Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGCACCATGGCCTCAAAAGCTTCAAGCCCTAACCCACATTCTACTCTGCCCCACCACCGCTCCGCCGCTCGCTTCTCAATACTTCATCGCCACCAAAATCCCCTGTTACCTCAATTGGGACTACCCCCCTCTCCTCTGCCCTAAATCTTCCATTTTCCCCTTTCTCTCTCTTCACCTCCAATGGGGTTTTTCTCTCTTCCTCAAAAGACTCTCCCGATTCGGCCTCCCCAAAACCTCCTGGCGATCCAAATGCCCTTATCAACTCCCTCCGCCTTTGATTCTCGCTAAAGGCGTCCCCGCTGCTCAATGGGACGACGAACAGAGGACAAACTACGTCAGAATGAGGCTCAAAAGAAAGCGTCTCGGCAGCGATGTTCATCCCTTAATCCCAATTATGATTCCCAATATGTTGCTGTTTTCTCTTCTCCTATGGAATCCATTTTCTTCCGACGATTGA
mRNA sequence
ATGGAAGAAGCACCATGGCCTCAAAAGCTTCAAGCCCTAACCCACATTCTACTCTGCCCCACCACCGCTCCGCCGCTCGCTTCTCAATACTTCATCGCCACCAAAATCCCCTGTTACCTCAATTGGGACTACCCCCCTCTCCTCTGCCCTAAATCTTCCATTTTCCCCTTTCTCTCTCTTCACCTCCAATGGGGTTTTTCTCTCTTCCTCAAAAGACTCTCCCGATTCGGCCTCCCCAAAACCTCCTGGCGATCCAAATGCCCTTATCAACTCCCTCCGCCTTTGATTCTCGCTAAAGGCGTCCCCGCTGCTCAATGGGACGACGAACAGAGGACAAACTACGTCAGAATGAGGCTCAAAAGAAAGCGTCTCGGCAGCGATGTTCATCCCTTAATCCCAATTATGATTCCCAATATGTTGCTGTTTTCTCTTCTCCTATGGAATCCATTTTCTTCCGACGATTGA
Coding sequence (CDS)
ATGGAAGAAGCACCATGGCCTCAAAAGCTTCAAGCCCTAACCCACATTCTACTCTGCCCCACCACCGCTCCGCCGCTCGCTTCTCAATACTTCATCGCCACCAAAATCCCCTGTTACCTCAATTGGGACTACCCCCCTCTCCTCTGCCCTAAATCTTCCATTTTCCCCTTTCTCTCTCTTCACCTCCAATGGGGTTTTTCTCTCTTCCTCAAAAGACTCTCCCGATTCGGCCTCCCCAAAACCTCCTGGCGATCCAAATGCCCTTATCAACTCCCTCCGCCTTTGATTCTCGCTAAAGGCGTCCCCGCTGCTCAATGGGACGACGAACAGAGGACAAACTACGTCAGAATGAGGCTCAAAAGAAAGCGTCTCGGCAGCGATGTTCATCCCTTAATCCCAATTATGATTCCCAATATGTTGCTGTTTTCTCTTCTCCTATGGAATCCATTTTCTTCCGACGATTGA
Protein sequence
MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSLHLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLKRKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD
Homology
BLAST of ClCG01G023240 vs. NCBI nr
Match:
XP_004134687.2 (uncharacterized protein LOC101221431 [Cucumis sativus])
HSP 1 Score: 313.5 bits (802), Expect = 9.9e-82
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0
Query: 1 MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
MEEAPWPQKLQALTHILLCPTTAPPLASQ+FIATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 12 MEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 71
Query: 61 HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
HLQWGFSLFLK+LSRFGLPKTSWRSKCPYQLPPPLILAKGV AQWDDEQR NY RMRL+
Sbjct: 72 HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 131
Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
RKRLGSDVHPLIPIMIPNMLLF+LLLWNPFSS D
Sbjct: 132 RKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSSTD 165
BLAST of ClCG01G023240 vs. NCBI nr
Match:
XP_038883097.1 (uncharacterized protein LOC120074151 [Benincasa hispida])
HSP 1 Score: 310.1 bits (793), Expect = 1.1e-80
Identity = 145/154 (94.16%), Postives = 147/154 (95.45%), Query Frame = 0
Query: 1 MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
MEE PWPQKLQALTHILLCPTTAPPLASQY IATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 11 MEETPWPQKLQALTHILLCPTTAPPLASQYLIATKIPCYLNWDYPPLLCPKSSIFPFLSL 70
Query: 61 HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGV +AQW DEQR NYVRMRL+
