Sed0020223 (gene) Chayote v1

Overview


Name	Sed0020223
Type	gene
Organism	Sechium edule (Chayote v1)
Description	30S ribosomal protein S1
Location	LG03: 3104928 .. 3108668 (+)
RNA-Seq Expression	Sed0020223
Synteny	Sed0020223

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATCCACAGCCGAAACCTCTTTTTCGTCTTTCAATGCAATTTCAGTACTCTGCGACGAAGCCAAGCTCAGCTCATGAGGTGGGCAGCCAAAAGAAGATGCTAATGCTTGCGGGAATTCATCCCTGTAAGTATCTTTTCGTTCCCAATTCGTCATTCGAGCCTCGAAATTTCTTAGTTTCAATCAATTCCGCAAGAGCATTTCTCACCGTCCATCCACGAGTCTCTAATTCCAAGTTCTGTAATAGTTCTAATTGGTTTAATAACTGTAATGAATCGAAGAAGTTTCCGTTTCGGGAAAGAAATAGCGAAGTGTTTTGCTCTAGGAATGATGTTTTTGGTCATTTATCGAACACCCAGTTGCCGGATAAGCCTAGAGAGGATGGAATTCAAGAGATTGATGAACTTGGTTTGCTAAATAAGCCTTCTCCTGCTCCTGTTGGTAATGGGGTTTCATCAGAAATTGATAAAGTGGACGAGAATGAGGCATTGGCACCATTTATGAAGTTTTTCAAAACTAAAGATTCTGTCGAAGGACAGGAAGAGGAGGAAAAGGTGTTTCAAGCTTTTGAAGAGAAAATTGATGGAGATGAACCAACTGAGAAAGCTGTTAAGTTGAATGTTGAGTACTACGAGCCCAAACCTGGAGATGTTGTGGTTGGTGTGGTCGTCTCTGGTAACGAAAACAAGCTCGATGTCAACGTGGGGGCGGATTTATTGGGGACGATGTTGACGAAAGAAGTGCTTCCTTTGTATGACAAAGAGATGGAATTCTTGATGTGTGATCTTGTCAAGGATGCTGAAACTTTTATGGTGAATGGGAAGATGGGGTTGGTGAAATATGACGATGCTGTTAGCCCTGGACCGGGGCCAGGCCGACCTGTCGTCGAAACTGGCACGATTTTGTTTGCTGAGGTTTTGGGAAGAACACTTAGTGGTCGCCCGTTGCTCTCTACTAGAAGGTTGTTTCGGCGGTTAGCTTGGCATCGAGTGAGGCAGGTTCTTTTCTTGATTAGCTTCCCTGTTTATAAAAAAAATTCATCTTAGGGGACAGAATGAAGAGTGCATAGTTGTGGTTTGCTTCTTTAACAGATAAAAGGACTCAATGAGCCAATTGAAGTTCAAATATCAGAGTGGAATACTGGAGGGCTTCTTACAAGAATTGAGGTTGTCTGTGCATAGTAATTCATTTGGTTTTTAGTTTGTACGTTTGTTGGGATGGCTCATGTTCATTTAGGTTTTCAACATTTGTTATGCAGGGTTTGCGAGCATTTCTTCCGAAAACTGAGTTATTGAACAGAGTAAATAACTTCACAGAGTTAAAAGAAAATGTGAGTAGGTTTTGGTTTCTTTGATTTTTGAGCTGCTATATGCATTACCCCATCGTGTAAATAGCATCTTCCTGTTCCATTGAAAATTATTATTGCCACTAGACTACGAACTTTATGTTCTATAGACATTGTTGTTGTTTTTTTTTTTTCATGAAAATGCTGCTGTACTTGTTTGATATGTTTTGTTTTTTCTCCCTTTAGACTTCACTTTGTCCCGGTGTCCACAAATTGTAGTAAAATCTCTTCACTACTGCTTTTCACTAGTTGCATTGCAAATTTGCCGACAATCTTAAAACGCTCGATTCCATTAAAACCTCATATTTTTATACGTTGCTTTTAATTGGACAGAACATAGGACTTATTTTAGATCATAAGATTCTCTAGTATGGAAGTCCGTGACTGTTAATTTCACTTTGAACTTTTGCCTTTTGCAAGCTTTTGACATCAAAGCTTGCAAAAGCATGGAAGGAGGCAAATTATGATGCTGACTAGGTGGGAAAAAAAACCCTGTAAATAGTGGGCTTACACTTTCTCTTCTTCATCTTTTTCACTCGTTCGACGAAGAAATGTCACTGCCTTGCTGTAAATTGCATGGCCATGATTGTTGTGATATTATTCCAGAGTGGATCCATGAAACTTACGACTACGTTATATGCACATGCACGTGGAACCGAGAATTGGCTTCACCATTTACTATAGTCGATATTGTAGCACGAGTCTTGTTCATCTCAGATATGCATCCTGTTCTTCATCATGAATACTCAAATCACTTCAAATTGGCGCCTCCTGCATCAGAGACCTCTGTGCCTTGTACTGCATACCTTGCAATGTTCATCTTACCGAACACTCTTTGGTTTGCTGCAACATTTGCTTTCACATAATTGTACAAAAGGAAAGGTATGGCTGATCATAGCTCATTGTATTGGAATCGTATTGGGCAGGTGGGACGTCGGATCTTTGTGCAAATCACACGAATAGATGAAGACAAGAATGATTTGATACTAAGTGAGAGACAAGCTTGGGTCAGTTTTTCTACTTTATTTTTCAATTTTTTCTCCTTAAGGCATTGTATAAGTACATCGATACATACCTGATTTTGTGTATTTAATTCAGGAAATGTTATGCCTACGTGAGGGAACGCTTCTAGAAGGAACTGTGAAGAAAATATTTCCGTACGGAGCTCAAGTTAGAATTGGCGACACAAACAGAAAGTGAGTTTCACTTTCAATACACATTGCCTACAAACTTGTCCTGATTTATTTAATCTTACTAGAGTTTGAAATAATTTTGTTAAGAAAAATTTAGTGATGAGTGTACCTTTTCTTTCTTGTTACGAAACTGGCCAAACTCAACCAAGATAATACCGCATAAGAAACACGACGCGACAAGAAAAACCAATACCTACCAAAAAAGTAGTCATGCAATCACACGATGCCAACATTTGTTCAAGGAACACCATCTAGTTATTACTTTCTATAAAATAGCCAGAAATTGTTTCTGCTTTGACTGCGCATAACATATTCTGTTGTTCTTATTTAATTTCTGAGAAGTATTGATACATCCATCTGAATGTTCCTCAGTGGATTACTCCATGTTTCGAACATCACCCGTGCCCGAGTTACCTCGGTGAGTGACTTACTTACAGTGGGTGAAAAGGTCAAAGTTTTAGTTGTGAAGTCAATGTTTCCTGACAAGATATCTTTAAGGTAATTAATTCATGACCATGTTACTCAATTTAACAGTCATGGTTGGTGCATCTTGTTACTTATAAATTTGCTTGTATTTACAGTATAGCAGACCTTGAAAGTGAGCCTGGCCTCTTTATATCAAACAAAGAGGTAAACCACCAATCTTCCTCACCATTGAACTTCATTTTATTCGATTTCAACCGACTTATTTTTCCCTTTTCCATTATCAGAAAGTATTTTCCGAGGCCAAGGTCATGGCGAAGAAGTACAGGCAAAAGCTACCAGCAGTCGAAGGCATTCCTAGACCTGAGCGTGCTGCAATTACAGGTCTTCCGTTTGAGAACGAATCGAGCATATGCGCAAATTGGAAATGGTTTAAATTTGAAAGGTAGTTGTCGAGTTAAACAAACTCTCTTTCCTGCTTCCCAACCACGCCATACTCCATGGGAAAGAATTGATTATTTAACTGAGCGAGAGTTCTCTTAGCTCTTCGAATGGTTTTCGGTTATCGTTAACCGGTTTTGTTTGATTACGAGGAATGATAGAATCCAAGGAATGGGAAGTGTAAAAGATCAAATTTTAACATGGTAAGCTTGAATTTTGTTTGTTGTCGTTGCCTCACTTTTACTAGGCCTAATTTTGTAGAGTAAAAGAGAATTATGGGTTGTAACTTAACCCAGATGGTTTCTTTTTGCATCTTGTTCATCTTCATGTATAAAGAGG

