CaUC09G165920 (gene) Watermelon (USVL246-FR2) v1

Overview
NameCaUC09G165920
Typegene
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCiama_Chr09: 8167932 .. 8168821 (+)
RNA-Seq ExpressionCaUC09G165920
SyntenyCaUC09G165920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGGTTCAAATCCTACCCCTCCCATATCTTCATTCAATCATTTACTTGGTGGACTTACTAAGATTAAGCATTACTCTCAAGTATTTTCTCTCTACAATAAAATGCGCCTAGCCGAACTCTTGCTTGATTGCTTGACACTGAATATATTGATTAATTGCCTTTGTAATGTGAATCGGGTTAGCGAAGGTCTTGCGGCCATGGCGGTGATTTTAAGGAGAGGTTATATTCCTAATATAGACATATTCGACCTTGATTAAGGGCTTGTGTATGAAACATAGGATTAGTGAAGCCACAGGGTTGTTTATGAGAATGAAAAAGTTAGGTTGTATGCCTAATGTGGTTACTCATACCTCTTTGATTCATGGATTTTCCTGAGGTGGAAATTGGAAGGAGGCTAAACATTCGTTAAATGAGATGATGGATCACGGTGTTCGATCAAATCTGGTTACAGTCAGTGTGTTGATTGATATGCTTTGCAAGGAAGGAAAGGTTATCAAGGCTCAGGAGTTCCTAAAGGCGGTGATTCAGACAAGCAATGTTTCAAATTCGCTTACTCATAAGTCAGAGGGGTTTTGTTTGGTTGGTGACTTGAATAGTGCGAGGGAACTCTTTGTTAGTATGCTAAGTAATGGATGTGAACCTGATGTGATTAGTTACAATGTAGCATCAATGGGTATTGTAAAACTTGGAAGGTGGAAGAAGCAATGAACCTTTACAATGAAATGCTTCTAGGGGAAAGAGGTCAGATGTGAAAACATATGGTGCCTTCTTAACTGGGCTTTTTCAGGCAGGCAAGGTTAGTGATGCAAAGAAGCTACTTGGTGTTATGAAAGCTTATGGTATTGCTGCAGATTCGTGTATATATCTTATTTTCTGGGTTGTGTAA

mRNA sequence

ATGACGGGTTCAAATCCTACCCCTCCCATATCTTCATTCAATCATTTACTTGGTGGACTTACTAAGATTAAGCATTACTCTCAAGTATTTTCTCTCTACAATAAAATGCGCCTAGCCGAACTCTTGCTTGATTGCTTGACACTGAATATATTGATTAATTGCCTTTGTAATGTGAATCGGGTTAGCGAAGGTCTTGCGGCCATGGCGGTGATTTTAAGGAGAGGTGGAAATTGGAAGGAGGCTAAACATTCGTTAAATGAGATGATGGATCACGGTGTTCGATCAAATCTGGTTACAGTCAGTGTGTTGATTGATATGCTTTGCAAGGAAGGAAAGGTTATCAAGGCTCAGGAGTTCCTAAAGGCGGTGATTCAGACAAGCAATGTTTCAAATTCGCTTACTCATAAGGGAAAGAGGTCAGATGTGAAAACATATGGTGCCTTCTTAACTGGGCTTTTTCAGGCAGGCAAGGTTAGTGATGCAAAGAAGCTACTTGGTGTTATGAAAGCTTATGGTATTGCTGCAGATTCGTGTATATATCTTATTTTCTGGGTTGTGTAA

Coding sequence (CDS)

ATGACGGGTTCAAATCCTACCCCTCCCATATCTTCATTCAATCATTTACTTGGTGGACTTACTAAGATTAAGCATTACTCTCAAGTATTTTCTCTCTACAATAAAATGCGCCTAGCCGAACTCTTGCTTGATTGCTTGACACTGAATATATTGATTAATTGCCTTTGTAATGTGAATCGGGTTAGCGAAGGTCTTGCGGCCATGGCGGTGATTTTAAGGAGAGGTGGAAATTGGAAGGAGGCTAAACATTCGTTAAATGAGATGATGGATCACGGTGTTCGATCAAATCTGGTTACAGTCAGTGTGTTGATTGATATGCTTTGCAAGGAAGGAAAGGTTATCAAGGCTCAGGAGTTCCTAAAGGCGGTGATTCAGACAAGCAATGTTTCAAATTCGCTTACTCATAAGGGAAAGAGGTCAGATGTGAAAACATATGGTGCCTTCTTAACTGGGCTTTTTCAGGCAGGCAAGGTTAGTGATGCAAAGAAGCTACTTGGTGTTATGAAAGCTTATGGTATTGCTGCAGATTCGTGTATATATCTTATTTTCTGGGTTGTGTAA

