CaUC03G057750 (gene) Watermelon (USVL246-FR2) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTTACACCCCTAGCGACTAGGAAGTCCAATTTTGTTAGCGAAAAAAGTATAATTGTTTTCCCTCTCGCCGTCGCTACTGCATTGTCTACTCCGTTCAACGGACGTCGATCGGACCAGTTCCTCGTACTTCTCAAGATCCGCCCCACTCCTATCGCCATGGTAATTTCCTTTCTCTTCGTCTTACTCAGAACTCTTCTATATTTTCACGATACAATTGCGTCGATTAATGAGAACGCTGTCCTAATCTGCATTTTAATTATTCATCTTGATGTCACAATTTGACCTAATTAAACTGAGTTTTCGTGGGTCGGTGTTGGTTTTTGATGGTTCTTAGACAGCCAACTTGTTTTTGCTTCCGTTTGGATATATATATATACATGTTTTTATTAGGATTTTGCTTGTTGATTATTGTAATTAAGGGTTTGTCTTTTAATGTTCTGCATATGGATCAAATCCAAGTTTCTTGTTCTGCATTGCACCTTTTCTCCAGTACCACAGCCACTACCCGGCTGGGTCTCCTTTTCATTTGGTGGCTTTCTATTTAAGATGAAAAAATTGGGCCTAGTAGTGTTTCTGAGCTTAAATATGATATAATGTCTAATTGCACGTTATTGGGTTTTCATTGGTTGATAGTCTTGGTGCGAATTCAATTCTGTTGCACGAAATTCAGTTCTCTCATTCAATTTGGCAAAGAGAATTGCCGAATTTGCCATCATCAGATTCTTCAATGGCATTTTAGGTCTGTAACAAACATCCAATCAATGGAATTATTCCCTTATGGGGGAAAGTAATTAAAGAATATATATCTAACAGCAGATGGTATTGGCTGAACTGAGATAGAAGGTTCAAGTGCTATGTCACATCATTTGCGCCCTTGAACATTACACTCGCGCTTGAGTGTCTTTTGGCCAATTCGTATACATATGAGGCATGGTACTTTGATAAGTCCTTGAATAGCTAAACTATGAAAATGCGTAAATTATTTGGTATTTGAATCGTATCCCATAGTTTGTTATAAGTTCTAATTGGACTAGCTGTACCACCCTATGATTCTCTTGAAATTGCTTAGTTCACCTGTGCTTGTTTGCAGCTTTTGCATATTTTGCATTAGTCATACGAAGTTTTTTCTTCCAACATTTCCTCATGCGACCTAGTAAGTTTATCTGCCAATGGTCCAAGAGATAGAATTTAGGATCTCTCTCCCTTGAGGCTTTATATATAGACTTCACTTTTCTGTTGTTAAATTTTAATATGTATTGAGCTAAGGATAAGTCCTGATGTTGGGGTGTTTTTGTTTTCAGCATCGTAATAGGTTCCCCAATGTTTTCTTTCTAACTTTGTTTGATAGTAAAGTTACCTTTCATTCAGTTGAAAAGCCAGATTGACCTTTAGGGTTGATGATCACTGACCGTACAAATTCTTTCTTCAAAAGGGAAGTGATCCCACTGTTTGTATGAGCTCACCAAGGCATACAGTTTTTGATGTTACGTACTCCAACATTTTCTAGGCTTACTTAGCTTCTCAGTTCTCATTAAGCAAACCAAATTCAAAAAGTTTCTATCAAAGTGAGTTTAGCTCAACGCTAATTGGCATGGCCTTCCTCTCTAGAGGTTGGAGGTTCAATCCTCCATCCCTACAATTGTTGTACTAAAAAATATTCAAAAGTTTATGTTTTAAGGTTTCAAAGCCTTGCTGATGTATTCAACCTTGATGAAATTGTCCAGAAGAGCTCACTTATTGGACAAATGGAAGGAAAGAAATAACAGAATTTTCAATGACAAGTATATACCTATTGTGAATTTTATGATCTTATTAAAAGAAATGTGTCACAACTAGAGTGGTTTACAGAAAGTGTTTTTGGGTGAGAGTACCTTACAGAAAGTGTTATTTTAGGTGATACATGCACACAGGTTTTTATAATTAATCCACTTGGTTTGTAATGAGGGTATTTCTTTTAATCTCCCATTTCAAGCAAGGAGATTTCACAAAGGCATCTTTCAACAAGTGGTGCCCGGTTTTATTTCCTTTGCCAATTCACCCATGTTATAGCTTGCTGTAGCAATCTCGTCTTTCAACTGGTTAAGGTATTATAACCTTGACAAAAAAAGTAGTTGTGGATTCCCACTTCCACATATTCTTTACTCAAAAAAAGAAATAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTAAACTATAAGGCAGAAAATATAAACAACAATAAGTTGAAATAACAAATCATGACAATGTGACTCCTAAAAAAATCCTTAAACAGAAAATGCTCAAATGAAGAGCAGATGATGTATTTCACCCATTTAATTCAAAATTAAGTAAAGAATGATGCTAAATTAATCTCAATTCATAGGATTATTAGAGACTGTCTCTTGTCTCCTTGACTAGTTATTTTATGATTGGTTTTTCTTTGATGAAAGTGTTTGTTTCTTGTCAACCACTGGAAAAGATGTCAGATTGCCAGTGGGTAAGTTCACTTGAGTTTCCTCCAAAGATAGACTATTGGAACCGTCAACCGTTGGCAAAAATTCACTACAGATGGGAATGTTATTGCAACATGTTGCAGATTCTACTTGGAAGTCATGTGTACAGACCAGGATGATGGTGCTTCCACATCACTTCGTTGTAGGATTAGCGGAAGATTTCACATTTATTGAAGATGTATGCATGTATAGCATTTGAGTCTGAAAAAACTTAAGGATTGATAGGATTTGCTGTATGTCGCAGAAAATGCTTATCCAGAGTAATTAATTAAATGGAAAAGTGACAACCACATATTATCTGCTAAAGAACAGTAGAAAGAACACGATTGCTATATCAAGTTTAGTTATTGTCTCACTGGTAAGTGGAATTTGGACAATACTTGATTTATGGAATTTATTTGGTCGAATAGCGAGATGTGCATAATGGCATTATTTGTTTCACTGATATTTGGACAATGATTAAAATCACTTGATTTGTGAAATTTTTCCATCCTAATTCTGAGATGTGTGCATAATTAGAATTGCATGTTTCATTCAGGAACAAATTATTTGGGCTTGATTATGACGTTGTTGAGTTCTTATTCTTTTGATTTAGGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCATACTACTGAGAAGGGTTCAGTGTGGGTTACTCTAAAACGATGTATGTGCATATCAACGTTGTTGATTGGTTTCATTTATCTTTGTGGTAATCTTTAGGAATCTGATTAGGTTCAAACTATATTGTATCTCATATTGTTGTAGCTTCACTGAAGTCCAAGGTGCAGAGAAATAAATTGACCACTGCTGGTGAACCTATCGAGTACAGGTGCCTCATCCGTGCAACTGATGGGAAGAAGAAAATTTCAACTTCAGTGAGTATTGACTCATCTTTTACGCTTTTTTAACCCTCTCCTCTTGCTCTCTCTTCTGAAAACTTTGCTTCAGCATTCAAGTTTTTCTAGTAAATTCTAAATTTACTCAAGCTGAAGTTTGCAAGCGACTGAATGGAAGGATGGTGTGTTTAGACATCGTTTCTTTTTACTTTATTTATGCTTTACTCTAATTTTGTATAACAACTCAATGCAACACTGGAGTGAGGGTGAAGTAATATAATGGATTCCACCCCCTCCACCGTCCCTCATTTCTCTATGTATTAGTTTTTTCTTCTGCTTGACCTTTGAATCATCTTTTATTCGTTTCATTCCTTTTCACAAACAGAAAAACCAAACCCCTATTGTAGGACTTCAATCAGCATATAGCCATTTCACATTTTTCAGATCTTATTATCTATTTCCAACTTTCTTGAATCCGAAGCATTTGTAACAACTCCTCCTGAATTGGCTAGGTTGGAGCAAAAGATCATCTGAGATTTCAAGCTTCCTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGAGAGAGAAAGGTCAAGAAGAAGGCACCAGAGGCAGAGAAGGGTCTGAAGAAAAAACCCAGGAAAGTATGA TTTACACCCCTAGCGACTAGGAAGTCCAATTTTGTTAGCGAAAAAAGTATAATTGTTTTCCCTCTCGCCGTCGCTACTGCATTGTCTACTCCGTTCAACGGACGTCGATCGGACCAGTTCCTCGTACTTCTCAAGATCCGCCCCACTCCTATCGCCATGGTAATTTCCTTTCTCTTCGTCTTACTCAGAACTCTTCTATATTTTCACGATACAATTGCGTCGATTAATGAGAACGCTCATCGTAATAGGTTCCCCAATGTTTTCTTTCTAACTTTGTTTGATAATTCTACTTGGAAGTCATGTGTACAGACCAGGATGATGGTGCTTCCACATCACTTCGTTGTAGGATTAGCGGAAGATTTCACATTTATTGAAGATGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCATACTACTGAGAAGGGTTCAGTGTGGGTTACTCTAAAACGATCTTCACTGAAGTCCAAGGTGCAGAGAAATAAATTGACCACTGCTGGTGAACCTATCGAGTACAGGTGCCTCATCCGTGCAACTGATGGGAAGAAGAAAATTTCAACTTCAGTTGGAGCAAAAGATCATCTGAGATTTCAAGCTTCCTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGAGAGAGAAAGGTCAAGAAGAAGGCACCAGAGGCAGAGAAGGGTCTGAAGAAAAAACCCAGGAAAGTATGA TTTACACCCCTAGCGACTAGGAAGTCCAATTTTGTTAGCGAAAAAAGTATAATTGTTTTCCCTCTCGCCGTCGCTACTGCATTGTCTACTCCGTTCAACGGACGTCGATCGGACCAGTTCCTCGTACTTCTCAAGATCCGCCCCACTCCTATCGCCATGGTAATTTCCTTTCTCTTCGTCTTACTCAGAACTCTTCTATATTTTCACGATACAATTGCGTCGATTAATGAGAACGCTCATCGTAATAGGTTCCCCAATGTTTTCTTTCTAACTTTGTTTGATAATTCTACTTGGAAGTCATGTGTACAGACCAGGATGATGGTGCTTCCACATCACTTCGTTGTAGGATTAGCGGAAGATTTCACATTTATTGAAGATGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCATACTACTGAGAAGGGTTCAGTGTGGGTTACTCTAAAACGATCTTCACTGAAGTCCAAGGTGCAGAGAAATAAATTGACCACTGCTGGTGAACCTATCGAGTACAGGTGCCTCATCCGTGCAACTGATGGGAAGAAGAAAATTTCAACTTCAGTTGGAGCAAAAGATCATCTGAGATTTCAAGCTTCCTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGAGAGAGAAAGGTCAAGAAGAAGGCACCAGAGGCAGAGAAGGGTCTGAAGAAAAAACCCAGGAAAGTATGA