Sbjct: 71 HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVHSAQWGDEQRKNYVRMRLR 130
Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
RKRL SDVHPLIPIMIPNMLLFSLLLWNPFSS D
Sbjct: 131 RKRLVSDVHPLIPIMIPNMLLFSLLLWNPFSSSD 164
BLAST of ClCG01G023240 vs. NCBI nr
Match:
KAA0052667.1 (uncharacterized protein E6C27_scaffold120G002770 [Cucumis melo var. makuwa] >TYK13158.1 uncharacterized protein E5676_scaffold255G007700 [Cucumis melo var. makuwa])
HSP 1 Score: 306.6 bits (784), Expect = 1.2e-79
Identity = 142/154 (92.21%), Postives = 146/154 (94.81%), Query Frame = 0
Query: 1 MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
MEE PW QKLQALTHILLCP TAPPLASQ+FIATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 1 MEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
Query: 61 HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
HLQWGFSLFLK+LSRFGLPKTSWRSKCPYQLPPPLILAKGV AQWDDEQR NY RMRL+
Sbjct: 61 HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 120
Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
RKRLGSDVHPLIPIMIPNMLLF+LLLWNPFSS D
Sbjct: 121 RKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSSTD 154
BLAST of ClCG01G023240 vs. NCBI nr
Match:
XP_008439813.1 (PREDICTED: uncharacterized protein LOC103484499 [Cucumis melo])
HSP 1 Score: 306.6 bits (784), Expect = 1.2e-79
Identity = 142/154 (92.21%), Postives = 146/154 (94.81%), Query Frame = 0
Query: 1 MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
MEE PW QKLQALTHILLCP TAPPLASQ+FIATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 12 MEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 71
Query: 61 HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
HLQWGFSLFLK+LSRFGLPKTSWRSKCPYQLPPPLILAKGV AQWDDEQR NY RMRL+
Sbjct: 72 HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 131
Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
RKRLGSDVHPLIPIMIPNMLLF+LLLWNPFSS D
Sbjct: 132 RKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSSTD 165
BLAST of ClCG01G023240 vs. NCBI nr
Match:
KAG6594585.1 (hypothetical protein SDJN03_11138, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026555.1 hypothetical protein SDJN02_10557, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 298.9 bits (764), Expect = 2.5e-77
Identity = 138/154 (89.61%), Postives = 143/154 (92.86%), Query Frame = 0
Query: 1 MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
MEE+PWPQKLQ LTHILLCPTTAPPLASQYF+ATKIPCYLNWDYPPLLCPK SIFPFLSL
Sbjct: 1 MEESPWPQKLQVLTHILLCPTTAPPLASQYFVATKIPCYLNWDYPPLLCPKPSIFPFLSL 60
Query: 61 HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
HLQWGFSLFLKRLSRF LPKTSWRSKCP+Q PPPLILAKGV AQW DEQR YVRMRL+
Sbjct: 61 HLQWGFSLFLKRLSRFALPKTSWRSKCPFQHPPPLILAKGVDPAQWGDEQRRTYVRMRLR 120
Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
RKRLGSDVHPLIPI+IPNMLLFSLLLWNP SS D
Sbjct: 121 RKRLGSDVHPLIPIIIPNMLLFSLLLWNPLSSTD 154
BLAST of ClCG01G023240 vs. ExPASy TrEMBL
Match:
A0A0A0KK88 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518100 PE=4 SV=1)
HSP 1 Score: 313.5 bits (802), Expect = 4.8e-82