Protein sequence

MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNRVSEGLAAMAVILRRGGNWKEAKHSLNEMMDHGVRSNLVTVSVLIDMLCKEGKVIKAQEFLKAVIQTSNVSNSLTHKGKRSDVKTYGAFLTGLFQAGKVSDAKKLLGVMKAYGIAADSCIYLIFWVV
Homology
BLAST of CaUC09G165920 vs. NCBI nr
Match: XP_038896203.1 (pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida])

HSP 1 Score: 166.8 bits (421), Expect = 1.8e-37
Identity = 130/372 (34.95%), Postives = 146/372 (39.25%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  SNPTPP  SFN LLGGL +IKHYSQVFSLYNKM LA L  +  TLNILINCLCNVNR
Sbjct: 98  MLRSNPTPPTYSFNLLLGGLAQIKHYSQVFSLYNKMCLAGLFPNFFTLNILINCLCNVNR 157

Query: 61  VSEGLAAMAVILRR---------------------------------------------- 120
           VSEG AAMA ILRR                                              
Sbjct: 158 VSEGFAAMAGILRRGYIPDKITYSTLIKGLCMEYRISEATRLFMRMQKLGCRPDVVTYGT 217

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 218 LIKGLCRTGNINIALKLHQEMLNETGQYGINCKPNVICYSSIIDGLCKDRREDEASELFE 277

Query: 181 -----------------------GGNWKEAKHSLNEMMDHGVRSNLVTVSVLIDMLCKEG 184
                                  GG W+EAK   NEM+D GV+ ++VT +VLIDMLCKEG
Sbjct: 278 EMKTRGMIPDVISYTSLIHGFCWGGKWEEAKRLFNEMVDQGVQPDMVTFNVLIDMLCKEG 337

BLAST of CaUC09G165920 vs. NCBI nr
Match: XP_016901072.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X3 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 9.0e-37
Identity = 125/372 (33.60%), Postives = 145/372 (38.98%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  SNPTPP+SSF HLL GLTKIKHYSQVF LYN+MRL+ L  DC TLNIL+NCLCN+NR
Sbjct: 87  MMCSNPTPPLSSFTHLLSGLTKIKHYSQVFYLYNQMRLSGLSPDCCTLNILLNCLCNLNR 146

Query: 61  VSEGLAAMAVILRR---------------------------------------------- 120
           V EGLA MA ILRR                                              
Sbjct: 147 VGEGLAVMAGILRRGYVPDIVTYTTLIKGLCMEHRISKATLLFTRMQKLGCTPNAITYGT 206

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 207 LIKGLCRTGNIDVALKLHQEMLNETSRYGINFKPIVVSYTIIIDALCKDRREDEARELFE 266

Query: 181 -----------------------GGNWKEAKHSLNEMMDHGVRSNLVTVSVLIDMLCKEG 184
                                  GG W+EAK   NEM++ G++ N+VT +VLID+LCKEG
Sbjct: 267 EMKAQGMIPSVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGIQPNVVTFNVLIDVLCKEG 326

BLAST of CaUC09G165920 vs. NCBI nr
Match: KAA0059626.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08159.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.5 bits (415), Expect = 9.0e-37
Identity = 125/372 (33.60%), Postives = 145/372 (38.98%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  SNPTPP+SSF HLL GLTKIKHYSQVF LYN+MRL+ L  DC TLNIL+NCLCN+NR
Sbjct: 87  MMCSNPTPPLSSFTHLLSGLTKIKHYSQVFYLYNQMRLSGLSPDCCTLNILLNCLCNLNR 146

