CaUC11G213400 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC11G213400
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Descriptionstress-induced protein KIN2-like
LocationCiama_Chr11: 26554907 .. 26557162 (+)
RNA-Seq ExpressionCaUC11G213400
SyntenyCaUC11G213400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTGGTACAAATAACATATAGGGCAAACATTATGAATAACTAAATATTATAATATAAAAAAACAGCTAAAACTTTTAAAGAAGTCGCAATTTACTTTCTAAAATTTATTTGATAACGATTTAGTTATCATAATATTTTTTATTTTTTTAAAACATTTAGTGAGACTTTAATACATAGCAATGAGTGTCTGTATTGACTATCATGTTATAATGGAATTTAAGTATATTTTTTAGATGGTAGGAATTAATTGTTATAGAATTTAAAGTATGAAAACTACATTATTACATACTAAAGTTTAAGTACTAAATTATTACCAATTATAAAGTACATATATTAAATTATTACATGGGACCAAACATGTTTTTTAATTTAGGGAGCAAACATGTTTTTAACCTAAATACTATATACCGATATTCATTATTTTTTTTTATGAGAATACAACATTACAATTGTAGGGAGAAAGTTCAAACTTTTTACCTATGCCTAACTTAATTGAGTTATGTTTAGATATATATCATGGACAATATTGCATATTTTAAAACTATATTTTTAAAATCACAAGATAAATAATTAACATGAACTTACTTCAATGATTAATCACATCAACACAAATGCAAGTCAACCCCACAAGCTCTCAGATGTTTCAGTTCACTAAGTTTGAAAAGTCCAAAGAGCGCAGAACAGACGACATACTATTTAGTATGTGTGATAAATATATATATATATTTTCTAAAAAAACTAATTTTTTAGGCTTTATTTGATAACCATTTAGTTTTTGGTTTTTGTTTTTAAAAATTAAAGATGGTATTTTTATGAATTACTAATAAGAGGTCGGGTGAAAGAAGTGTACTTTACTAGCTATATTAGTTTAAAATGGTGTTTAATAACTTTAACCATTAGGGCAAATATTCAATTTAATTATATCATAAATTATGGAGTTGTATTAATTAAACCTCAAATTAATAATTGTTTAAACTTTAAATTTTCATAAGTGATTCAATTTAGACCTCATTTAATTGTAATTAAAGTCACGTCAGAATTACTTAAATAAAATTATTTTTTTCTAAAAATTCCACCAAAGAAGCAAGAAAAATTATCATGTAATTTTTTTCTAAACAAGTAAAAACAAAATAAAGGGAGATGAGTGGATGAAATATCGTTACTATCTATTTGATTATTGCATTTTTCTTTTAGTTTATATTACTTTTTACATTTAACTTAAGAAACTCCATTTATACACATGAAAAATTATGCAGGAATGGTTTTAAAAATAAAAAATTATAATAGAATGTCTAAATCGATTCACTTATAAAAATTTACTATTCAAATATGTACAATTAGTAGTTTAAAGTTTAATTGATAGAAATTTAGACGTAATAAATTGATATTTTCATGGTTATTATTAATCATATGAGACTTTTTTTTTCATTAGTAAGAAATTCTAAATTTAGAATAAATTGTCAATTACTTCAAATGAATCATTCTTGCCGTCCCCCTTGTCAATGGGCCTCGTTATAAAAGTTCCATTGACTTGATGACACATGGCATAGTGTTTCCTATGATTGCATTACACGTGTCAAGTGGGGATTTCATTCAAACTACTATATTAACACTAAACTTGAGGTTCTAAATCAAACAAACTTGAGAATCATATTCACATATCATTTTCAATTTTATATCTCTTTTTCTTTTCTAAATTTCTCTTTTTTAAAAAAAATGGATAACTCTCAAAAGATGAGCTATCACTCTGGAGAAGCCAAGGGCCAAGCTCAGGTTTTTCATCTATTGTCATTGTTTTTGTTATCATACATCACTTTAAAAGTATATGAAATTTTATAATTTATTACCATCACTGAAAAATTATCCAAATTTATTTTTTCGCATTTGATATTCAAAGAGTGATAGGTAACATGTCGGTTTGTGTTCTTATATAGGAAAAGGTGAGCAATATGATGGATAAGGCAGGCGATGCAGCTCAATCGGCCAAAGAGTCAATTCAAGAGGCAGGACAACAAATGAAAGCTAAGGCTCAAGGAGCTGCTGATGCTGTCAAAGATGCTGTCAACAAATGAAGCCACCCATCATCTTTATGTTTAATTAATTTTGCTTAAACACTCTCTTGGGAGAGCTATTTTCTTTATTAGCATGGGGTTTGTTTCCAACCCTTTCAAATCTCTTTATGGGAGAAAAGAGGTTTTTATTTTTCTTCTTTATATTATATATATTATGAGTTTTTCTTTTGGCTTTTGGG

mRNA sequence

ATGGAATTGATGAGCTATCACTCTGGAGAAGCCAAGGGCCAAGCTCAGGAAAAGGTGAGCAATATGATGGATAAGGCAGGCGATGCAGCTCAATCGGCCAAAGAGTCAATTCAAGAGGCAGGACAACAAATGAAAGCTAAGGCTCAAGGAGCTGCTGATGCTGTCAAAGATGCTGTCAACAAATGAAGCCACCCATCATCTTTATGTTTAATTAATTTTGCTTAAACACTCTCTTGGGAGAGCTATTTTCTTTATTAGCATGGGGTTTGTTTCCAACCCTTTCAAATCTCTTTATGGGAGAAAAGAGGTTTTTATTTTTCTTCTTTATATTATATATATTATGAGTTTTTCTTTTGGCTTTTGGG

Coding sequence (CDS)

ATGGAATTGATGAGCTATCACTCTGGAGAAGCCAAGGGCCAAGCTCAGGAAAAGGTGAGCAATATGATGGATAAGGCAGGCGATGCAGCTCAATCGGCCAAAGAGTCAATTCAAGAGGCAGGACAACAAATGAAAGCTAAGGCTCAAGGAGCTGCTGATGCTGTCAAAGATGCTGTCAACAAATGA

Protein sequence

MELMSYHSGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQGAADAVKDAVNK
Homology
BLAST of CaUC11G213400 vs. NCBI nr
Match: XP_038891124.1 (late embryogenesis abundant protein 7-like [Benincasa hispida])

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 0

Query: 4  MSYHSGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQGAADAVKDAVNK 62
          MSYH+GEAKGQAQEK+SNMMDKAGDAAQSAKES+QE GQQMKAK QGAADAVKDA+NK
Sbjct: 7  MSYHAGEAKGQAQEKLSNMMDKAGDAAQSAKESVQEVGQQMKAKVQGAADAVKDAINK 64

BLAST of CaUC11G213400 vs. NCBI nr
Match: XP_038891080.1 (late embryogenesis abundant protein 2-like [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0

Query: 4  MSYHSGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQGAADAVKDAVNK 62
          MSYH+GEAKGQ QEKVSNMMDKA DAAQSAKESIQEAGQQ+KAKAQGA DAVKDA+NK
Sbjct: 7  MSYHAGEAKGQTQEKVSNMMDKASDAAQSAKESIQEAGQQVKAKAQGATDAVKDAINK 64

BLAST of CaUC11G213400 vs. NCBI nr
Match: XP_038891163.1 (stress-induced protein KIN2-like [Benincasa hispida])

HSP 1 Score: 95.1 bits (235), Expect = 2.2e-16
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 0

Query: 4  MSYHSGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQGAADAVKDAVNK 62
          MSYH+GEAKGQAQEKVSNMMDKA DAAQS KES+QEAGQQ+KAKAQGAA+AVKDAVNK
Sbjct: 7  MSYHAGEAKGQAQEKVSNMMDKANDAAQSTKESMQEAGQQIKAKAQGAAEAVKDAVNK 64

BLAST of CaUC11G213400 vs. NCBI nr
Match: XP_004141485.1 (late embryogenesis abundant protein 2 [Cucumis sativus] >KGN52546.1 hypothetical protein Csa_008504 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 4.9e-16
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 4  MSYHSGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQGAADAVKDAVNK 62
          MSYH+GEAKGQ QEK+SNMMDKA DAAQSAKES+QE GQQM AKAQGAADAVKDAVNK
Sbjct: 8  MSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVKDAVNK 65

BLAST of CaUC11G213400 vs. NCBI nr
Match: KAF3443960.1 (hypothetical protein FNV43_RR13650 [Rhamnella rubrinervis])

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 4  MSYHSGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQGAADAVKDA 59
          MSYH+GEAKG+AQEK  NMMDKAGDAAQSAKES+QEAGQQMKAKAQGAADAVKDA
Sbjct: 8  MSYHAGEAKGRAQEKAGNMMDKAGDAAQSAKESVQEAGQQMKAKAQGAADAVKDA 62

BLAST of CaUC11G213400 vs. ExPASy TrEMBL
Match: A0A0A0KXN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.4e-16
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 4  MSYHSGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQGAADAVKDAVNK 62
          MSYH+GEAKGQ QEK+SNMMDKA DAAQSAKES+QE GQQM AKAQGAADAVKDAVNK
Sbjct: 8  MSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVKDAVNK 65

