CcUC06G120650 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC06G120650
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr06: 22473711 .. 22476759 (-)
RNA-Seq ExpressionCcUC06G120650
SyntenyCcUC06G120650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTCCAGAAAGCTCCAACCAAATTTCTTCTCTCTTATACGCGAAGTAATCACTACCGGTGCTAATAAGCCCTTTGCATATGTATGATTTCTATAAGCGGACTGCAAAAATTTCATGTTTGTATTTTACAGATGATAAAGATGTTTCCTAGGTGACGACGGTGACTCTCGCTTCCACTGAGATTGAAGGTGTTCCGACAAAAGTCGAAAGCGGGAAAGTAAGGTTAGACATGATTCAAAATCAAATTTCAAAACTGCCCCTATTCAAAATTCGTACACTCAGAACTTCTGTTCCGACACTATTTTCATGCCAGCACGGCGTGTTTTCTATATTATTATTATTATTTCTTTTTTTCGATTTCGTAAAGTCTGCCTACAATTTGTTCTTTTGAAATACGTGTAGAGATAGATCGTCCTGGTGGCTGTATGTGTATTTTGGATCTATTCTTGTGAAGTGTTTGGGGAACAAGTTCAACTAAGAAATTTTCCATGATAAGCTGATTGGAATCTACAAAGTTAAAAATAGCCTAATTAGATAATGAAAGCGGATTATACTATATAATTAGCCTGCTAAGATTCTCTAGAGATTGTACCTTTTTCTAGGGAACATAAAATCTTCTTTACCGCCACAAATCAAAGTTGGGTTGACTCAGAATTTGAGCCTAATAATATTATTAGAAGGATGTTCCCATTAATGTCCGTTGAAGTGGGGCATCTGGTTCTTATCTGTTTTTATATATAAGAATGGTTTGATGCTTAAAGGACCATAAATTATTGAGCTGAAAATTGATTTTATCTCCTTAGGAACTTGCTATTCACACAGATTCTGAATCTTATTCAATACCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCCCCCCCCCCCCCCCCTTCTCTTTCATAATCTTTTCCCCCTGTTTAACCTTCTGGTTCAATCTGAAAGAGCTCACTGACCTAAGTTTAAGCCTTAATAGTTTTCATTTCAATTTGATTCTATGTTTCTAAAGCAAACATTGACGTCCCATGGAGGACCATCCAAACACAGTATTTGGATATGTTTGTTCCCGTTTTGCGCACCCATTAGAAAGAGAGAGTAGCTAGCTAATATTTCAATGCTAGAATGGGAAAATGGGCCTTCACCCATGATATCTATATTTAGGATCATTCTAAGGGCTTACATTATTGTTGTTAGTCATTAAAAAAGAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAGGCAGCCTTTGGATAGGGATCGGATGCCAAGGAAGACCATATAATCGCATAAGGAGAGCCTTCCAAAATTCCTTCCCGCTTTAAACTGCACCACCTGAAAGATAGAGCACCCAAAATTGTATCACACACCCAAGTGACTAACAAACAAATTAAACCGCATCTACTGGTTAATTTTATTAACCACTTTTTGAGGGGCAGATAAACAGAGGTGTAAATGTTTTTAATTGATATAAACTTACCGAAATCTCTTGGTGTTTTGCATTTAAAACACTCCATCCTGCTTGCATAATTATGTACTCCGCATCCCATTCTGCACAACATAACATTAACTATTAATTTAGCATATTTAATGCTGGTATGAATTTAAATAACAATAACCAACTACGGTATATATGTTTTCTGTATGATCTTTTGAGTAAGGAAAATTTGAAGTTCTCTAGCTAAGCAAGTGTAAATTTATGCAGATTCTATATCATGTTCAGAATTACTCCAAACATGTTTTGATCATTCAAAATTTGGTTAAAAATTTGATTTCTTACTCTTGTAAACTTGATTTTTATACCATCTAAATAATTTTGATTAATTACAAATATGTTTTGGAGTGATTCTCAACGTGAAATGATTTTAACCATTACGAAATTGCTCCTACTTCAGCACATACATACAATAACAACTTCAACTGTAAAGTTTATTATTGTTCTGTGTGTACCTGGGGCAAATCCAGTCTCCAGATTTCCATCCAGGTGGGATGCTTGCATCAGATCCATACTGATCAGAACCGATCATGTAGGCGCCATAATCACCAGGATAGACGGACTTAAATGCACCACATCTAAAGCAGTTGGGGCGGCTGGCATAATTGTGAGCTCCGCAGCTGACAGTGGTGCAGTACCAGTCTCCGGCCAACGCCTCCGTCTTGTTGTAACTGTAAGTTGAAGGGTCTGGGCCTCCATACTTGGGGTAAGCACAACGATGGCATGCTTCTCTTTTTTTGAAGTTGACGTTCTGGCAAACGTTGCATATCCAGTCTCCTGCTGACCAGCTCATTCCTTTCTATATATAAAAATCCCATTACTCATAAGTTGAGAGATAAACAAATAAAAAACTGCATAATAAAGTGACTAAAACTCAGTCATGTTCAAGCTTTGGAGTGCAAAACCAAAAAAAAAGGAAGAAGAAACTTGGACTTTAAATTTTGAATACCCTTTTTCCCCAAAAGCCTAGTATGGATATCTAACTTTTTTTTTTTTTCCCTCTAATACAGGCCAATAGAGACGGAGAAAGAAAAAAAAGAAATAGTTTGATTGTTGAAGTAGGATGCTCACCTTGATGAAGAAAAGAAGATGGATGGAATAATGAATGGTTCTGTTGGGTAATAGGTGAATTTGAATTGGTGGAAGAGAATTTAAATTTTGTTATAAGTGAGAGTTTATTGAATTTGTTTGCTGGGGGGACGAGGGGTTTATATAGTTGTCCAAGTTCTCTTAGCGTTGGGGTCCATTTTATGGTGGTTTCTCTTTTATTTCCTTGCCTTTTCACGGATGGTTTCCTCGTGATGCGATTCCCGAAGTTGAATTTTTTTCCTTCTTTTCTTTATCTTTAGATTAGG