Query: 61  VSEGLAAMAVILRR---------------------------------------------- 120
           V EGLA MA ILRR                                              
Sbjct: 147 VGEGLAVMAGILRRGYVPDIVTYTTLIKGLCMEHRISKATLLFTRMQKLGCTPNAITYGT 206

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 207 LIKGLCRTGNIDVALKLHQEMLNDTGRYGINFKPIVVSYTIIIDALCKDRREDEARELFE 266

Query: 181 -----------------------GGNWKEAKHSLNEMMDHGVRSNLVTVSVLIDMLCKEG 184
                                  GG W+EAK   NEM++ G++ N+VT +VLID+LCKEG
Sbjct: 267 EMKAQGMIPSVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGIQPNVVTFNVLIDVLCKEG 326

BLAST of CaUC09G165920 vs. NCBI nr
Match: KAE8646284.1 (hypothetical protein Csa_016592 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 9.0e-37
Identity = 126/372 (33.87%), Postives = 144/372 (38.71%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  SNPTPP+SSF HLL GL KIKHYSQVF LYN+MRL+ +  DC TLNIL+NCLCNVNR
Sbjct: 87  MMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNR 146

Query: 61  VSEGLAAMAVILRR---------------------------------------------- 120
           V EGLA MA ILRR                                              
Sbjct: 147 VGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGT 206

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 207 LMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFE 266

Query: 181 -----------------------GGNWKEAKHSLNEMMDHGVRSNLVTVSVLIDMLCKEG 184
                                  GG W+EAK   NEM++ GV+ N+VT +VLID+LCKEG
Sbjct: 267 EMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEG 326

BLAST of CaUC09G165920 vs. NCBI nr
Match: XP_038877920.1 (pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Benincasa hispida])

HSP 1 Score: 152.1 bits (383), Expect = 4.6e-33
Identity = 125/372 (33.60%), Postives = 139/372 (37.37%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  S+PTPP+SSFN LLGGL KIKHYSQVF LY KM LA    +  TLNIL+NCLCNVNR
Sbjct: 107 MMHSSPTPPMSSFNLLLGGLAKIKHYSQVFQLYYKMHLAGFFPNFFTLNILMNCLCNVNR 166

Query: 61  VSEGLAAMAVILRRG--------------------------------------------- 120
           VSEGLAAMA I R G                                             
Sbjct: 167 VSEGLAAMARIFRCGYVPNKMTYTTLIKGLCMELRINEATRLFMRMQKLGCMPDVVTYGT 226

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 227 LIKELCRTGNVNIALKLHQEMLNDTGQYGINCKPNVICYHIIIDGLCKDGREDEAKELLD 286

Query: 181 ------------------------GNWKEAKHSLNEMMDHGVRSNLVTVSVLIDMLCKEG 184
                                   GNWKEAK  LNEM+D GV+ N+VT +VLIDM CK G
Sbjct: 287 KMKAQGMVPNVFPYNSLIHSFCCSGNWKEAKRLLNEMVDQGVQPNVVTFNVLIDMFCKAG 346

BLAST of CaUC09G165920 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-11
Identity = 58/216 (26.85%), Postives = 95/216 (43.98%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           +T     P + +FN L+ GL   +++     L+ +MR      D  T N+LI+ LC+  +
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGK 450

Query: 61  VSEGL----------AAMAVI--------LRRGGNWKEAKHSLNEMMDHGVRSNLVTVSV 120
           + E L           A +VI          +    +EA+   +EM  HGV  N VT + 
Sbjct: 451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510

Query: 121 LIDMLCKEGKVIKAQEFLKAVI-------------------------QTSNVSNSLTHKG 174
           LID LCK  +V  A + +  +I                         + +++  ++T  G
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570

BLAST of CaUC09G165920 vs. ExPASy Swiss-Prot
Match: Q9SI78 (Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana OX=3702 GN=At1g62720 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-11
Identity = 54/180 (30.00%), Postives = 85/180 (47.22%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  S P P I  F+ +L  + K K+Y  V SL++ M +  +  D  + NI+INCLC   R
Sbjct: 60  MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLC---R 119

Query: 61  VSEGLAAMAVILRRGGNWKEAKHSLNEMMDHGVRSNLVTVSVLIDMLCKEGKVIKAQEFL 120
            S  + A++V+               +MM  G   ++VTVS LI+  C+  +V  A + +
Sbjct: 120 CSRFVIALSVV--------------GKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLV 179