BLAST of CaUC11G213400 vs. ExPASy TrEMBL
Match: A0A0A0KRE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165860 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.0e-16
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0

Query: 2  ELMSYHSGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQGAADAVKDA 59
          E MSYH GEAKGQAQEK SN+MDKAGD AQSAKES+QEAGQQMKAKAQGAADAVKDA
Sbjct: 6  EKMSYHIGEAKGQAQEKASNLMDKAGDTAQSAKESMQEAGQQMKAKAQGAADAVKDA 62

BLAST of CaUC11G213400 vs. ExPASy TrEMBL
Match: A0A5D3BPC0 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002090 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0

Query: 4  MSYHSGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQGAADAVKDAVNK 62
          MSYH+GEAKGQ QEKVSNMMDKA +AAQS KES+QEAGQQM AKAQGA DAVKDAVNK
Sbjct: 7  MSYHAGEAKGQTQEKVSNMMDKASNAAQSTKESVQEAGQQMMAKAQGATDAVKDAVNK 64

BLAST of CaUC11G213400 vs. ExPASy TrEMBL
Match: A0A6J1E4Q8 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 4  MSYHSGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQGAADAVKDA 59
          MSYH+GEAKGQAQEK SNMMDKA DAAQSAKES+QEAGQQ+KAKAQGAADAVKDA
Sbjct: 8  MSYHAGEAKGQAQEKASNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAVKDA 62

BLAST of CaUC11G213400 vs. ExPASy TrEMBL
Match: A0A6J1BXE6 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111006564 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0

Query: 4  MSYHSGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQGAADAVKDAVNK 62
          M+YH+GEAKGQAQEK SN+MDK  DAAQSAKES+QEAGQQMKAKAQGA DAVKDA NK
Sbjct: 8  MAYHAGEAKGQAQEKASNLMDKVDDAAQSAKESVQEAGQQMKAKAQGAVDAVKDAANK 65

BLAST of CaUC11G213400 vs. TAIR 10
Match: AT5G53820.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 70.1 bits (170), Expect = 7.0e-13
Identity = 36/54 (66.67%), Postives = 48/54 (88.89%), Query Frame = 0

Query: 4  MSYHSGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQGAADAVKD 58
          MS+++G+AKGQ QEK SN++DKA +AAQSAKESIQE GQQ+K KAQGA++ +K+
Sbjct: 8  MSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIKE 61

BLAST of CaUC11G213400 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 67.0 bits (162), Expect = 5.9e-12
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 0

Query: 4  MSYHSGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQGAADAVKDA 59
          +S+ +G+AKGQ QEK S MMDKA +AAQSAKES++E GQQ+K KAQGA ++VK+A
Sbjct: 8  ISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVKNA 62

BLAST of CaUC11G213400 vs. TAIR 10
Match: AT3G02480.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 64.3 bits (155), Expect = 3.9e-11
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 0

Query: 5  SYHSGEAKGQAQEKVSNMMDKAGDAAQSAKESIQEAGQQMKAKAQGAADAVKD 58
          SY +G+A GQ +EK   MMDKA DAA SA++S+Q+ GQQMK KAQGAAD VKD
Sbjct: 8  SYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKD 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038891124.12.6e-1789.66late embryogenesis abundant protein 7-like [Benincasa hispida][more]
XP_038891080.11.3e-1689.66late embryogenesis abundant protein 2-like [Benincasa hispida][more]
XP_038891163.12.2e-1689.66stress-induced protein KIN2-like [Benincasa hispida][more]
XP_004141485.14.9e-1687.93late embryogenesis abundant protein 2 [Cucumis sativus] >KGN52546.1 hypothetical... [more]
KAF3443960.11.4e-1590.91hypothetical protein FNV43_RR13650 [Rhamnella rubrinervis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXN22.4e-1687.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643250 PE=4 SV=1[more]
A0A0A0KRE19.0e-1689.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G165860 PE=4 SV=1[more]
A0A5D3BPC01.2e-1586.21Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A6J1E4Q81.2e-1590.91stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 ... [more]
A0A6J1BXE61.2e-1584.48stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111006564 ... [more]
Match NameE-valueIdentityDescription
AT5G53820.17.0e-1366.67Late embryogenesis abundant protein (LEA) family protein [more]
AT5G38760.15.9e-1265.45Late embryogenesis abundant protein (LEA) family protein [more]
AT3G02480.13.9e-1166.04Late embryogenesis abundant protein (LEA) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.10.140.1430coord: 7..61
e-value: 7.3E-6
score: 28.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..61
NoneNo IPR availablePANTHERPTHR34191:SF4LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEINcoord: 4..61
IPR039624Stress-induced protein KIN1/KIN2PANTHERPTHR34191LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEINcoord: 4..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC11G213400.1CaUC11G213400.1mRNA