FTPLATRKSNFVSEKSIIVFPLAVATALSTPFNGRRSDQFLVLLKIRPTPIAMVISFLFVLLRTLLYFHDTIASINENAHRNRFPNVFFLTLFDNSTWKSCVQTRMMVLPHHFVVGLAEDFTFIEDVLLQLDPFLNELTSMFEHTTEKGSVWVTLKRSSLKSKVQRNKLTTAGEPIEYRCLIRATDGKKKISTSVGAKDHLRFQASYSTILKAHMTALKKRERKVKKKAPEAEKGLKKKPRKV Homology
BLAST of CaUC03G057750 vs. NCBI nr
Match: KAG6583884.1 (Signal recognition particle 14 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 219.5 bits (558), Expect = 3.1e-53 Identity = 134/225 (59.56%), Postives = 143/225 (63.56%), Query Frame = 0
BLAST of CaUC03G057750 vs. NCBI nr
Match: KGN66307.2 (hypothetical protein Csa_023187 [Cucumis sativus]) HSP 1 Score: 214.5 bits (545), Expect = 9.9e-52 Identity = 124/168 (73.81%), Postives = 131/168 (77.98%), Query Frame = 0
BLAST of CaUC03G057750 vs. NCBI nr
Match: XP_038893990.1 (signal recognition particle 14 kDa protein isoform X2 [Benincasa hispida]) HSP 1 Score: 209.1 bits (531), Expect = 4.1e-50 Identity = 111/117 (94.87%), Postives = 114/117 (97.44%), Query Frame = 0
BLAST of CaUC03G057750 vs. NCBI nr
Match: XP_038893989.1 (signal recognition particle 14 kDa protein isoform X1 [Benincasa hispida]) HSP 1 Score: 209.1 bits (531), Expect = 4.1e-50 Identity = 111/117 (94.87%), Postives = 114/117 (97.44%), Query Frame = 0
BLAST of CaUC03G057750 vs. NCBI nr
Match: KAG7019502.1 (Signal recognition particle 14 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 208.8 bits (530), Expect = 5.4e-50 Identity = 113/129 (87.60%), Postives = 119/129 (92.25%), Query Frame = 0
BLAST of CaUC03G057750 vs. ExPASy Swiss-Prot
Match: O04421 (Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP14 PE=2 SV=2) HSP 1 Score: 174.1 bits (440), Expect = 1.9e-42 Identity = 91/108 (84.26%), Postives = 99/108 (91.67%), Query Frame = 0
BLAST of CaUC03G057750 vs. ExPASy Swiss-Prot
Match: O04433 (Signal recognition particle 14 kDa protein OS=Oryza sativa subsp. japonica OX=39947 GN=SRP14 PE=2 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 1.9e-34 Identity = 76/116 (65.52%), Postives = 96/116 (82.76%), Query Frame = 0
BLAST of CaUC03G057750 vs. ExPASy Swiss-Prot
Match: P37108 (Signal recognition particle 14 kDa protein OS=Homo sapiens OX=9606 GN=SRP14 PE=1 SV=2) HSP 1 Score: 89.7 bits (221), Expect = 4.8e-17 Identity = 51/107 (47.66%), Postives = 73/107 (68.22%), Query Frame = 0
BLAST of CaUC03G057750 vs. ExPASy Swiss-Prot