Query: 121 KAVIQTSNVSNSLTHKGKRSDVKTYGAFLTGLFQAGKVSDAKKLLGVMKAYGIAADSCIY 180
                     + +   G R DV  Y   + G  + G V+DA +L   M+  G+ AD+  Y
Sbjct: 180 ----------SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTY 212

BLAST of CaUC09G165920 vs. ExPASy Swiss-Prot
Match: Q9CAN5 (Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g63080 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.8e-11
Identity = 55/198 (27.78%), Postives = 91/198 (45.96%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  S P P I  F+ LL  + K+K +  V S   KM +  +  +  T NI+INCLC  ++
Sbjct: 56  MVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQ 115

Query: 61  VSEGLAAMAVILR------------------RGGNWKEAKHSLNEMMDHGVRSNLVTVSV 120
           +S  LA +  +++                   G    EA   +++M++ G + + VT + 
Sbjct: 116 LSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTT 175

Query: 121 LIDMLCKEGKVIKAQEFLKAVIQTSNVSNSLTHKGKRSDVKTYGAFLTGLFQAGKVSDAK 180
           L+  L +  K  +A   ++ ++           KG + D+ TYGA + GL + G+   A 
Sbjct: 176 LVHGLFQHNKASEAVALVERMVV----------KGCQPDLVTYGAVINGLCKRGEPDLAL 235

BLAST of CaUC09G165920 vs. ExPASy Swiss-Prot
Match: Q9LQ15 (Pentatricopeptide repeat-containing protein At1g62914, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62914 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11
Identity = 55/198 (27.78%), Postives = 88/198 (44.44%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  S P P I  F+ LL  + K+  +  V S   KM +  +  +  T NILINC C  +R
Sbjct: 69  MAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSR 128

Query: 61  VSEGLAAMAVILR------------------RGGNWKEAKHSLNEMMDHGVRSNLVTVSV 120
           +S  LA +  +++                   G    +A   +++M++ G + + VT + 
Sbjct: 129 LSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTT 188

Query: 121 LIDMLCKEGKVIKAQEFLKAVIQTSNVSNSLTHKGKRSDVKTYGAFLTGLFQAGKVSDAK 180
           LI  L    K  +A   +  ++Q          +G + D+ TYGA + GL + G    A 
Sbjct: 189 LIHGLFLHNKASEAVALIDRMVQ----------RGCQPDLVTYGAVVNGLCKRGDTDLAL 248

BLAST of CaUC09G165920 vs. ExPASy Swiss-Prot
Match: P0C7R3 (Pentatricopeptide repeat-containing protein At1g64583, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g64583 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 50/172 (29.07%), Postives = 77/172 (44.77%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  S   P +  +N L+ GL K    +    L N+M    L  D +T N L+  LC    
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLC---- 226

Query: 61  VSEGLAAMAVILRRGGNWKEAKHSLNEMMDHGVRSNLVTVSVLIDMLCKEGKVIKAQEFL 120
                          G W +A   L +MM   +  ++VT + LID+  K+G + +AQE  
Sbjct: 227 -------------YSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELY 286

Query: 121 KAVIQTSNVSNSLTHKGKRSDVKTYGAFLTGLFQAGKVSDAKKLLGVMKAYG 173
           K +IQ+S   N++          TY + + GL   G++ DAKK   +M + G
Sbjct: 287 KEMIQSSVDPNNV----------TYNSIINGLCMHGRLYDAKKTFDLMASKG 311

BLAST of CaUC09G165920 vs. ExPASy TrEMBL
Match: A0A5D3CCW0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00420 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 4.3e-37
Identity = 125/372 (33.60%), Postives = 145/372 (38.98%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  SNPTPP+SSF HLL GLTKIKHYSQVF LYN+MRL+ L  DC TLNIL+NCLCN+NR
Sbjct: 87  MMCSNPTPPLSSFTHLLSGLTKIKHYSQVFYLYNQMRLSGLSPDCCTLNILLNCLCNLNR 146

Query: 61  VSEGLAAMAVILRR---------------------------------------------- 120
           V EGLA MA ILRR                                              
Sbjct: 147 VGEGLAVMAGILRRGYVPDIVTYTTLIKGLCMEHRISKATLLFTRMQKLGCTPNAITYGT 206

