Clc09G08450 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTACACGTACAACGAACATAGTCATTTACTAGTTGAAACAAAAGTAAAGGTTTGTAATTATTGGTAAGATGAACGACTCATTAGTTGAATGAGAGAGGAAGAGTACAAATAGGTTTAAATTGTTTGTTGATTTCAAAATAAGTTATTTTGACCACTTGCTAGTGTTACCAACTTTTGTTTATCCCCTTCCTCACTTTTCTTGCTCTATCTTATCAAATCGGTCACCCGTCTTTAAATTGCAATCTAAAAACTAGATATTTCAAAAATATAAATATTAAAATGGACTCAACGCCAAAATATAAAGCCCGAAATAAACCTTTTTTAATTCTTATAAAAAAGCATAAATAATTACACACACGTGTACATGTTTGCGCACACACATGATCTGATTTTTTTATTTCATTTTATTTTATTATTATTTTTTAACATTAGGTAAATCTCTGTTGCACTCACTTGACAAACAAATGCATTATTTGCCATTTTACTTCGACCCATTCATGTAGACATTTTATCGAGTCTTTTGCATGAATGGCCTAAAATTTATTCCCAAAATGAAATTTGTCCCACTTTTTAAAACATAATTTTTTTTTAATCTTTTGCTTACTTTATATTAATGTGAAATTATCAAAACATACAATTGTGTACGCAGGTTTGATCTCACTCATTTGGGTTTATTATGATCCTCGCATTCTTTATTTTCTCTTGCTCTCATTCATCTCACTCTCCTTTGAATTCAAGTACGTCATTGTTGCTCTCTCTATTTTCTCTTGCTCTCTCACTCGTTACTCTATAATAGCATGAGCGATACACATGCACAATAAGATCATTTTAGTAATTTTTCTTGGATTTTAAAAGGTGGGGCACATTCTATTTTGGGTAAAAGGTTTTTCTTAGAAATGACCAACAATTTTGGCCCAAAATGAAATATACCCCACCTCTTAAAATAAATTTTTATTTTATTTACCTTATGTCATATGAACATGAAATCTCGAACTATTGTGCGCTCATTTAAATTAAAATTTTTTCATTTCTATCTATTTTTTCTTACAATTTGTTATCGCTCTTTGTATTGAAAGAAAGCAAATAACAAAAATTATGAAATTGAAAGGAGGGAGCAAGAGGCTAGAGTAACGAAAGCGAGAATCAAGGATCGAGAGTTAATGCACACAAAAAAGTCTTTTCATTATTATTATTATTATTATTATTTTTATTTTTAAAATTAAATAAAAATTTTAGTTGCAAAAGAAATTCGATTTTGAGCAGATGTATCTCAAATTCTCAATTGCCTCTCACGTTTTACGGGGGCTAGTCCAAACTCCATAACCCTCACTCTCATGCCGGAAGACCAGCCCTATGATCTCCATTTCAACGACTAAAACCTTCTCGATTCACGATTCACTGTACAATCACCGGAAAACACCGAAGAAATGAGATTGGGTCCCGAAGAATTTTCGGCGTCGAATGCAATTCGAATAATCAAGGAACAGTGAATCCCAACTTCGTGTATTGGGAGAAATCAAAGTGAGTTCTCGATTCCACATTCTTGAGATTTTTCTTGTGAAAATCGCCATCTATTTCTTCTATTCTCGCTTCAATTATTCGAACTAGTATCTATTTCTGTCCTATATTTGACGAATTCAGAAAAATTCGGCTTGTTTTTCTGGTAGTGGATGGAATCCCCACTGTGGTTGAAGATGGGGATGATGTAGAAAACCCTAGCGGGAAGGATTTTGCGAGAGTAGTTTCTGAAGCTGAAGCAATAGCGACTAATATTTCAGATACGGAGCCATATGTAGGTATGGAGTTTGAATCCGAGGAGTCTGTTAAGGTTTTCTACGATGCATATGCTTCACGCCTTGGTTTTATTATGCGCGTTGATGCATTTCGTCGGTCGATGCGTGATGGTGCGGTTGTTTGGCGTCGACTTGTTTGTAATAAAGAGGGATTTCGTAAGTTGAGGCCGAAAAGAAGTGAAAATAGGAAGCCTCGAGCTGTAACGAGAGAAGGGTGTAAGGCAATGGTTGTTGTAAAGAAAGAAAAAACTGGAAAATGGGTTGTAACGAAATTTGTCAAGGATCACAATCATCCACTGCTTGTTACTCCTGCCAGTGCTCGTCGAAATGTTCTTCTATCCCACACACGGGTAAGGACTACTTTGGTTCACTTTGTGTTCATTTATGCTGAGATGATGTGTTTTTCTAGTTTCTTATTTGCTCTTAAGTTTCACTTTCCGTACTTCTGTTCTGGAATAATATTTGTTTGCTGTAGCCTTTAGCTTTGCCCTTAACAATAGAAACGGTTTGATAGCAGGAAAGGACTTCTAAGGCACCCATTATATAAATACATGTAATATTGTATATTGTAGGACTTCTATCTTTTTCTCTCTCTGATGAAGCCTCAGAGATTGTTCAGGATACTGGTATCAGCCTTTAAAACTTCCACCCCTGAAAATATATCCTTTTTTAAAATACATTTGAAGCATAAGAAAGTGAGGGGAACTCAAAGTATAGAAATTAGATGCTTGTGTTCCTAGTTGTCTATGTTTGGTATGAAGTGATGGAATTGTTGGAATTCAGGTGTAAAATAAGTGTTGAGTTTGTTGGTTAGAATATGAAGATATTTATTTATTGAATGAATTAGGGGAAAGTTTCTTGAAATTCATAAAATTTGGATGATGTAGCCATTAGCCGATAGTCATATTATTTGTATTTTGAACTAAGGCTGGGGGTTTGGAGATGTATAGCCTGTAGCATTCTTCGTCGTTACCAATCACTGTCCCATAATCAAATTTTAGAATATATATCTTGTCGCTTTCTAAATTACTCATCATTGTTAGTGTATATAGGTTTCCACACTGATATTAGGCAAATCTACCAGAGATCCTTTACGTACTCTGTTTCCAAGAAACAACCCCTTTTCTAGGTGCTCTACCTTTGGTCCAATGATATACTTTAGCTTTCCAAGTTCATTCACTTCATTAAGAACAATTAGGTATGCCATTTTATTTGTTGAATTTCTCAGTGTGCCTCTTGTTATGATAAGATCATCCACATCGGCGAATATGACTGACTTTAAGTCTTGAGCTTTCATATATATTAGAATCCACCGGAGGCACTGGTATAGCCACTCTAGAATAGAAAATTTTCAAATTTAATGTACCAAGCTTATAGTGCTTGTTTCTAGTCCTACTTGGTTCTGAGTGTTGCTTCTTGATTTCTCAAACAACTTTGAAGGTCTTGCAGCTCATTTATCATTTAGATACTGGGAAAAGCCAAATAAAACAACGTAATGAGTTTCAATACGAGCAAAGCTAGGTAGGGTACCTATTACTTTCCTTGAAGTTGAAGGTTTAATCTCCAACACATGCCCCTTGAGTTGCACTCAAAACAACCTAATGGGCAAAAAGATGCCCATTTTTGTAGAGGGTCAAATGAAATGCATTAAATCTAGATGGGTGAGAGAAATTCTCAGAGTAGTTAAAAAAAAAAGGCCATTATAAGAAAGACCCCATTTGAGATGCCCAGTTGTCGTTTTTTCTCCTTTTGCTTCACCTGCTGTGAATGATAGTGTACAAGATACATTGTTTATATTTTTTTTCATGTTCTGTTACTATTATTTCAGGATGAGAAAGATGCAAAAATTCGAGAACTTACTGCCGAATTACAGCAAGAACGAAAACGATGTGCAGCGTATCGAGAACAGCTTGCCATGATTTTAAGAGAAATGGAGGAACACTCAAATCATCTATCAAGAAACATAGATGACATTGTTCAAAGTGTAAGAGAAATAGAATAAAAAAACAATTCATTTTCAAACAGCTAACAACAGAATCCATAAAGAAAATATAGTTTTATACATCTGTTTATAGTTTATAGTTCAGTGTTCAGACTTATATTTGTTCATTAGTCCTTCCCTTTTCTCTCCCATTAGTTTGTGACTTGTATGGCTAAGTTTAATAATTTACTGTGGAAAATATAATGTAGACCAAAAAATTAAGGTCCATTTTTTCTCTCCTTCTGCCAAAGAAGAGTCGAACTGCAATCCTCCTTTACCTCTAAATTTTAAAGTAAAATGAATGCATTTATTTTCTGG ATGGTACACAAAGCAAATAACAAAAATTATGAAATTGAAAGGAGGGAGCAAGAGGCTAGAGTAACGAAAGCGAGAATCAAGGATCGAGAAAATGAGATTGGGTCCCGAAGAATTTTCGGCGTCGAATGCAATTCGAATAATCAAGGAACAGTGAATCCCAACTTCGTGTATTGGGAGAAATCAAATATCTATTTCTGTCCTATATTTGACGAATTCAGAAAAATTCGGCTTGTTTTTCTGGTAGTGGATGGAATCCCCACTGTGGTTGAAGATGGGGATGATGTAGAAAACCCTAGCGGGAAGGATTTTGCGAGAGTAGTTTCTGAAGCTGAAGCAATAGCGACTAATATTTCAGATACGGAGCCATATGTAGGTATGGAGTTTGAATCCGAGGAGTCTGTTAAGGTTTTCTACGATGCATATGCTTCACGCCTTGGTTTTATTATGCGCGTTGATGCATTTCGTCGGTCGATGCGTGATGGTGCGGTTGTTTGGCGTCGACTTGTTTGTAATAAAGAGGGATTTCGTAAGTTGAGGCCGAAAAGAAGTGAAAATAGGAAGCCTCGAGCTGTAACGAGAGAAGGGTGTAAGGCAATGGTTGTTGTAAAGAAAGAAAAAACTGGAAAATGGGTTGTAACGAAATTTGTCAAGGATCACAATCATCCACTGCTTGTTACTCCTGCCAGTGCTCGTCGAAATGTTCTTCTATCCCACACACGGGACTTCTATCTTTTTCTCTCTCTGATGAAGCCTCAGAGATTGTTCAGGATACTGAATCCACCGGAGGCACTGGATGAGAAAGATGCAAAAATTCGAGAACTTACTGCCGAATTACAGCAAGAACGAAAACGATGTGCAGCGTATCGAGAACAGCTTGCCATGATTTTAAGAGAAATGGAGGAACACTCAAATCATCTATCAAGAAACATAGATGACATTGTTCAAAGTGTAAGAGAAATAGAATAAAAAAACAATTCATTTTCAAACAGCTAACAACAGAATCCATAAAGAAAATATAGTTTTATACATCTGTTTATAGTTTATAGTTCAGTGTTCAGACTTATATTTGTTCATTAGTCCTTCCCTTTTCTCTCCCATTAGTTTGTGACTTGTATGGCTAAGTTTAATAATTTACTGTGGAAAATATAATGTAGACCAAAAAATTAAGGTCCATTTTTTCTCTCCTTCTGCCAAAGAAGAGTCGAACTGCAATCCTCCTTTACCTCTAAATTTTAAAGTAAAATGAATGCATTTATTTTCTGG ATGGTACACAAAGCAAATAACAAAAATTATGAAATTGAAAGGAGGGAGCAAGAGGCTAGAGTAACGAAAGCGAGAATCAAGGATCGAGAAAATGAGATTGGGTCCCGAAGAATTTTCGGCGTCGAATGCAATTCGAATAATCAAGGAACAGTGAATCCCAACTTCGTGTATTGGGAGAAATCAAATATCTATTTCTGTCCTATATTTGACGAATTCAGAAAAATTCGGCTTGTTTTTCTGGTAGTGGATGGAATCCCCACTGTGGTTGAAGATGGGGATGATGTAGAAAACCCTAGCGGGAAGGATTTTGCGAGAGTAGTTTCTGAAGCTGAAGCAATAGCGACTAATATTTCAGATACGGAGCCATATGTAGGTATGGAGTTTGAATCCGAGGAGTCTGTTAAGGTTTTCTACGATGCATATGCTTCACGCCTTGGTTTTATTATGCGCGTTGATGCATTTCGTCGGTCGATGCGTGATGGTGCGGTTGTTTGGCGTCGACTTGTTTGTAATAAAGAGGGATTTCGTAAGTTGAGGCCGAAAAGAAGTGAAAATAGGAAGCCTCGAGCTGTAACGAGAGAAGGGTGTAAGGCAATGGTTGTTGTAAAGAAAGAAAAAACTGGAAAATGGGTTGTAACGAAATTTGTCAAGGATCACAATCATCCACTGCTTGTTACTCCTGCCAGTGCTCGTCGAAATGTTCTTCTATCCCACACACGGGACTTCTATCTTTTTCTCTCTCTGATGAAGCCTCAGAGATTGTTCAGGATACTGAATCCACCGGAGGCACTGGATGAGAAAGATGCAAAAATTCGAGAACTTACTGCCGAATTACAGCAAGAACGAAAACGATGTGCAGCGTATCGAGAACAGCTTGCCATGATTTTAAGAGAAATGGAGGAACACTCAAATCATCTATCAAGAAACATAGATGACATTGTTCAAAGTGTAAGAGAAATAGAATAA MVHKANNKNYEIERREQEARVTKARIKDRENEIGSRRIFGVECNSNNQGTVNPNFVYWEKSNIYFCPIFDEFRKIRLVFLVVDGIPTVVEDGDDVENPSGKDFARVVSEAEAIATNISDTEPYVGMEFESEESVKVFYDAYASRLGFIMRVDAFRRSMRDGAVVWRRLVCNKEGFRKLRPKRSENRKPRAVTREGCKAMVVVKKEKTGKWVVTKFVKDHNHPLLVTPASARRNVLLSHTRDFYLFLSLMKPQRLFRILNPPEALDEKDAKIRELTAELQQERKRCAAYREQLAMILREMEEHSNHLSRNIDDIVQSVREIE Homology
BLAST of Clc09G08450 vs. NCBI nr
Match: KAG6576034.1 (AUGMIN subunit 3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 449.5 bits (1155), Expect = 2.4e-122 Identity = 234/291 (80.41%), Postives = 248/291 (85.22%), Query Frame = 0
BLAST of Clc09G08450 vs. NCBI nr
Match: KAG7014556.1 (Protein FAR1-RELATED SEQUENCE 5 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 448.0 bits (1151), Expect = 7.0e-122 Identity = 236/315 (74.92%), Postives = 253/315 (80.32%), Query Frame = 0
BLAST of Clc09G08450 vs. NCBI nr
Match: XP_022953886.1 (protein FAR1-RELATED SEQUENCE 5 [Cucurbita moschata]) HSP 1 Score: 398.7 bits (1023), Expect = 4.9e-107 Identity = 206/262 (78.63%), Postives = 224/262 (85.50%), Query Frame = 0
BLAST of Clc09G08450 vs. NCBI nr
Match: XP_023547555.1 (protein FAR1-RELATED SEQUENCE 5 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 378.3 bits (970), Expect = 6.8e-101 Identity = 195/240 (81.25%), Postives = 209/240 (87.08%), Query Frame = 0
BLAST of Clc09G08450 vs. NCBI nr
Match: XP_038897039.1 (protein FAR1-RELATED SEQUENCE 5 isoform X1 [Benincasa hispida] >XP_038897041.1 protein FAR1-RELATED SEQUENCE 5 isoform X1 [Benincasa hispida]) HSP 1 Score: 377.5 bits (968), Expect = 1.2e-100 Identity = 195/240 (81.25%), Postives = 212/240 (88.33%), Query Frame = 0
BLAST of Clc09G08450 vs. ExPASy Swiss-Prot
Match: Q9SZL8 (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=FRS5 PE=1 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 2.5e-29 Identity = 63/117 (53.85%), Postives = 86/117 (73.50%), Query Frame = 0
HSP 2 Score: 43.5 bits (101), Expect = 5.2e-03 Identity = 23/63 (36.51%), Postives = 37/63 (58.73%), Query Frame = 0
BLAST of Clc09G08450 vs. ExPASy Swiss-Prot
Match: Q9M8J3 (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=FRS7 PE=2 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 1.3e-14 Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 0
BLAST of Clc09G08450 vs. ExPASy Swiss-Prot
Match: Q3E7I5 (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana OX=3702 GN=FRS12 PE=2 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 1.7e-14 Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 0
BLAST of Clc09G08450 vs. ExPASy Swiss-Prot
Match: Q9SWG3 (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=FAR1 PE=1 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.2e-12 Identity = 42/124 (33.87%), Postives = 65/124 (52.42%), Query Frame = 0
BLAST of Clc09G08450 vs. ExPASy Swiss-Prot
Match: Q3EBQ3 (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=FRS2 PE=1 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 3.6e-12 Identity = 45/138 (32.61%), Postives = 76/138 (55.07%), Query Frame = 0
BLAST of Clc09G08450 vs. ExPASy TrEMBL
Match: A0A6J1GPB7 (protein FAR1-RELATED SEQUENCE 5 OS=Cucurbita moschata OX=3662 GN=LOC111456290 PE=4 SV=1) HSP 1 Score: 398.7 bits (1023), Expect = 2.4e-107 Identity = 206/262 (78.63%), Postives = 224/262 (85.50%), Query Frame = 0
BLAST of Clc09G08450 vs. ExPASy TrEMBL
Match: A0A1S3BGE3 (protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489731 PE=4 SV=1) HSP 1 Score: 372.5 bits (955), Expect = 1.8e-99 Identity = 196/240 (81.67%), Postives = 210/240 (87.50%), Query Frame = 0
BLAST of Clc09G08450 vs. ExPASy TrEMBL
Match: A0A6J1JVH7 (protein FAR1-RELATED SEQUENCE 5 OS=Cucurbita maxima OX=3661 GN=LOC111487929 PE=4 SV=1) HSP 1 Score: 370.9 bits (951), Expect = 5.3e-99 Identity = 190/240 (79.17%), Postives = 207/240 (86.25%), Query Frame = 0
BLAST of Clc09G08450 vs. ExPASy TrEMBL
Match: A0A0A0KA59 (FAR1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G372900 PE=4 SV=1) HSP 1 Score: 361.7 bits (927), Expect = 3.2e-96 Identity = 191/240 (79.58%), Postives = 207/240 (86.25%), Query Frame = 0
BLAST of Clc09G08450 vs. ExPASy TrEMBL
Match: A0A1S3BGZ2 (protein FAR1-RELATED SEQUENCE 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489731 PE=4 SV=1) HSP 1 Score: 312.0 bits (798), Expect = 2.9e-81 Identity = 163/196 (83.16%), Postives = 171/196 (87.24%), Query Frame = 0
BLAST of Clc09G08450 vs. TAIR 10
Match: AT3G07500.1 (Far-red impaired responsive (FAR1) family protein ) HSP 1 Score: 249.6 bits (636), Expect = 3.4e-66 Identity = 129/229 (56.33%), Postives = 164/229 (71.62%), Query Frame = 0
BLAST of Clc09G08450 vs. TAIR 10
Match: AT2G43280.1 (Far-red impaired responsive (FAR1) family protein ) HSP 1 Score: 171.0 bits (432), Expect = 1.5e-42 Identity = 93/202 (46.04%), Postives = 131/202 (64.85%), Query Frame = 0
BLAST of Clc09G08450 vs. TAIR 10
Match: AT3G59470.1 (Far-red impaired responsive (FAR1) family protein ) HSP 1 Score: 154.1 bits (388), Expect = 1.9e-37 Identity = 92/242 (38.02%), Postives = 133/242 (54.96%), Query Frame = 0
BLAST of Clc09G08450 vs. TAIR 10
Match: AT3G59470.2 (Far-red impaired responsive (FAR1) family protein ) HSP 1 Score: 154.1 bits (388), Expect = 1.9e-37 Identity = 92/242 (38.02%), Postives = 133/242 (54.96%), Query Frame = 0
BLAST of Clc09G08450 vs. TAIR 10
Match: AT4G12850.1 (Far-red impaired responsive (FAR1) family protein ) HSP 1 Score: 134.0 bits (336), Expect = 2.1e-31 Identity = 75/201 (37.31%), Postives = 115/201 (57.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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