mRNA sequence

GGCTCCAGAAAGCTCCAACCAAATTTCTTCTCTCTTATACGCGAAGTAATCACTACCGGTGCTAATAAGCCCTTTGCATATGTGACGACGGTGACTCTCGCTTCCACTGAGATTGAAGGTGTTCCGACAAAAGTCGAAAGCGGGAAAGTAAGGTGGGATGCTTGCATCAGATCCATACTGATCAGAACCGATCATGTAGGCGCCATAATCACCAGGATAGACGGACTTAAATGCACCACATCTAAAGCAGTTGGGGCGGCTGGCATAATTGTGAGCTCCGCAGCTGACAGTGGTGCAGTACCAGTCTCCGGCCAACGCCTCCGTCTTGTTGTAACTATTAGG

Coding sequence (CDS)

GGCTCCAGAAAGCTCCAACCAAATTTCTTCTCTCTTATACGCGAAGTAATCACTACCGGTGCTAATAAGCCCTTTGCATATGTGACGACGGTGACTCTCGCTTCCACTGAGATTGAAGGTGTTCCGACAAAAGTCGAAAGCGGGAAAGTAAGGTGGGATGCTTGCATCAGATCCATACTGATCAGAACCGATCATGTAGGCGCCATAATCACCAGGATAGACGGACTTAAATGCACCACATCTAAAGCAGTTGGGGCGGCTGGCATAATTGTGAGCTCCGCAGCTGACAGTGGTGCAGTACCAGTCTCCGGCCAACGCCTCCGTCTTGTTGTAACTATTAGG

Protein sequence

GSRKLQPNFFSLIREVITTGANKPFAYVTTVTLASTEIEGVPTKVESGKVRWDACIRSILIRTDHVGAIITRIDGLKCTTSKAVGAAGIIVSSAADSGAVPVSGQRLRLVVTIR
Homology
[Close]
BLAST of CcUC06G120650 vs. NCBI nr
Match: KAG6589863.1 (hypothetical protein SDJN03_15286, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.4 bits (311), Expect = 6.3e-25
Identity = 69/89 (77.53%), Postives = 72/89 (80.90%), Query Frame = 0 

Query: 35  STEIEGVPTKVESGKV----------RWDACIRSILIRTDHVGAIITRIDGLKCTTSKAV 94
           STEIEGV TK+ESGKV          RWDACIRSILI T HVGAIITRIDGLKCTTSKAV
Sbjct: 300 STEIEGVATKIESGKVMANPVSRFPSRWDACIRSILIGTHHVGAIITRIDGLKCTTSKAV 359

Query: 95  GAAGIIVSSAADSGAVPVSGQRLRLVVTI 114
            AAG+IVSSAAD  AVPVSGQ LRLVVT+
Sbjct: 360 RAAGVIVSSAADGSAVPVSGQHLRLVVTV 388

[Close]
BLAST of CcUC06G120650 vs. NCBI nr
Match: KAG7023536.1 (hypothetical protein SDJN02_14562, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-19
Identity = 69/130 (53.08%), Postives = 71/130 (54.62%), Query Frame = 0 

Query: 35  STEIEGVPTKVESGKV-------------------------------------------- 94
           STEIEGV TK+ESGKV                                            
Sbjct: 82  STEIEGVATKIESGKVIDGVGSYVYFGSVLVQVQRDLLSKEFEILSLKVMQFIVVYVPRA 141

Query: 95  --------RWDACIRSILIRTDHVGAIITRIDGLKCTTSKAVGAAGIIVSSAADSGAVPV 113
                   RWDACIRSILI T HVGAIITRIDGLKCTTSKAV AAG+IVSSAAD  AVPV
Sbjct: 142 NPVSRFPSRWDACIRSILIGTHHVGAIITRIDGLKCTTSKAVRAAGVIVSSAADGSAVPV 201

The following BLAST results are available for this feature:
BLAST of CcUC06G120650 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6589863.16.3e-2577.53hypothetical protein SDJN03_15286, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7023536.11.0e-1953.08hypothetical protein SDJN02_14562, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CcUC06G120650 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC06G120650 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC06G120650 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC06G120650.1CcUC06G120650.1mRNA