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 207 LIKGLCRTGNIDVALKLHQEMLNDTGRYGINFKPIVVSYTIIIDALCKDRREDEARELFE 266

Query: 181 -----------------------GGNWKEAKHSLNEMMDHGVRSNLVTVSVLIDMLCKEG 184
                                  GG W+EAK   NEM++ G++ N+VT +VLID+LCKEG
Sbjct: 267 EMKAQGMIPSVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGIQPNVVTFNVLIDVLCKEG 326

BLAST of CaUC09G165920 vs. ExPASy TrEMBL
Match: A0A1S4DYL3 (pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492587 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 4.3e-37
Identity = 125/372 (33.60%), Postives = 145/372 (38.98%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  SNPTPP+SSF HLL GLTKIKHYSQVF LYN+MRL+ L  DC TLNIL+NCLCN+NR
Sbjct: 87  MMCSNPTPPLSSFTHLLSGLTKIKHYSQVFYLYNQMRLSGLSPDCCTLNILLNCLCNLNR 146

Query: 61  VSEGLAAMAVILRR---------------------------------------------- 120
           V EGLA MA ILRR                                              
Sbjct: 147 VGEGLAVMAGILRRGYVPDIVTYTTLIKGLCMEHRISKATLLFTRMQKLGCTPNAITYGT 206

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 207 LIKGLCRTGNIDVALKLHQEMLNETSRYGINFKPIVVSYTIIIDALCKDRREDEARELFE 266

Query: 181 -----------------------GGNWKEAKHSLNEMMDHGVRSNLVTVSVLIDMLCKEG 184
                                  GG W+EAK   NEM++ G++ N+VT +VLID+LCKEG
Sbjct: 267 EMKAQGMIPSVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGIQPNVVTFNVLIDVLCKEG 326

BLAST of CaUC09G165920 vs. ExPASy TrEMBL
Match: A0A5A7UUW8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00730 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.6e-31
Identity = 120/372 (32.26%), Postives = 139/372 (37.37%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  S P  PISSFN LLGGL KI HYSQ+FSLYNKM LA L    +TLNIL+NCLCNVNR
Sbjct: 31  MVRSYPISPISSFNRLLGGLAKINHYSQLFSLYNKMCLAGLSPSVVTLNILVNCLCNVNR 90

Query: 61  VSEGLAAMAVILRRG--------------------------------------------- 120
           VSE LAA+A ILRRG                                             
Sbjct: 91  VSEALAALAGILRRGYIPDIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPNVVTYGT 150

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 151 LIKGLCQTGNVNIALKLHQEMLNDTSQYGINCKPNVISYSIIIDGLCKVGREDEAKETFE 210

Query: 181 ------------------------GNWKEAKHSLNEMMDHGVRSNLVTVSVLIDMLCKEG 184
                                   G W E+K   +EM+D GV+ N VT SVLID LCKEG
Sbjct: 211 EMKAQGMVPNVISYSSLIHGFCCAGKWDESKQLFDEMVDQGVQPNKVTFSVLIDTLCKEG 270

BLAST of CaUC09G165920 vs. ExPASy TrEMBL
Match: A0A5A7TFJ3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001980 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.7e-28
Identity = 110/328 (33.54%), Postives = 129/328 (39.33%), Query Frame = 0

Query: 10  ISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNRVSEGLAAMA 69
           I SFN LL GL KI+HYSQVFSLY +M LA L  D LTLNILINCLCNVNR++EGLAAMA
Sbjct: 91  IFSFNRLLAGLAKIEHYSQVFSLYKEMHLAGLSPDLLTLNILINCLCNVNRINEGLAAMA 150

Query: 70  VILRRG------------------------------------------------------ 129
            I+RRG                                                      
Sbjct: 151 GIMRRGYIPDEVTFTTLIKGLCVQHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCAIG 210

Query: 130 ----------------------------------------GNWKEAKHSLNEMMDHGVRS 184
                                                   GNW+EA    NEM+D GV+ 
Sbjct: 211 NINLALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQP 270

