQ 253
AAASASAHSHPSAPFDARFTEDATQ
Sbjct: 124 AAAASASAHSHPSAPFDARFTEDATQ 149
BLAST of ClCG11G004520 vs. TAIR 10
Match:
AT1G11760.1 (MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 177.6 bits (449), Expect = 1.3e-44
Identity = 101/150 (67.33%), Postives = 116/150 (77.33%), Query Frame = 0
Query: 110 LVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDRAEEFVE 169
+VDSLN AY++FV +A VLE+ E++G QK TD ALENFK+KWELFRVACD+AEEFVE
Sbjct: 4 IVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEEFVE 63
Query: 170 SVKQRIGSECLVDEATG---SLAGKSGQATTTG----LPPISAVRLEQMSKAVRWLVIEL 229
SVKQRIGSECLVDEATG + AG A TG LPPISAVRLEQMS+AVRWLV+EL
Sbjct: 64 SVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLVLEL 123
Query: 230 QHGSGAAASASAHSHPSAPFDARFTEDATQ 253
Q GSG A S HS S FD+RF+ED+TQ
Sbjct: 124 QRGSG-VAPGSVHS-SSTGFDSRFSEDSTQ 151
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038902813.1 | 5.0e-67 | 97.20 | mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida] >XP_0... | [more] |
KAA0045925.1 | 1.1e-66 | 97.20 | mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa... | [more] |
XP_008457936.1 | 3.3e-66 | 96.50 | PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo] | [more] |
XP_004148855.1 | 3.3e-66 | 96.50 | mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >XP_031... | [more] |
TYK13665.1 | 3.3e-66 | 96.50 | mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa... | [more] |
Match Name | E-value | Identity | Description | |
Q84VW5 | 1.8e-43 | 67.33 | Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7TWZ7 | 5.4e-67 | 97.20 | Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. maku... | [more] |
A0A5D3CQ46 | 1.6e-66 | 96.50 | Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. maku... | [more] |
A0A0A0LIN7 | 1.6e-66 | 96.50 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1 | [more] |
A0A1S3C6T6 | 1.6e-66 | 96.50 | mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 G... | [more] |
A0A6J1JH28 | 1.0e-65 | 95.89 | mediator of RNA polymerase II transcription subunit 32-like isoform X2 OS=Cucurb... | [more] |
Match Name | E-value | Identity | Description | |
AT1G11760.1 | 1.3e-44 | 67.33 | MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0;... | [more] |