Match: Q4R5C7 (Signal recognition particle 14 kDa protein OS=Macaca fascicularis OX=9541 GN=SRP14 PE=2 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 4.8e-17 Identity = 51/107 (47.66%), Postives = 73/107 (68.22%), Query Frame = 0
BLAST of CaUC03G057750 vs. ExPASy Swiss-Prot
Match: Q5RBX7 (Signal recognition particle 14 kDa protein OS=Pongo abelii OX=9601 GN=SRP14 PE=2 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 4.8e-17 Identity = 51/107 (47.66%), Postives = 73/107 (68.22%), Query Frame = 0
BLAST of CaUC03G057750 vs. ExPASy TrEMBL
Match: A0A6J1KGP7 (signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495612 PE=3 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 1.7e-49 Identity = 110/117 (94.02%), Postives = 113/117 (96.58%), Query Frame = 0
BLAST of CaUC03G057750 vs. ExPASy TrEMBL
Match: A0A5A7UG42 (Signal recognition particle 14 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00850 PE=3 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 1.7e-49 Identity = 110/117 (94.02%), Postives = 113/117 (96.58%), Query Frame = 0
BLAST of CaUC03G057750 vs. ExPASy TrEMBL
Match: A0A0A0LYE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534730 PE=3 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 1.7e-49 Identity = 110/117 (94.02%), Postives = 113/117 (96.58%), Query Frame = 0
BLAST of CaUC03G057750 vs. ExPASy TrEMBL
Match: A0A1S3BBI8 (signal recognition particle 14 kDa protein OS=Cucumis melo OX=3656 GN=LOC103487869 PE=3 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 1.7e-49 Identity = 110/117 (94.02%), Postives = 113/117 (96.58%), Query Frame = 0
BLAST of CaUC03G057750 vs. ExPASy TrEMBL
Match: A0A6J1EG32 (signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434001 PE=3 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 6.4e-49 Identity = 109/117 (93.16%), Postives = 113/117 (96.58%), Query Frame = 0
BLAST of CaUC03G057750 vs. TAIR 10
Match: AT2G43640.1 (Signal recognition particle, SRP9/SRP14 subunit ) HSP 1 Score: 174.1 bits (440), Expect = 1.4e-43 Identity = 91/108 (84.26%), Postives = 99/108 (91.67%), Query Frame = 0
BLAST of CaUC03G057750 vs. TAIR 10
Match: AT2G43640.2 (Signal recognition particle, SRP9/SRP14 subunit ) HSP 1 Score: 174.1 bits (440), Expect = 1.4e-43 Identity = 91/108 (84.26%), Postives = 99/108 (91.67%), Query Frame = 0
BLAST of CaUC03G057750 vs. TAIR 10
Match: AT2G43640.3 (Signal recognition particle, SRP9/SRP14 subunit ) HSP 1 Score: 146.7 bits (369), Expect = 2.4e-35 Identity = 81/108 (75.00%), Postives = 90/108 (83.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL246-FR2) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|