BLAST of CaUC09G165920 vs. ExPASy TrEMBL
Match: A0A1S3BGA8 (pentatricopeptide repeat-containing protein At1g62720-like OS=Cucumis melo OX=3656 GN=LOC103489704 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.7e-28
Identity = 110/328 (33.54%), Postives = 129/328 (39.33%), Query Frame = 0

Query: 10  ISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNRVSEGLAAMA 69
           I SFN LL GL KI+HYSQVFSLY +M LA L  D LTLNILINCLCNVNR++EGLAAMA
Sbjct: 91  IFSFNRLLAGLAKIEHYSQVFSLYKEMHLAGLSPDLLTLNILINCLCNVNRINEGLAAMA 150

Query: 70  VILRRG------------------------------------------------------ 129
            I+RRG                                                      
Sbjct: 151 GIMRRGYIPDEVTFTTLIKGLCVQHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCAIG 210

Query: 130 ----------------------------------------GNWKEAKHSLNEMMDHGVRS 184
                                                   GNW+EA    NEM+D GV+ 
Sbjct: 211 NINLALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQP 270

BLAST of CaUC09G165920 vs. TAIR 10
Match: AT1G62720.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 7.4e-13
Identity = 54/180 (30.00%), Postives = 85/180 (47.22%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  S P P I  F+ +L  + K K+Y  V SL++ M +  +  D  + NI+INCLC   R
Sbjct: 60  MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLC---R 119

Query: 61  VSEGLAAMAVILRRGGNWKEAKHSLNEMMDHGVRSNLVTVSVLIDMLCKEGKVIKAQEFL 120
            S  + A++V+               +MM  G   ++VTVS LI+  C+  +V  A + +
Sbjct: 120 CSRFVIALSVV--------------GKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLV 179

Query: 121 KAVIQTSNVSNSLTHKGKRSDVKTYGAFLTGLFQAGKVSDAKKLLGVMKAYGIAADSCIY 180
                     + +   G R DV  Y   + G  + G V+DA +L   M+  G+ AD+  Y
Sbjct: 180 ----------SKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTY 212

BLAST of CaUC09G165920 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 7.4e-13
Identity = 58/216 (26.85%), Postives = 95/216 (43.98%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           +T     P + +FN L+ GL   +++     L+ +MR      D  T N+LI+ LC+  +
Sbjct: 391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGK 450

Query: 61  VSEGL----------AAMAVI--------LRRGGNWKEAKHSLNEMMDHGVRSNLVTVSV 120
           + E L           A +VI          +    +EA+   +EM  HGV  N VT + 
Sbjct: 451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510

Query: 121 LIDMLCKEGKVIKAQEFLKAVI-------------------------QTSNVSNSLTHKG 174
           LID LCK  +V  A + +  +I                         + +++  ++T  G
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570

BLAST of CaUC09G165920 vs. TAIR 10
Match: AT1G63080.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-12
Identity = 55/198 (27.78%), Postives = 91/198 (45.96%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  S P P I  F+ LL  + K+K +  V S   KM +  +  +  T NI+INCLC  ++
Sbjct: 56  MVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQ 115

Query: 61  VSEGLAAMAVILR------------------RGGNWKEAKHSLNEMMDHGVRSNLVTVSV 120
           +S  LA +  +++                   G    EA   +++M++ G + + VT + 
Sbjct: 116 LSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTT 175

Query: 121 LIDMLCKEGKVIKAQEFLKAVIQTSNVSNSLTHKGKRSDVKTYGAFLTGLFQAGKVSDAK 180
           L+  L +  K  +A   ++ ++           KG + D+ TYGA + GL + G+   A 
Sbjct: 176 LVHGLFQHNKASEAVALVERMVV----------KGCQPDLVTYGAVINGLCKRGEPDLAL 235

BLAST of CaUC09G165920 vs. TAIR 10
Match: AT1G62914.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 55/198 (27.78%), Postives = 88/198 (44.44%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  S P P I  F+ LL  + K+  +  V S   KM +  +  +  T NILINC C  +R
Sbjct: 69  MAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSR 128

Query: 61  VSEGLAAMAVILR------------------RGGNWKEAKHSLNEMMDHGVRSNLVTVSV 120
           +S  LA +  +++                   G    +A   +++M++ G + + VT + 
Sbjct: 129 LSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTT 188