Identity = 145/154 (94.16%), Postives = 149/154 (96.75%), Query Frame = 0
Query: 1 MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
MEEAPWPQKLQALTHILLCPTTAPPLASQ+FIATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 12 MEEAPWPQKLQALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 71
Query: 61 HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
HLQWGFSLFLK+LSRFGLPKTSWRSKCPYQLPPPLILAKGV AQWDDEQR NY RMRL+
Sbjct: 72 HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 131
Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
RKRLGSDVHPLIPIMIPNMLLF+LLLWNPFSS D
Sbjct: 132 RKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSSTD 165
BLAST of ClCG01G023240 vs. ExPASy TrEMBL
Match:
A0A5A7UDV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007700 PE=4 SV=1)
HSP 1 Score: 306.6 bits (784), Expect = 5.8e-80
Identity = 142/154 (92.21%), Postives = 146/154 (94.81%), Query Frame = 0
Query: 1 MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
MEE PW QKLQALTHILLCP TAPPLASQ+FIATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 1 MEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
Query: 61 HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
HLQWGFSLFLK+LSRFGLPKTSWRSKCPYQLPPPLILAKGV AQWDDEQR NY RMRL+
Sbjct: 61 HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 120
Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
RKRLGSDVHPLIPIMIPNMLLF+LLLWNPFSS D
Sbjct: 121 RKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSSTD 154
BLAST of ClCG01G023240 vs. ExPASy TrEMBL
Match:
A0A1S3B097 (uncharacterized protein LOC103484499 OS=Cucumis melo OX=3656 GN=LOC103484499 PE=4 SV=1)
HSP 1 Score: 306.6 bits (784), Expect = 5.8e-80
Identity = 142/154 (92.21%), Postives = 146/154 (94.81%), Query Frame = 0
Query: 1 MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
MEE PW QKLQALTHILLCP TAPPLASQ+FIATKIPCYLNWDYPPLLCPKSSIFPFLSL
Sbjct: 12 MEETPWSQKLQALTHILLCPDTAPPLASQFFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 71
Query: 61 HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
HLQWGFSLFLK+LSRFGLPKTSWRSKCPYQLPPPLILAKGV AQWDDEQR NY RMRL+
Sbjct: 72 HLQWGFSLFLKKLSRFGLPKTSWRSKCPYQLPPPLILAKGVHPAQWDDEQRINYARMRLR 131
Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
RKRLGSDVHPLIPIMIPNMLLF+LLLWNPFSS D
Sbjct: 132 RKRLGSDVHPLIPIMIPNMLLFTLLLWNPFSSTD 165
BLAST of ClCG01G023240 vs. ExPASy TrEMBL
Match:
A0A6J1EGM1 (uncharacterized protein LOC111433914 OS=Cucurbita moschata OX=3662 GN=LOC111433914 PE=4 SV=1)
HSP 1 Score: 296.2 bits (757), Expect = 7.9e-77
Identity = 137/154 (88.96%), Postives = 142/154 (92.21%), Query Frame = 0
Query: 1 MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
MEE+PWPQKLQ LTHILLCPTTAPPLASQYF+ATKIPCYLNWDYPPLLCPK SIFPF SL
Sbjct: 1 MEESPWPQKLQVLTHILLCPTTAPPLASQYFVATKIPCYLNWDYPPLLCPKPSIFPFPSL 60
Query: 61 HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
HLQWGFSLFLKRLSRF LPKTSWRSKCP+Q PPPLILAKGV AQW DEQR YVRMRL+
Sbjct: 61 HLQWGFSLFLKRLSRFALPKTSWRSKCPFQHPPPLILAKGVDPAQWGDEQRRTYVRMRLR 120
Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSSDD 155
RKRLGSDVHPLIPI+IPNMLLFSLLLWNP SS D
Sbjct: 121 RKRLGSDVHPLIPIIIPNMLLFSLLLWNPLSSTD 154
BLAST of ClCG01G023240 vs. ExPASy TrEMBL
Match:
A0A6J1IR68 (uncharacterized protein LOC111478635 OS=Cucurbita maxima OX=3661 GN=LOC111478635 PE=4 SV=1)
HSP 1 Score: 287.0 bits (733), Expect = 4.8e-74
Identity = 133/152 (87.50%), Postives = 140/152 (92.11%), Query Frame = 0
Query: 1 MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
ME+APW QKL+ALTHILLCPTTAPPLASQ+FIATKIPCYLNWDYPPLLC K SIFPF SL
Sbjct: 9 MEDAPWTQKLEALTHILLCPTTAPPLASQFFIATKIPCYLNWDYPPLLCSKPSIFPFPSL 68
Query: 61 HLQWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRLK 120
HLQWGFSLFLKRLSR GLP TSWRSKCPYQLPPPL+LA+GV AQWDDEQR NYVRMRL+
Sbjct: 69 HLQWGFSLFLKRLSRLGLPMTSWRSKCPYQLPPPLLLARGVDGAQWDDEQRRNYVRMRLR 128
Query: 121 RKRLGSDVHPLIPIMIPNMLLFSLLLWNPFSS 153
RKRLGSDV+PLIPIMIPNMLLF LLLW P SS
Sbjct: 129 RKRLGSDVNPLIPIMIPNMLLFCLLLWKPLSS 160
BLAST of ClCG01G023240 vs. TAIR 10
Match:
AT2G33855.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 166.8 bits (421), Expect = 1.4e-41
Identity = 80/150 (53.33%), Postives = 102/150 (68.00%), Query Frame = 0
Query: 1 MEEAPWPQKLQALTHILLCPTTAPPLASQYFIATKIPCYLNWDYPPLLCPKSSIFPFLSL 60
MEE W Q++QA+THIL PTT P L SQ+FI IP Y++WDYPP+ P
Sbjct: 1 MEETTWGQRIQAVTHILTNPTTKPSLYSQFFIGAIIPNYVSWDYPPVYSP---------T 60
Query: 61 HL-QWGFSLFLKRLSRFGLPKTSWRSKCPYQLPPPLILAKGVPAAQWDDEQRTNYVRMRL 120
HL QW S F KR+SRFGLP TSWRS PY PP ++A GV +W E+R Y R RL
Sbjct: 61 HLRQWWVSQFFKRVSRFGLPDTSWRSNSPYYQPPAAVMAVGVEEGKWGKEERREYARKRL 120
Query: 121 KRKRLGSDVHPLIPIMIPNMLLFSLLLWNP 150
+RKRL ++V+P IP+++PN+LLF+LLLW+P
Sbjct: 121 RRKRLVNEVNPYIPLLVPNLLLFTLLLWDP 141
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_004134687.2 | 9.9e-82 | 94.16 | uncharacterized protein LOC101221431 [Cucumis sativus] | [more] |
XP_038883097.1 | 1.1e-80 | 94.16 | uncharacterized protein LOC120074151 [Benincasa hispida] | [more] |
KAA0052667.1 | 1.2e-79 | 92.21 | uncharacterized protein E6C27_scaffold120G002770 [Cucumis melo var. makuwa] >TYK... | [more] |
XP_008439813.1 | 1.2e-79 | 92.21 | PREDICTED: uncharacterized protein LOC103484499 [Cucumis melo] | [more] |
KAG6594585.1 | 2.5e-77 | 89.61 | hypothetical protein SDJN03_11138, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KK88 | 4.8e-82 | 94.16 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518100 PE=4 SV=1 | [more] |
A0A5A7UDV0 | 5.8e-80 | 92.21 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3B097 | 5.8e-80 | 92.21 | uncharacterized protein LOC103484499 OS=Cucumis melo OX=3656 GN=LOC103484499 PE=... | [more] |
A0A6J1EGM1 | 7.9e-77 | 88.96 | uncharacterized protein LOC111433914 OS=Cucurbita moschata OX=3662 GN=LOC1114339... | [more] |
A0A6J1IR68 | 4.8e-74 | 87.50 | uncharacterized protein LOC111478635 OS=Cucurbita maxima OX=3661 GN=LOC111478635... | [more] |
Match Name | E-value | Identity | Description | |
AT2G33855.1 | 1.4e-41 | 53.33 | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... | [more] |