Clc09G12243 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G12243
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
LocationClcChr09: 10997097 .. 11000989 (-)
RNA-Seq ExpressionClc09G12243
SyntenyClc09G12243
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGCAATTGAGCGTTTGACGTCCGTCGCCCCTCTACCGTCGTTCGCGTGTAGGAGTCACGCCGAATCTCTCTCTCCCATTTTGCGTTGTCCGACGTCCATTTGTCACTGCTTTTCGCCGGTCGTTGCCACTAGTCCAGCATTCCTTCGTCTTGGGTTTGGCTCAAATCCATAGCATGGTGAGTTTTGCCCAACTGTAGCATAGTGAGTTTTGCCCAATTTTCTGTGGTTCTGATTGAAGAATGGGTTGTTTTTGCGTTGTGTGCAAATTTACTAATTCATGCTTTTGCCTGTAGATTAAATTGGCTGTGTTGGTTGGTGGGTGGTCCAACCAAGCTCGGGTGTTTTCGATGACTTGTAGTAAATAACTAAATTGTTTTAAAGAGTTTTCTAGGATAATTAGACTAATTATGATGTTGGAATTTGGGTTTTTTAACTCCTAAATTGTTGAGTGCTAGTAGGTTGGACTTACTATTCGAAGTTGGGAAAATTGGAACCTAGTTACACTGTCGATAAGGCCATTGGTGTAATTGTTAAGTAATTGTTTTGGCTTTTATGCCTAAAAGTTTACTGGGTTTGTATCCTAGGTTTTAATTCAAGGTCCTTGGGTACAATTGTTGGGTAAACTTGTTGGTTAGGAAATCTTTTGGACTCATTCATAAAGTAAGGAATTTATGTTTTGAGCATCTTAGGTTTATTGTATGTGTTGGGTTTACTGTATGTGTTCGGTTTACTGTATGGAATGGCGGTAATTGTTATTTTACTTATCGAGCCTTGTACTCTCTATTGACTGTGAACCCGTGGGTTCACTGACTATGATTATGACTGGGTGTCCCTCAAGATCATCACCTATGCTTATGACTGTGACCTTCGTGTTCATTACCTATGATTATGTTTATGCCTATGTCTATGTTTTGTACACTGTGCTTATGATACGAGGATAACAATTTCACCTAGTGGGCCCGATAGTGGGTCACTTATTGAGTACCTTAATACTCATGCTTTCCTTTGACACATTTTTCAAGTAAGGACCGGGACAAACAGACGAATGATAAGAGGAATCACGAATGATAAGAGGAATTTGTGACTGCGTCATGTGACTAGTCATCGCTTCCACATTTTATGCTCCTGTTTTCTCTTTCTAGAGTATAGGGTCTAGTTGTCAATTGACAATTGTTTATTTATTTATTTACTTATTTCATTTAATTTATTATTAACTTTGAATTTATGTTTTAAGGGCCCCAATAAAAACTGATTTTTATGTAATTTGATTTAATAATTTATTCAATTTATTTTTATTTTATTTTTATATTAAAAATGTTATTATTGCTTGTGTAACGGCCCGACTTACCCAACCTAATCGTTACTCAATGCATGTAAAATTCAAGAAAGACACTATGCTGACTAGTAAAGAAGAAACAATGCTTTTCATGGAGAATTCTACTTTATTAATTCAAGAAAACAATGTAAAACATATATAAAAGAAATTTTGGTTCGGGGTACCCCTAATAAAATCATTAAAATTCATGAACAGAAATCCACATATCGAATAAAAGATGAGTCTCAAAACAAACATTGGACAATTGGACAAAACTTAGTAAAACATGAAATGCTAAGCGGAAGCTACTACGGGTCCCGTGATGCCATCAAGGATTCTTCTTGTCATTCGCCAGCACGTTCTTTCCCTTACCTGAAAAACATATAAGATAAAAGGATGAGTAATTATATTACTCAGTAAGTGACCCCACTATCTGGAGTCGGGCTAGGCACCTAATTCCTTTGAGTGCGTCAAACATAAGGCATACTATCTAACATACTTTCATAGGGAAATGGTTATACTCGCCCTACAGCTGGTTATGGATGTCCACAAACCTCTAGAGCCCCGAAGGAAACTCTTACCTCTGGTGATCCCGAAGGAACACAAACCTCTAATATACTCGAAGGAGCACAACCTCTGGTGAACCCGAAGGAACACAACCTCTGGTGAACCCGAAGGAACACAACCTCCTGTGAACCCGAAGGAACACAACCTCTAGTGAACCCGAAGGTACACACCCTTTAGTGATCCCGAAGGAACACAACCTCCTGTGGACACCCAACCAATATAGGGGAGGCACCTCTACTCATGAAACATAAACAATAAAATTCATACTCATTCCATTCCATGGGTTCATACATTAAAATATTATACTGTTCATAACATATCATGGCATAGGTTTATGCATTCTTAGGCACATACAACTTTTAGACATGAGAATCTCATACAAGCATGCTATATCATAAAGGCTTTAAAAATTTTCTACTTCATGGCAACTAAACGTATGGCCCGAAGGCGGTTCAGGTAGTAAGATCACTTACTTGAGGATCGATCCATAAAATAACCACACTGCCCCTCTTGTAACAACTCTTGAATAAATTCCCCCAACTTAAGTTAGTCTACAAGTCTAGTCTATCATAAGCAACCTAAAAATTTGTTCGAGAGAGTCCTTACCTGAACGTGATCCAACTCGTAGCTTCCTCCGATCCTACGAACTAAAACAATCGCCGATCACCTATTAAGATGTACTAATTAATTCGAAATTCCCAAATATCCACTAAAAATATGCAACTAACCCACTCGGTTTGAGATACTCACTTAGGGGTACTGGTCTGGTCGGACGAGAAAGGAACCGCTGCTGAGAGCTAAATTCTGAGCGAGAGCGAGACCCGAGCGAGAAGCGAGATTCGAGCGAGAGAGCGAGAGCCGAGAGAGCGGGAGGCAGCGATACAGCGAGAGTCCGACAGCTTGCGGCGGTACCGGGCGCGGGAGAGCGTGAGTCGAGCGGGAGAGCGAGAGGCAGCGATACAGCGAGAGCCCGAGAGCATGGGGGCGATTTCCGGCGCGGGAGAGCGTGAGGCGAGAGGGAAAACCTGAGCGCGGGAGAGCGGGAGTCAGCGAGAGCGAGAGGCCAACAGCGACACTCAGGGCATGAATCTAGCGATACCCGACGTGAAACAACGACACTCTAAGCGTGAAGCCTCCGGGGAACGCACGGGAACTGAAGGAGAGCGAGAGAGAGGGAGATGGTGGAGGCAAAGAAGAGCGGAAGCGGCGGCGGCGGCGGCGGCCAACGGGAAGGAAAAGAGGAGAGAGAGGCGGCGGAGAGAGAGAGAGATGACTTTTTTTTTTCCTTTTCTTTTTGACTGCACGGAAAACGAGGAGGGTGGGTTTAAACTAAACCCTAATCCCTCTCCCTCCTTAAACCATTAATTCCAACTTTTCCCTTTTTGTTTTTTTCAACCAAATAAAGAAAATATCCTTTATTCAACCCCACTCCTACCAAATTTATCTATTTTATTCTATTTGCCCCAAAAATAAAATGAGAATAAAATTATCCTCTACCCAATCCCAACATTTTCCTTAACTCCACCTAAGATTCTCTAATCACCATAAATGCTAATTTTGAAACTTTCTTACTTAACCTAAATAAATACATAAATGCATATGAATAATTATAATTTCCTTTTTATGCATAATGACTTAATTTAATTTATTAGGAGAATTTACCTCAAGTATTTGGGGTCATTACAGCTTGAGTTTTAAAACCAATAGGAGATTTTGGTTTATTATTAGGGATTTTAGGTCTTTATTGGATAACGGGGAGTTTTGAATTTTGGGATTTATTGAAAATATTCAATAACTTGATTGATAATAATGAGGTGAATTTCTTATTCGTTACTTTATGCGCTGTCCTATTATTTACAGGTGCAGTTTCTAAATCTGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATTTCAGCTCTTATACATGCTGCTACGATGGTAGCAGTGAGAATTTTCTTACAAAATTACGCATGCATAGAGTAG

mRNA sequence

ATGCCAGCAATTGAGCGTTTGACGTCCGTCGCCCCTCTACCGTCGTTCGCGTGTAGGAGTCACGCCGAATCTCTCTCTCCCATTTTGCGTTGTCCGACGTCCATTTGTCACTGCTTTTCGCCGGTCGTTGCCACTAGTGCAGTTTCTAAATCTGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATTTCAGCTCTTATACATGCTGCTACGATGGTAGCAGTGAGAATTTTCTTACAAAATTACGCATGCATAGAGTAG

Coding sequence (CDS)

ATGCCAGCAATTGAGCGTTTGACGTCCGTCGCCCCTCTACCGTCGTTCGCGTGTAGGAGTCACGCCGAATCTCTCTCTCCCATTTTGCGTTGTCCGACGTCCATTTGTCACTGCTTTTCGCCGGTCGTTGCCACTAGTGCAGTTTCTAAATCTGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATTTCAGCTCTTATACATGCTGCTACGATGGTAGCAGTGAGAATTTTCTTACAAAATTACGCATGCATAGAGTAG

Protein sequence

MPAIERLTSVAPLPSFACRSHAESLSPILRCPTSICHCFSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFLQNYACIE
Homology
[Close]
BLAST of Clc09G12243 vs. NCBI nr
Match: WP_017299734.1 (NAD(P)H-quinone oxidoreductase subunit 5 [Nodosilinea nodulosa])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 32  PTSICHCFSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           P SI   F+ +V    V+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  +FL
Sbjct: 225 PASIAAVFAILVFLGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFL 279

[Close]
BLAST of Clc09G12243 vs. NCBI nr
Match: WP_194055775.1 (NAD(P)H-quinone oxidoreductase subunit 5 [Nodosilinea sp. LEGE 06152] >MBE9158532.1 NAD(P)H-quinone oxidoreductase subunit 5 [Nodosilinea sp. LEGE 06152])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 0 

Query: 32  PTSICHCFSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           P SI   F+ +V    V+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  +FL
Sbjct: 225 PASIAAVFAILVFMGPVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGVFL 279

[Close]
BLAST of Clc09G12243 vs. NCBI nr
Match: YP_009570404.1 (NADH-plastoquinone oxidoreductase subunit 5 [Anredera cordifolia] >QBC66427.1 NADH-plastoquinone oxidoreductase subunit 5 [Anredera cordifolia] >QBC66512.1 NADH-plastoquinone oxidoreductase subunit 5 [Anredera cordifolia] >QSQ87027.1 NADH-plastoquinone oxidoreductase subunit 5 [Anredera cordifolia])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 0 

Query: 45  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           T AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Sbjct: 237 TGAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFL 278

[Close]
BLAST of Clc09G12243 vs. NCBI nr
Match: AFB74228.1 (NADH dehydrogenase subunit 5, partial [Anredera baselloides])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 0 

Query: 45  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           T AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Sbjct: 237 TGAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFL 278

[Close]
BLAST of Clc09G12243 vs. NCBI nr
Match: AAN64402.1 (NADH dehydrogenase subunit F, partial [Vancouveria hexandra])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 39  FSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           FS ++   AV+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Sbjct: 229 FSSLLFVGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFL 276

[Close]
BLAST of Clc09G12243 vs. ExPASy Swiss-Prot
Match: Q06R83 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Jasminum nudiflorum OX=126431 GN=ndhF PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-14
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0 

Query: 45  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           T AV+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Sbjct: 235 TGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFL 276

[Close]
BLAST of Clc09G12243 vs. ExPASy Swiss-Prot
Match: Q9TLA3 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Ligustrum vulgare OX=13597 GN=ndhF PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-14
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 0 

Query: 45  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           T AV+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Sbjct: 235 TGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFL 276

[Close]
BLAST of Clc09G12243 vs. ExPASy Swiss-Prot
Match: Q32126 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Dampiera diversifolia OX=41565 GN=ndhF PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-14
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0 

Query: 45  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           T A++KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Sbjct: 235 TGAIAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFL 276

[Close]
BLAST of Clc09G12243 vs. ExPASy Swiss-Prot
Match: Q2MIE0 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Solanum bulbocastanum OX=147425 GN=ndhF PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.2e-14
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 0 

Query: 47  AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Sbjct: 237 AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFL 276

[Close]
BLAST of Clc09G12243 vs. ExPASy Swiss-Prot
Match: A0A382 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Coffea arabica OX=13443 GN=ndhF PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.4e-14
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 42  VVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           +V   AV+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Sbjct: 232 LVFAGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFL 276

[Close]
BLAST of Clc09G12243 vs. ExPASy TrEMBL
Match: A0A411JMV2 (NAD(P)H dehydrogenase subunit 5 OS=Anredera cordifolia OX=46150 GN=ndhF PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.0e-12
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 0 

Query: 45  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           T AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Sbjct: 237 TGAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFL 278

[Close]
BLAST of Clc09G12243 vs. ExPASy TrEMBL
Match: H6T8N2 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment) OS=Anredera baselloides OX=1038467 GN=ndhF PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.0e-12
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 0 

Query: 45  TSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           T AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Sbjct: 237 TGAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFL 278

[Close]
BLAST of Clc09G12243 vs. ExPASy TrEMBL
Match: A0A3S8V6I6 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Vancouveria planipetala OX=304163 GN=ndhF PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.0e-12
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 39  FSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           FS ++   AV+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Sbjct: 229 FSSLLFVGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFL 276

[Close]
BLAST of Clc09G12243 vs. ExPASy TrEMBL
Match: Q8HTM3 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment) OS=Vancouveria hexandra OX=46959 GN=ndhF PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.0e-12
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 39  FSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           FS ++   AV+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Sbjct: 229 FSSLLFVGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFL 276

[Close]
BLAST of Clc09G12243 vs. ExPASy TrEMBL
Match: A0A4D6E9L9 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Vancouveria hexandra OX=46959 GN=ndhF PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.0e-12
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0 

Query: 39  FSPVVATSAVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           FS ++   AV+KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Sbjct: 229 FSSLLFVGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFL 276

[Close]
BLAST of Clc09G12243 vs. TAIR 10
Match: ATCG01010.1 (NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein )

HSP 1 Score: 74.7 bits (182), Expect = 4.3e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 48  VSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           ++KSAQFPLHVWLPDAMEGPTPISALIHAATMVA  IFL
Sbjct: 238 IAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFL 276

[Close]
BLAST of Clc09G12243 vs. TAIR 10
Match: ATMG00060.1 (NADH dehydrogenase subunit 5C )

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-09
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0 

Query: 47  AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           AV KSAQ   H W PDAMEGPTP+SA IHAATMV   +F+
Sbjct: 229 AVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFM 268

[Close]
BLAST of Clc09G12243 vs. TAIR 10
Match: ATMG00513.1 (NADH dehydrogenase 5A )

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-09
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0 

Query: 47  AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           AV KSAQ   H W PDAMEGPTP+SA IHAATMV   +F+
Sbjct: 229 AVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFM 268

[Close]
BLAST of Clc09G12243 vs. TAIR 10
Match: ATMG00665.1 (NADH dehydrogenase 5B )

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-09
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0 

Query: 47  AVSKSAQFPLHVWLPDAMEGPTPISALIHAATMVAVRIFL 87
           AV KSAQ   H W PDAMEGPTP+SA IHAATMV   +F+
Sbjct: 229 AVGKSAQIGSHTWSPDAMEGPTPVSASIHAATMVTAGVFM 268

The following BLAST results are available for this feature:
BLAST of Clc09G12243 vs. NCBI nr
Match NameE-valueIdentityDescription
WP_017299734.11.4e-1172.73NAD(P)H-quinone oxidoreductase subunit 5 [Nodosilinea nodulosa][more]
WP_194055775.11.4e-1172.73NAD(P)H-quinone oxidoreductase subunit 5 [Nodosilinea sp. LEGE 06152] >MBE915853... [more]
YP_009570404.11.4e-1192.86NADH-plastoquinone oxidoreductase subunit 5 [Anredera cordifolia] >QBC66427.1 NA... [more]
AFB74228.11.4e-1192.86NADH dehydrogenase subunit 5, partial [Anredera baselloides][more]
AAN64402.11.4e-1181.25NADH dehydrogenase subunit F, partial [Vancouveria hexandra][more]
BLAST of Clc09G12243 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q06R834.2e-1490.48NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Jasminum nudiflorum O... [more]
Q9TLA34.2e-1490.48NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Ligustrum vulgare OX=... [more]
Q321265.5e-1488.10NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Dampiera diversifolia... [more]
Q2MIE07.2e-1495.00NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Solanum bulbocastanum... [more]
A0A3829.4e-1484.44NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Coffea arabica OX=134... [more]
BLAST of Clc09G12243 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A411JMV27.0e-1292.86NAD(P)H dehydrogenase subunit 5 OS=Anredera cordifolia OX=46150 GN=ndhF PE=3 SV=... [more]
H6T8N27.0e-1292.86NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment) OS=Anredera b... [more]
A0A3S8V6I67.0e-1281.25NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Vancouveria planipeta... [more]
Q8HTM37.0e-1281.25NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment) OS=Vancouveri... [more]
A0A4D6E9L97.0e-1281.25NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Vancouveria hexandra ... [more]
BLAST of Clc09G12243 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG01010.14.3e-1489.74NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein [more]
ATMG00060.12.5e-0967.50NADH dehydrogenase subunit 5C [more]
ATMG00513.12.5e-0967.50NADH dehydrogenase 5A [more]
ATMG00665.12.5e-0967.50NADH dehydrogenase 5B [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01434NADHDHGNASE5coord: 46..67
score: 77.55
coord: 68..93
score: 52.31
NoneNo IPR availablePANTHERPTHR42829:SF2NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5coord: 42..86
NoneNo IPR availablePANTHERPTHR42829NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5coord: 42..86
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, membrane subunitPFAMPF00361Proton_antipo_Mcoord: 43..86
e-value: 3.2E-13
score: 49.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G12243.1Clc09G12243.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042773 ATP synthesis coupled electron transport
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0048038 quinone binding