Query: 121 LIDMLCKEGKVIKAQEFLKAVIQTSNVSNSLTHKGKRSDVKTYGAFLTGLFQAGKVSDAK 180
           LI  L    K  +A   +  ++Q          +G + D+ TYGA + GL + G    A 
Sbjct: 189 LIHGLFLHNKASEAVALIDRMVQ----------RGCQPDLVTYGAVVNGLCKRGDTDLAL 248

BLAST of CaUC09G165920 vs. TAIR 10
Match: AT1G64583.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-11
Identity = 50/172 (29.07%), Postives = 77/172 (44.77%), Query Frame = 0

Query: 1   MTGSNPTPPISSFNHLLGGLTKIKHYSQVFSLYNKMRLAELLLDCLTLNILINCLCNVNR 60
           M  S   P +  +N L+ GL K    +    L N+M    L  D +T N L+  LC    
Sbjct: 167 MVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLC---- 226

Query: 61  VSEGLAAMAVILRRGGNWKEAKHSLNEMMDHGVRSNLVTVSVLIDMLCKEGKVIKAQEFL 120
                          G W +A   L +MM   +  ++VT + LID+  K+G + +AQE  
Sbjct: 227 -------------YSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELY 286

Query: 121 KAVIQTSNVSNSLTHKGKRSDVKTYGAFLTGLFQAGKVSDAKKLLGVMKAYG 173
           K +IQ+S   N++          TY + + GL   G++ DAKK   +M + G
Sbjct: 287 KEMIQSSVDPNNV----------TYNSIINGLCMHGRLYDAKKTFDLMASKG 311

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038896203.11.8e-3734.95pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida][more]
XP_016901072.19.0e-3733.60PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X3... [more]
KAA0059626.19.0e-3733.60pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08159... [more]
KAE8646284.19.0e-3733.87hypothetical protein Csa_016592 [Cucumis sativus][more]
XP_038877920.14.6e-3333.60pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Benincasa... [more]
Match NameE-valueIdentityDescription
Q9LFF11.0e-1126.85Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop... [more]
Q9SI781.0e-1130.00Pentatricopeptide repeat-containing protein At1g62720 OS=Arabidopsis thaliana OX... [more]
Q9CAN51.8e-1127.78Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidop... [more]
Q9LQ152.3e-1127.78Pentatricopeptide repeat-containing protein At1g62914, mitochondrial OS=Arabidop... [more]
P0C7R31.5e-1029.07Pentatricopeptide repeat-containing protein At1g64583, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A5D3CCW04.3e-3733.60Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S4DYL34.3e-3733.60pentatricopeptide repeat-containing protein At1g63330-like isoform X3 OS=Cucumis... [more]
A0A5A7UUW84.6e-3132.26Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7TFJ31.7e-2833.54Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BGA81.7e-2833.54pentatricopeptide repeat-containing protein At1g62720-like OS=Cucumis melo OX=36... [more]
Match NameE-valueIdentityDescription
AT1G62720.17.4e-1330.00Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT3G53700.17.4e-1326.85Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G63080.11.3e-1227.78Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G62914.11.6e-1227.78pentatricopeptide (PPR) repeat-containing protein [more]
AT1G64583.11.1e-1129.07Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 144..173
e-value: 0.0025
score: 18.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 10..57
e-value: 1.6E-8
score: 34.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 144..176
e-value: 7.9E-5
score: 20.6
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 92..121
e-value: 1.2E-5
score: 24.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 141..175
score: 9.711769
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 67..184
e-value: 2.5E-18
score: 68.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..66
e-value: 4.4E-8
score: 34.8
NoneNo IPR availablePANTHERPTHR47938:SF12PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5, MITOCHONDRIALcoord: 77..135
NoneNo IPR availablePANTHERPTHR47938:SF12PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5, MITOCHONDRIALcoord: 131..182
NoneNo IPR availablePANTHERPTHR47938RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATEDcoord: 77..135
NoneNo IPR availablePANTHERPTHR47938:SF12PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5, MITOCHONDRIALcoord: 1..75
NoneNo IPR availablePANTHERPTHR47938RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATEDcoord: 1..75
NoneNo IPR availablePANTHERPTHR47938RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATEDcoord: 131..182

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CaUC09G165920.1CaUC09G165920.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding