CaUC03G054820.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview


Name	CaUC03G054820.1
Type	mRNA
Organism	Citrullus amarus (Watermelon (USVL246-FR2) v1)
Description	Unknown protein
Location	Ciama_Chr03: 5345064 .. 5345405 (-)
Sequence length	342
RNA-Seq Expression	CaUC03G054820.1
Synteny	CaUC03G054820.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTTTTAGTGACAATGAGGAAAAATGGTGGTTATTCAAGGATGGAGAAGGAAGACCCAGATGAGAAAAAGCATAGACAAGCACAGTTTTTAATTTACAAGATAATGGAGCAGGCAAATAGTAGCAGTAGGAGAAGACCCTCATATCTCAGAATCAGAATAAGGAAGTTTAAGTTAAGGATTGGAAAGAGGTTGAAGAAGCTGAAGAAGACAATGTCAATGAGTTTGGCCACAGCAAGAATTGGGATTTGCAAGCAATTTGAACAACTTAGAACTTGTAAGAGCTTGTTTGGAGGAGCCAAGGTGGAAACTTTGGCCTTTCCTACTTTGGTTACTTGA

mRNA sequence

ATGAGTGTTTTAGTGACAATGAGGAAAAATGGTGGTTATTCAAGGATGGAGAAGGAAGACCCAGATGAGAAAAAGCATAGACAAGCACAGTTTTTAATTTACAAGATAATGGAGCAGGCAAATAGTAGCAGTAGGAGAAGACCCTCATATCTCAGAATCAGAATAAGGAAGTTTAAGTTAAGGATTGGAAAGAGGTTGAAGAAGCTGAAGAAGACAATGTCAATGAGTTTGGCCACAGCAAGAATTGGGATTTGCAAGCAATTTGAACAACTTAGAACTTGTAAGAGCTTGTTTGGAGGAGCCAAGGTGGAAACTTTGGCCTTTCCTACTTTGGTTACTTGA

Coding sequence (CDS)

ATGAGTGTTTTAGTGACAATGAGGAAAAATGGTGGTTATTCAAGGATGGAGAAGGAAGACCCAGATGAGAAAAAGCATAGACAAGCACAGTTTTTAATTTACAAGATAATGGAGCAGGCAAATAGTAGCAGTAGGAGAAGACCCTCATATCTCAGAATCAGAATAAGGAAGTTTAAGTTAAGGATTGGAAAGAGGTTGAAGAAGCTGAAGAAGACAATGTCAATGAGTTTGGCCACAGCAAGAATTGGGATTTGCAAGCAATTTGAACAACTTAGAACTTGTAAGAGCTTGTTTGGAGGAGCCAAGGTGGAAACTTTGGCCTTTCCTACTTTGGTTACTTGA

Protein sequence

MSVLVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKLRIGKRLKKLKKTMSMSLATARIGICKQFEQLRTCKSLFGGAKVETLAFPTLVT

Homology

[Close]

BLAST of CaUC03G054820.1 vs. NCBI nr
Match: KAG6584084.1 (hypothetical protein SDJN03_20016, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.1 bits (440), Expect = 6.9e-40
Identity = 95/113 (84.07%), Postives = 101/113 (89.38%), Query Frame = 0


Query: 1   MSVLVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKL 60
           MS LVT R+N GYSRMEKEDP+EKKHRQAQFLIYKIMEQANS SRRR S LRIRIRKFKL
Sbjct: 1   MSGLVTRRQN-GYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKL 60

Query: 61  RIGKRLKKLKKTMSMSLATARIGICKQFEQLRTCKSLFGGAKVETLAFPTLVT 114
           RIG+RLKKLKKTMSM + TARIGICKQF QLRTCKSLFG AK E LAFP+LV+
Sbjct: 61  RIGRRLKKLKKTMSMGICTARIGICKQFGQLRTCKSLFGRAKEEALAFPSLVS 112

[Close]

BLAST of CaUC03G054820.1 vs. NCBI nr
Match: KGN64527.1 (hypothetical protein Csa_013452 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 6.9e-40
Identity = 88/110 (80.00%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MSVLVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKL 60
           MSVL+T+R+NGGYS+MEKEDPDEKKHRQAQFLIYKIMEQA++ S+RRPS LRIRIRKFKL
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RIGKRLKKLKKTMSMSLATARIGICKQFEQLRTCKSLFGGAKVETLAFPT 111
           R+G+R KK+KKTM+MS +TARIGIC QF QLR+CKSLFG  KVETL FPT
Sbjct: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPT 110

[Close]

BLAST of CaUC03G054820.1 vs. NCBI nr
Match: KAG7019685.1 (hypothetical protein SDJN02_18648, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.4 bits (433), Expect = 4.4e-39
Identity = 94/113 (83.19%), Postives = 100/113 (88.50%), Query Frame = 0


Query: 1   MSVLVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKL 60
           MS LVT R+N GYSRMEKEDP+EKKHRQAQFLIYKIMEQANS SRRR S LRIRIRKFKL
Sbjct: 1   MSGLVTRRQN-GYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGSRRRSSCLRIRIRKFKL 60

Query: 61  RIGKRLKKLKKTMSMSLATARIGICKQFEQLRTCKSLFGGAKVETLAFPTLVT 114
           RIG+RLKKLKKTMSM + TAR GICKQF QLRTCKSLFG AK E LAFP+LV+
Sbjct: 61  RIGRRLKKLKKTMSMGICTARNGICKQFGQLRTCKSLFGRAKEEALAFPSLVS 112

[Close]

BLAST of CaUC03G054820.1 vs. NCBI nr
Match: XP_022140046.1 (uncharacterized protein LOC111010796 [Momordica charantia])

HSP 1 Score: 171.4 bits (433), Expect = 4.4e-39
Identity = 93/114 (81.58%), Postives = 104/114 (91.23%), Query Frame = 0


Query: 1   MSVLVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKL 60
           MSV++T RK  GYSRMEKEDP+EKKHR+AQFLIYKIMEQANS SRRRP+ LRIRIRKFKL
Sbjct: 1   MSVILT-RKQSGYSRMEKEDPEEKKHREAQFLIYKIMEQANSGSRRRPTCLRIRIRKFKL 60

Query: 61  RIGKRLKKLKKTMSMSLATARIGICKQFEQLRTCKSLFG-GAKVETLAFPTLVT 114
           RIG+RLKKL+K+MS SL+TARIGICKQ  QLRTCKSLFG G KVETLAFP+LV+
Sbjct: 61  RIGRRLKKLRKSMSASLSTARIGICKQIGQLRTCKSLFGRGRKVETLAFPSLVS 113

[Close]

BLAST of CaUC03G054820.1 vs. NCBI nr
Match: XP_023001322.1 (uncharacterized protein LOC111495486 [Cucurbita maxima])

HSP 1 Score: 167.5 bits (423), Expect = 6.4e-38
Identity = 92/113 (81.42%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 1   MSVLVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKL 60
           MS LVT R+N GYSRMEKEDP+EKKHRQAQFLIYKIMEQANS +RRR S LRIRIRKFKL
Sbjct: 1   MSGLVTRRQN-GYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKL 60

Query: 61  RIGKRLKKLKKTMSMSLATARIGICKQFEQLRTCKSLFGGAKVETLAFPTLVT 114
           RIG+RLKKLKKTMSM   TAR GICKQF QLRTCKSLFG  K E LAFP+LV+
Sbjct: 61  RIGRRLKKLKKTMSMGFCTARNGICKQFGQLRTCKSLFGRPKEEALAFPSLVS 112

[Close]

BLAST of CaUC03G054820.1 vs. ExPASy TrEMBL
Match: A0A0A0LUT4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063510 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.3e-40
Identity = 88/110 (80.00%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MSVLVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKL 60
           MSVL+T+R+NGGYS+MEKEDPDEKKHRQAQFLIYKIMEQA++ S+RRPS LRIRIRKFKL
Sbjct: 1   MSVLMTVRRNGGYSKMEKEDPDEKKHRQAQFLIYKIMEQASNGSKRRPSCLRIRIRKFKL 60

Query: 61  RIGKRLKKLKKTMSMSLATARIGICKQFEQLRTCKSLFGGAKVETLAFPT 111
           R+G+R KK+KKTM+MS +TARIGIC QF QLR+CKSLFG  KVETL FPT
Sbjct: 61  RMGRRWKKMKKTMAMSFSTARIGICNQFGQLRSCKSLFGKTKVETLNFPT 110

[Close]

BLAST of CaUC03G054820.1 vs. ExPASy TrEMBL
Match: A0A6J1CEK3 (uncharacterized protein LOC111010796 OS=Momordica charantia OX=3673 GN=LOC111010796 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.2e-39
Identity = 93/114 (81.58%), Postives = 104/114 (91.23%), Query Frame = 0


Query: 1   MSVLVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKL 60
           MSV++T RK  GYSRMEKEDP+EKKHR+AQFLIYKIMEQANS SRRRP+ LRIRIRKFKL
Sbjct: 1   MSVILT-RKQSGYSRMEKEDPEEKKHREAQFLIYKIMEQANSGSRRRPTCLRIRIRKFKL 60

Query: 61  RIGKRLKKLKKTMSMSLATARIGICKQFEQLRTCKSLFG-GAKVETLAFPTLVT 114
           RIG+RLKKL+K+MS SL+TARIGICKQ  QLRTCKSLFG G KVETLAFP+LV+
Sbjct: 61  RIGRRLKKLRKSMSASLSTARIGICKQIGQLRTCKSLFGRGRKVETLAFPSLVS 113

[Close]

BLAST of CaUC03G054820.1 vs. ExPASy TrEMBL
Match: A0A6J1KG77 (uncharacterized protein LOC111495486 OS=Cucurbita maxima OX=3661 GN=LOC111495486 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.1e-38
Identity = 92/113 (81.42%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 1   MSVLVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKL 60
           MS LVT R+N GYSRMEKEDP+EKKHRQAQFLIYKIMEQANS +RRR S LRIRIRKFKL
Sbjct: 1   MSGLVTRRQN-GYSRMEKEDPEEKKHRQAQFLIYKIMEQANSGTRRRSSCLRIRIRKFKL 60

Query: 61  RIGKRLKKLKKTMSMSLATARIGICKQFEQLRTCKSLFGGAKVETLAFPTLVT 114
           RIG+RLKKLKKTMSM   TAR GICKQF QLRTCKSLFG  K E LAFP+LV+
Sbjct: 61  RIGRRLKKLKKTMSMGFCTARNGICKQFGQLRTCKSLFGRPKEEALAFPSLVS 112

[Close]

BLAST of CaUC03G054820.1 vs. ExPASy TrEMBL
Match: W9RFE3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006294 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.7e-24
Identity = 63/116 (54.31%), Postives = 85/116 (73.28%), Query Frame = 0


Query: 5   VTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKLRIGK 64
           + +RK   YS+++KEDP+E+  R+AQFLIYK+MEQA+S SRRRPSYLRIRIRK K++IGK
Sbjct: 3   LVLRKPNAYSKIDKEDPEERNRRRAQFLIYKVMEQADSMSRRRPSYLRIRIRKLKVKIGK 62

Query: 65  RLKKLKKTMSMSLATARIGICKQF-EQLRTCKSLFGGAK-------VETLAFPTLV 113
           RL KL+K+M +S++ A++ +CKQ   Q +TC+ LFGG         V TL  P  V
Sbjct: 63  RLTKLRKSMLLSISAAKVSVCKQVCSQFKTCRRLFGGGDNHSSANLVNTLPSPLFV 118

[Close]

BLAST of CaUC03G054820.1 vs. ExPASy TrEMBL
Match: A0A7J6HWJ0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_027202 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.6e-21
Identity = 62/107 (57.94%), Postives = 79/107 (73.83%), Query Frame = 0


Query: 4   LVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKFKLRIG 63
           +V  + + GYS+MEKEDP+EK HR+AQFLIYK+MEQA   SR+R SYLR+RI+K K++IG
Sbjct: 3   IVLKKSSNGYSKMEKEDPEEKNHRRAQFLIYKVMEQA--ESRKRTSYLRLRIKKLKVKIG 62

Query: 64  KRLKKLKKTMSMSLATARIGICKQFE-QLRTCKSLFGGAKVETLAFP 110
           KRL KL+K    SL TARI + +Q   QL+TCK LFGG   +T   P
Sbjct: 63  KRLTKLRK----SLNTARINVYRQVSTQLKTCKRLFGGTSAQTTLVP 103

[Close]

BLAST of CaUC03G054820.1 vs. TAIR 10
Match: AT1G11655.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 7.9e-10
Identity = 38/101 (37.62%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 13  YSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRP--SYLRIRIRKFKLRIGKRLKKLK 72
           YS+M+KEDP+E   R+A+FLIYK +++A+  SRR P  S++R+++   K++IGKRL KL+
Sbjct: 10  YSKMDKEDPEEVLSRRAKFLIYKTLQEADLISRRDPHSSFIRLKLYLLKVKIGKRLAKLR 69

Query: 73  KTMSMSLATARIGICKQFEQ--LRTCKSLFGGAKVETLAFP 110
           +++   ++  R G  ++     +R  K +F G     L  P
Sbjct: 70  RSV---VSAVRFGGIRKHSHNGVRALKKMFQGGATTGLPRP 107

[Close]

BLAST of CaUC03G054820.1 vs. TAIR 10
Match: AT4G04745.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 13  YSRMEKEDPDEKKHRQAQFLIYKIMEQANSSS-----RRRPS--YLRIRIRKFKLRIGKR 72
           Y++MEKEDP E  HR+AQFLI K++E+A+S +     RRR S   + IR+   ++RIGK+
Sbjct: 37  YTKMEKEDPQELIHRRAQFLIQKVLERADSKTRQHQQRRRSSGPLIMIRVVGIRMRIGKK 96

[Close]

BLAST of CaUC03G054820.1 vs. TAIR 10
Match: AT4G21902.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04745.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05
Identity = 28/79 (35.44%), Postives = 50/79 (63.29%), Query Frame = 0


Query: 4  LVTMRKNGGYSRMEKEDPDEKKHRQAQFLIYKIMEQANSSSRRRPSYLRIRIRKF----- 63
          +  M+    Y+++EKED +E  HR+AQFLI+KI+++A+  + R+       I+ F     
Sbjct: 1  MAMMKNPNQYTKIEKEDLNEIIHRRAQFLIHKILQRADIETLRQQQKRNTTIKLFSFRVV 60

Query: 64 --KLRIGKRLKKLKKTMSM 76
            +++IGK+L+KL+K+  M
Sbjct: 61 GIRMKIGKKLRKLRKSCVM 79

The following BLAST results are available for this feature:

BLAST of CaUC03G054820.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584084.1	6.9e-40	84.07	hypothetical protein SDJN03_20016, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN64527.1	6.9e-40	80.00	hypothetical protein Csa_013452 [Cucumis sativus]	[more]
KAG7019685.1	4.4e-39	83.19	hypothetical protein SDJN02_18648, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022140046.1	4.4e-39	81.58	uncharacterized protein LOC111010796 [Momordica charantia]	[more]
XP_023001322.1	6.4e-38	81.42	uncharacterized protein LOC111495486 [Cucurbita maxima]	[more]

BLAST of CaUC03G054820.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CaUC03G054820.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUT4	3.3e-40	80.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063510 PE=4 SV=1	[more]
A0A6J1CEK3	2.2e-39	81.58	uncharacterized protein LOC111010796 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1KG77	3.1e-38	81.42	uncharacterized protein LOC111495486 OS=Cucurbita maxima OX=3661 GN=LOC111495486...	[more]
W9RFE3	9.7e-24	54.31	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006294 PE=4 SV=1	[more]
A0A7J6HWJ0	2.6e-21	57.94	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_027202 PE=4 SV=1	[more]

BLAST of CaUC03G054820.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11655.1	7.9e-10	37.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G04745.1	1.5e-08	50.75	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G21902.1	2.0e-05	35.44	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR35687	OS07G0516700 PROTEIN	coord: 5..103
None	No IPR available	PANTHER	PTHR35687:SF1	OS07G0516700 PROTEIN	coord: 5..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CaUC03G054820	CaUC03G054820	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC03G054820.1-exon	CaUC03G054820.1-exon-Ciama_Chr03:5345064..5345405	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CaUC03G054820.1-cds	CaUC03G054820.1-cds-Ciama_Chr03:5345064..5345405	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CaUC03G054820.1	CaUC03G054820.1-protein	polypeptide