mRNA sequence

CTCATCCACAGCCGAAACCTCTTTTTCGTCTTTCAATGCAATTTCAGTACTCTGCGACGAAGCCAAGCTCAGCTCATGAGGTGGGCAGCCAAAAGAAGATGCTAATGCTTGCGGGAATTCATCCCTGTAAGTATCTTTTCGTTCCCAATTCGTCATTCGAGCCTCGAAATTTCTTAGTTTCAATCAATTCCGCAAGAGCATTTCTCACCGTCCATCCACGAGTCTCTAATTCCAAGTTCTGTAATAGTTCTAATTGGTTTAATAACTGTAATGAATCGAAGAAGTTTCCGTTTCGGGAAAGAAATAGCGAAGTGTTTTGCTCTAGGAATGATGTTTTTGGTCATTTATCGAACACCCAGTTGCCGGATAAGCCTAGAGAGGATGGAATTCAAGAGATTGATGAACTTGGTTTGCTAAATAAGCCTTCTCCTGCTCCTGTTGGTAATGGGGTTTCATCAGAAATTGATAAAGTGGACGAGAATGAGGCATTGGCACCATTTATGAAGTTTTTCAAAACTAAAGATTCTGTCGAAGGACAGGAAGAGGAGGAAAAGGTGTTTCAAGCTTTTGAAGAGAAAATTGATGGAGATGAACCAACTGAGAAAGCTGTTAAGTTGAATGTTGAGTACTACGAGCCCAAACCTGGAGATGTTGTGGTTGGTGTGGTCGTCTCTGGTAACGAAAACAAGCTCGATGTCAACGTGGGGGCGGATTTATTGGGGACGATGTTGACGAAAGAAGTGCTTCCTTTGTATGACAAAGAGATGGAATTCTTGATGTGTGATCTTGTCAAGGATGCTGAAACTTTTATGGTGAATGGGAAGATGGGGTTGGTGAAATATGACGATGCTGTTAGCCCTGGACCGGGGCCAGGCCGACCTGTCGTCGAAACTGGCACGATTTTGTTTGCTGAGGTTTTGGGAAGAACACTTAGTGGTCGCCCGTTGCTCTCTACTAGAAGGTTGTTTCGGCGGTTAGCTTGGCATCGAGTGAGGCAGATAAAAGGACTCAATGAGCCAATTGAAGTTCAAATATCAGAGTGGAATACTGGAGGGCTTCTTACAAGAATTGAGGGTTTGCGAGCATTTCTTCCGAAAACTGAGTTATTGAACAGAGTAAATAACTTCACAGAGTTAAAAGAAAATGTGGGACGTCGGATCTTTGTGCAAATCACACGAATAGATGAAGACAAGAATGATTTGATACTAAGTGAGAGACAAGCTTGGGAAATGTTATGCCTACGTGAGGGAACGCTTCTAGAAGGAACTGTGAAGAAAATATTTCCGTACGGAGCTCAAGTTAGAATTGGCGACACAAACAGAAATGGATTACTCCATGTTTCGAACATCACCCGTGCCCGAGTTACCTCGGTGAGTGACTTACTTACAGTGGGTGAAAAGGTCAAAGTTTTAGTTGTGAAGTCAATGTTTCCTGACAAGATATCTTTAAGTATAGCAGACCTTGAAAGTGAGCCTGGCCTCTTTATATCAAACAAAGAGAAAGTATTTTCCGAGGCCAAGGTCATGGCGAAGAAGTACAGGCAAAAGCTACCAGCAGTCGAAGGCATTCCTAGACCTGAGCGTGCTGCAATTACAGGTCTTCCGTTTGAGAACGAATCGAGCATATGCGCAAATTGGAAATGGTTTAAATTTGAAAGGTAGTTGTCGAGTTAAACAAACTCTCTTTCCTGCTTCCCAACCACGCCATACTCCATGGGAAAGAATTGATTATTTAACTGAGCGAGAGTTCTCTTAGCTCTTCGAATGGTTTTCGGTTATCGTTAACCGGTTTTGTTTGATTACGAGGAATGATAGAATCCAAGGAATGGGAAGTGTAAAAGATCAAATTTTAACATGGTAAGCTTGAATTTTGTTTGTTGTCGTTGCCTCACTTTTACTAGGCCTAATTTTGTAGAGTAAAAGAGAATTATGGGTTGTAACTTAACCCAGATGGTTTCTTTTTGCATCTTGTTCATCTTCATGTATAAAGAGG

Coding sequence (CDS)

ATGCAATTTCAGTACTCTGCGACGAAGCCAAGCTCAGCTCATGAGGTGGGCAGCCAAAAGAAGATGCTAATGCTTGCGGGAATTCATCCCTGTAAGTATCTTTTCGTTCCCAATTCGTCATTCGAGCCTCGAAATTTCTTAGTTTCAATCAATTCCGCAAGAGCATTTCTCACCGTCCATCCACGAGTCTCTAATTCCAAGTTCTGTAATAGTTCTAATTGGTTTAATAACTGTAATGAATCGAAGAAGTTTCCGTTTCGGGAAAGAAATAGCGAAGTGTTTTGCTCTAGGAATGATGTTTTTGGTCATTTATCGAACACCCAGTTGCCGGATAAGCCTAGAGAGGATGGAATTCAAGAGATTGATGAACTTGGTTTGCTAAATAAGCCTTCTCCTGCTCCTGTTGGTAATGGGGTTTCATCAGAAATTGATAAAGTGGACGAGAATGAGGCATTGGCACCATTTATGAAGTTTTTCAAAACTAAAGATTCTGTCGAAGGACAGGAAGAGGAGGAAAAGGTGTTTCAAGCTTTTGAAGAGAAAATTGATGGAGATGAACCAACTGAGAAAGCTGTTAAGTTGAATGTTGAGTACTACGAGCCCAAACCTGGAGATGTTGTGGTTGGTGTGGTCGTCTCTGGTAACGAAAACAAGCTCGATGTCAACGTGGGGGCGGATTTATTGGGGACGATGTTGACGAAAGAAGTGCTTCCTTTGTATGACAAAGAGATGGAATTCTTGATGTGTGATCTTGTCAAGGATGCTGAAACTTTTATGGTGAATGGGAAGATGGGGTTGGTGAAATATGACGATGCTGTTAGCCCTGGACCGGGGCCAGGCCGACCTGTCGTCGAAACTGGCACGATTTTGTTTGCTGAGGTTTTGGGAAGAACACTTAGTGGTCGCCCGTTGCTCTCTACTAGAAGGTTGTTTCGGCGGTTAGCTTGGCATCGAGTGAGGCAGATAAAAGGACTCAATGAGCCAATTGAAGTTCAAATATCAGAGTGGAATACTGGAGGGCTTCTTACAAGAATTGAGGGTTTGCGAGCATTTCTTCCGAAAACTGAGTTATTGAACAGAGTAAATAACTTCACAGAGTTAAAAGAAAATGTGGGACGTCGGATCTTTGTGCAAATCACACGAATAGATGAAGACAAGAATGATTTGATACTAAGTGAGAGACAAGCTTGGGAAATGTTATGCCTACGTGAGGGAACGCTTCTAGAAGGAACTGTGAAGAAAATATTTCCGTACGGAGCTCAAGTTAGAATTGGCGACACAAACAGAAATGGATTACTCCATGTTTCGAACATCACCCGTGCCCGAGTTACCTCGGTGAGTGACTTACTTACAGTGGGTGAAAAGGTCAAAGTTTTAGTTGTGAAGTCAATGTTTCCTGACAAGATATCTTTAAGTATAGCAGACCTTGAAAGTGAGCCTGGCCTCTTTATATCAAACAAAGAGAAAGTATTTTCCGAGGCCAAGGTCATGGCGAAGAAGTACAGGCAAAAGCTACCAGCAGTCGAAGGCATTCCTAGACCTGAGCGTGCTGCAATTACAGGTCTTCCGTTTGAGAACGAATCGAGCATATGCGCAAATTGGAAATGGTTTAAATTTGAAAGGTAG

Protein sequence

MQFQYSATKPSSAHEVGSQKKMLMLAGIHPCKYLFVPNSSFEPRNFLVSINSARAFLTVHPRVSNSKFCNSSNWFNNCNESKKFPFRERNSEVFCSRNDVFGHLSNTQLPDKPREDGIQEIDELGLLNKPSPAPVGNGVSSEIDKVDENEALAPFMKFFKTKDSVEGQEEEEKVFQAFEEKIDGDEPTEKAVKLNVEYYEPKPGDVVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEFLMCDLVKDAETFMVNGKMGLVKYDDAVSPGPGPGRPVVETGTILFAEVLGRTLSGRPLLSTRRLFRRLAWHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNNFTELKENVGRRIFVQITRIDEDKNDLILSERQAWEMLCLREGTLLEGTVKKIFPYGAQVRIGDTNRNGLLHVSNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVFSEAKVMAKKYRQKLPAVEGIPRPERAAITGLPFENESSICANWKWFKFER

Homology

[Close]

BLAST of Sed0020223 vs. NCBI nr
Match: XP_038886053.1 (protein PIGMENT DEFECTIVE 338, chloroplastic [Benincasa hispida])

HSP 1 Score: 857.1 bits (2213), Expect = 8.4e-245
Identity = 441/530 (83.21%), Postives = 475/530 (89.62%), Query Frame = 0


Query: 22  MLMLAGIHPCKYLFVPNSSFEPRNFLVSINSAR--AFLTVH----PRVSNSKFCNSSNWF 81
           ML+LAG+  CKYL VPNSSFE R+FLVS NS +  AFLTV     PR+SNS  C++ N  
Sbjct: 1   MLILAGLQSCKYLCVPNSSFESRDFLVSSNSVKNSAFLTVPRLPVPRISNSTLCSTYNCS 60

Query: 82  NNCNESKKFPFRERNSEVFCSRNDVFGHLSNTQLPDKPREDGIQEIDELGLLNKPSPAPV 141
           NNC  SKK  FR R+S VFCSRND+F + S+TQLPDK REDGIQEIDE+GLLNKPSPAP+
Sbjct: 61  NNCKTSKKLTFRGRSSVVFCSRNDIFDNFSSTQLPDKSREDGIQEIDEIGLLNKPSPAPI 120

Query: 142 GNGVSSEIDK----VDENEALAPFMKFFKTKDSVEGQEEEEKVFQAFEEKIDGDEPTEKA 201
            NGVSSEIDK    +DENEALAPFMKFFKTKDS + +EEEEK  +AFEEKIDGD+ TEK 
Sbjct: 121 SNGVSSEIDKEVENLDENEALAPFMKFFKTKDSADEEEEEEKALRAFEEKIDGDDETEKG 180

Query: 202 VKLNVEYYEPKPGDVVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEFLMCDL 261
            KLNVEYYEPKPGDVVVGVVVSGNENKLD+NVGADLLGTMLTKEVLPLYDKEMEFLMCDL
Sbjct: 181 NKLNVEYYEPKPGDVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDL 240

Query: 262 VKDAETFMVNGKMGLVKYDDAVSPGPGPGRPVVETGTILFAEVLGRTLSGRPLLSTRRLF 321
            KDAE+FM+NGKMGLVKY+DA S GPGPGRPVVETGT+LFAEVLGRTLSGRPLLSTRRLF
Sbjct: 241 DKDAESFMMNGKMGLVKYEDAFSRGPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLF 300

Query: 322 RRLAWHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNNFTELKENV 381
           RRLAWHRVRQIK L+EPIEV+ISEWNTGGLLTRIEGLRAFLPK ELLNRVNNFTELKENV
Sbjct: 301 RRLAWHRVRQIKRLDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENV 360

Query: 382 GRRIFVQITRIDEDKNDLILSERQAWEMLCLREGTLLEGTVKKIFPYGAQVRIGDTNRNG 441
           GRRIFVQITRIDE KNDLILSERQAWE L LREGTLLEGTVKKIFPYGAQ+RIGDTNR+G
Sbjct: 361 GRRIFVQITRIDEAKNDLILSERQAWESLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSG 420

Query: 442 LLHVSNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVF 501
           LLHVSNITRARVTSVSDLL VGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVF
Sbjct: 421 LLHVSNITRARVTSVSDLLAVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVF 480

Query: 502 SEAKVMAKKYRQKLPAVEGIPRPERAAITGLPFENESSICANWKWFKFER 542
           SEAK+MA++YRQ+LP ++GI RPE A  T LPFENESS+ ANWKWFKFER
Sbjct: 481 SEAKIMAREYRQRLPTLDGILRPEPAPTTDLPFENESSMYANWKWFKFER 530

[Close]

BLAST of Sed0020223 vs. NCBI nr
Match: XP_008456726.1 (PREDICTED: 30S ribosomal protein S1 homolog A isoform X1 [Cucumis melo])

HSP 1 Score: 847.0 bits (2187), Expect = 8.7e-242
Identity = 436/530 (82.26%), Postives = 474/530 (89.43%), Query Frame = 0


Query: 22  MLMLAGIHPCKYLFVPNSSFEPRNFLVSINSAR--AFLTVH----PRVSNSKFCNSSNWF 81
           ML+LAG+  CKYL VPNSSFE ++FLVS NS R  AFL V      R+SNS  C++SN  
Sbjct: 1   MLILAGLQTCKYLCVPNSSFESQDFLVSSNSVRNSAFLAVPRLPVQRISNSNLCSTSNCS 60

Query: 82  NNCNESKKFPFRERNSEVFCSRNDVFGHLSNTQLPDKPREDGIQEIDELGLLNKPSPAPV 141
           +NCNESKK  FR R+S + CSRND+F +LS+TQLPDKP  DGIQEIDE+GLLNKPSPAP+
Sbjct: 61  DNCNESKKLTFRRRSSVLLCSRNDIFDNLSSTQLPDKPLVDGIQEIDEIGLLNKPSPAPI 120

Query: 142 GNGVSSEIDK----VDENEALAPFMKFFKTKDSVEGQEEEEKVFQAFEEKIDGDEPTEKA 201
            NGVSSEID+     DENEALAPFMKFFK KDS + +EEE+K  +AFEEKIDGD+ TE A
Sbjct: 121 SNGVSSEIDEEVENPDENEALAPFMKFFKNKDSADEKEEEDKALRAFEEKIDGDDETEIA 180

Query: 202 VKLNVEYYEPKPGDVVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEFLMCDL 261
            KLNVEYYEPKPGDVVVGVVVSGNENKLD+NVGADLLGTMLTKEVLPLYDKEMEFLMCDL
Sbjct: 181 NKLNVEYYEPKPGDVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDL 240

Query: 262 VKDAETFMVNGKMGLVKYDDAVSPGPGPGRPVVETGTILFAEVLGRTLSGRPLLSTRRLF 321
            KDAE+FM+NGKMGLVKY+DA S G GPGRPVVE GT+LFAEVLGRTLSGRPLLSTRRLF
Sbjct: 241 DKDAESFMMNGKMGLVKYEDAFSRGQGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRLF 300

Query: 322 RRLAWHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNNFTELKENV 381
           RRLAWHRVRQIKGL+EPIEV+ISEWNTGGLLTRIEGLRAFLPK ELLNRVNNFTELKENV
Sbjct: 301 RRLAWHRVRQIKGLDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENV 360

Query: 382 GRRIFVQITRIDEDKNDLILSERQAWEMLCLREGTLLEGTVKKIFPYGAQVRIGDTNRNG 441
           GRRIFVQITRIDE KNDLILSE+QAWE L LREGTLLEGTVKKIFPYGAQ+RIGDTNR+G
Sbjct: 361 GRRIFVQITRIDEAKNDLILSEKQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSG 420

Query: 442 LLHVSNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVF 501
           LLHVSNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFI+NKEKVF
Sbjct: 421 LLHVSNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFITNKEKVF 480

Query: 502 SEAKVMAKKYRQKLPAVEGIPRPERAAITGLPFENESSICANWKWFKFER 542
           SEAK+MAKKYRQ+LPA++GIPR + A  T LPFENESS+ ANWKWFKFER
Sbjct: 481 SEAKIMAKKYRQRLPALDGIPRLDTAPTTDLPFENESSMYANWKWFKFER 530

[Close]

BLAST of Sed0020223 vs. NCBI nr
Match: XP_023551503.1 (uncharacterized protein LOC111809291 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 846.7 bits (2186), Expect = 1.1e-241
Identity = 434/524 (82.82%), Postives = 466/524 (88.93%), Query Frame = 0


Query: 22  MLMLAGIHPCKYLFVPNSSFEPRNFLVSINSARAFLTVHPRVSNSKFCNSSNWFNNCNES 81
           ML+LAGI PCK L   NSS EP++FLVS NS R    + PR+SN K  ++SNW NNCN+S
Sbjct: 2   MLILAGIQPCKCLCALNSSSEPQDFLVSSNSLRNSSFLTPRISNFKLYSTSNWSNNCNKS 61

Query: 82  KKFPFRERNSEVFCSRNDVFGHLSNTQLPDKPREDGIQEIDELGLLNKPSPAPVGNGVSS 141
           KK P R R+S VFCSRN++F + S+TQLP+KP ED IQ IDE+GLLNKPSPAP+ NGVSS
Sbjct: 62  KKLPLRRRSSVVFCSRNEIFDNFSSTQLPNKPSEDEIQGIDEIGLLNKPSPAPINNGVSS 121

Query: 142 EIDK----VDENEALAPFMKFFKTKDSVEGQEEEEKVFQAFEEKIDGDEPTEKAVKLNVE 201
           E D+     DENEALAPFMKFFK  D+VE +EEEEK  +AFEEKIDGDE   KA KLNVE
Sbjct: 122 EFDEEVENPDENEALAPFMKFFKNTDAVEEEEEEEKAVRAFEEKIDGDEEIVKATKLNVE 181

Query: 202 YYEPKPGDVVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEFLMCDLVKDAET 261
           YYEPKPGDVVVGVVVSGNENKLD+NVGADLLGTMLTKEVLPLYDKE+EFLMCDL KDAE+
Sbjct: 182 YYEPKPGDVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDAES 241

Query: 262 FMVNGKMGLVKYDDAVSPGPGPGRPVVETGTILFAEVLGRTLSGRPLLSTRRLFRRLAWH 321
           FM+NGKMGLVKYDDAVS GPGPGRPVVETGT+LFAEVLGRTLSGRPLLSTRRLFRRLAWH
Sbjct: 242 FMMNGKMGLVKYDDAVSRGPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWH 301

Query: 322 RVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNNFTELKENVGRRIFV 381
           RVRQIK L+EPIEV+ISEWNTGGLLTRIEGLRAFLPK ELLNRVNNFTELKENVGRRIFV
Sbjct: 302 RVRQIKRLDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFV 361

Query: 382 QITRIDEDKNDLILSERQAWEMLCLREGTLLEGTVKKIFPYGAQVRIGDTNRNGLLHVSN 441
           QI RIDE KNDLILSERQAWE L LREGTLLEGTVKKIFPYGAQ+RIGDTNR+GLLHVSN
Sbjct: 362 QIMRIDEAKNDLILSERQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSN 421

Query: 442 ITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVFSEAKVM 501
           ITRARVTSVSDLL VGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVFSEAK+M
Sbjct: 422 ITRARVTSVSDLLAVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVFSEAKIM 481

Query: 502 AKKYRQKLPAVEGIPRPERAAITGLPFENESSICANWKWFKFER 542
           AKKYRQ+LPAVEG  RPE A  T LPFENESS+ ANWKWFKFER
Sbjct: 482 AKKYRQRLPAVEGFTRPEPAPTTDLPFENESSMYANWKWFKFER 525

[Close]

BLAST of Sed0020223 vs. NCBI nr
Match: XP_004140950.1 (protein PIGMENT DEFECTIVE 338, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 836.3 bits (2159), Expect = 1.5e-238
Identity = 429/530 (80.94%), Postives = 472/530 (89.06%), Query Frame = 0


Query: 22  MLMLAGIHPCKYLFVPNSSFEPRNFLVSINSAR--AFLTVH----PRVSNSKFCNSSNWF 81
           M++LAG+ PCKYL VPNSSFE ++FLVS NS R  AFL V      R+SNS  C++S   
Sbjct: 1   MVILAGLQPCKYLCVPNSSFESQDFLVSSNSVRNSAFLAVPRLPVQRISNSNLCSTSTCS 60

Query: 82  NNCNESKKFPFRERNSEVFCSRNDVFGHLSNTQLPDKPREDGIQEIDELGLLNKPSPAPV 141
           +NCN+SKK  FR R+S +FCSRND+F +LS+TQLPDKPR DGIQEIDE+GLLNKPSPAP+
Sbjct: 61  DNCNKSKKLTFRRRSSVLFCSRNDIFDNLSSTQLPDKPRVDGIQEIDEIGLLNKPSPAPI 120

Query: 142 GNGVSSEIDK----VDENEALAPFMKFFKTKDSVEGQEEEEKVFQAFEEKIDGDEPTEKA 201
            NGVSSEID+     DENEALAPFMKFFK KDS + +EEEE+  +AFEE IDGD+ TE A
Sbjct: 121 SNGVSSEIDQEVENPDENEALAPFMKFFKNKDSADEKEEEERALRAFEETIDGDDETEIA 180

Query: 202 VKLNVEYYEPKPGDVVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEFLMCDL 261
            KLNVEYYEPKPGDVVVGVVVSGNENKLD+NVGADLLGTMLTKEVLPLYDKEME L CDL
Sbjct: 181 NKLNVEYYEPKPGDVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEMESLTCDL 240

Query: 262 VKDAETFMVNGKMGLVKYDDAVSPGPGPGRPVVETGTILFAEVLGRTLSGRPLLSTRRLF 321
            KDAE+FM+NGKMGLVKY+DA S G GPGRPVVE GT+LFAEVLGRTLSGRPLLSTRRLF
Sbjct: 241 DKDAESFMMNGKMGLVKYEDAFSRGQGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRLF 300

Query: 322 RRLAWHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNNFTELKENV 381
           RRLAWHRVRQIKGL+EPIEV+ISEWNTGGLLTRIEGLRAFLPK ELLNRVNNFTELKENV
Sbjct: 301 RRLAWHRVRQIKGLDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENV 360

Query: 382 GRRIFVQITRIDEDKNDLILSERQAWEMLCLREGTLLEGTVKKIFPYGAQVRIGDTNRNG 441
           GRRIFVQITR+DE KNDLILSE+QAWE L LREGTLLEGTVKKIFPYGAQ+RIGDTNR+G
Sbjct: 361 GRRIFVQITRMDEAKNDLILSEKQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSG 420

Query: 442 LLHVSNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVF 501
           LLHVSNITRARVTSVSDLL+VGEKV VLVVKSMFPDKISLSIADLESEPGLFI+NKEKVF
Sbjct: 421 LLHVSNITRARVTSVSDLLSVGEKVNVLVVKSMFPDKISLSIADLESEPGLFITNKEKVF 480

Query: 502 SEAKVMAKKYRQKLPAVEGIPRPERAAITGLPFENESSICANWKWFKFER 542
           SEAK+MAKKYRQ+LP+++GI RP+ A  T LPFENESS+ ANWKWFKFER
Sbjct: 481 SEAKIMAKKYRQRLPSLDGILRPKTAPTTDLPFENESSMYANWKWFKFER 530

[Close]

BLAST of Sed0020223 vs. NCBI nr
Match: KAG7016396.1 (30S ribosomal protein S1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 836.3 bits (2159), Expect = 1.5e-238
Identity = 427/524 (81.49%), Postives = 464/524 (88.55%), Query Frame = 0


Query: 22  MLMLAGIHPCKYLFVPNSSFEPRNFLVSINSARAFLTVHPRVSNSKFCNSSNWFNNCNES 81
           ML+LAGI PCK L   NSS EP++FLVS NS R    + PR+SN K  ++SNW NNCN+S
Sbjct: 2   MLILAGIQPCKCLCALNSSSEPQDFLVSSNSLRNSAFLAPRISNFKLYSTSNWSNNCNKS 61

Query: 82  KKFPFRERNSEVFCSRNDVFGHLSNTQLPDKPREDGIQEIDELGLLNKPSPAPVGNGVSS 141
           KK   R R+S VFCSRN++F + S+T+LP+KP ED IQ +DE+GLLNKPSPAP+ NGVSS
Sbjct: 62  KKLSLRRRSSVVFCSRNEIFDNFSSTKLPNKPSEDEIQGLDEIGLLNKPSPAPINNGVSS 121

Query: 142 ----EIDKVDENEALAPFMKFFKTKDSVEGQEEEEKVFQAFEEKIDGDEPTEKAVKLNVE 201
               E++  DENEALAPFMKFFK+ D+VE +EEEEK  +AFEEKIDGDE   KA KLNVE
Sbjct: 122 EFEEEVENPDENEALAPFMKFFKSTDAVEEEEEEEKAVRAFEEKIDGDEEIVKANKLNVE 181

Query: 202 YYEPKPGDVVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEFLMCDLVKDAET 261
           YYEPKPGD+VVGVVVSGNENKLD+NVGADLLGTMLTKEVLPLYDKE+EFLMCDL KDAE+
Sbjct: 182 YYEPKPGDIVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDAES 241

Query: 262 FMVNGKMGLVKYDDAVSPGPGPGRPVVETGTILFAEVLGRTLSGRPLLSTRRLFRRLAWH 321
           FM+NGKMGLVKYDDA S GPGPGRPVVETGT+LFAEVLGRTLSGRPLLSTRRLFRRLAWH
Sbjct: 242 FMMNGKMGLVKYDDAFSRGPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLAWH 301

Query: 322 RVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNNFTELKENVGRRIFV 381
           RVRQIK L+EPIEV+ISEWNTGGLLTRIEGLRAFLPK ELLNRVNNFTELKENVGRRIFV
Sbjct: 302 RVRQIKRLDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRIFV 361

Query: 382 QITRIDEDKNDLILSERQAWEMLCLREGTLLEGTVKKIFPYGAQVRIGDTNRNGLLHVSN 441
           QI RIDE KNDLILSERQAWE L LREGTLLEGTVKKIFPYGAQ+RIGDTNR+GLLHVSN
Sbjct: 362 QIMRIDEAKNDLILSERQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHVSN 421

Query: 442 ITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVFSEAKVM 501
           ITRARVTSVSDLL VGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVFSEAK+M
Sbjct: 422 ITRARVTSVSDLLAVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVFSEAKIM 481

Query: 502 AKKYRQKLPAVEGIPRPERAAITGLPFENESSICANWKWFKFER 542
           AKKYRQ+LP VEG  RPE A  T LPFENESS+ ANWKWFKFER
Sbjct: 482 AKKYRQRLPVVEGFTRPEPAPTTDLPFENESSMYANWKWFKFER 525

[Close]

BLAST of Sed0020223 vs. ExPASy Swiss-Prot
Match: Q9M9H4 (Protein PIGMENT DEFECTIVE 338, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PDE338 PE=1 SV=1)

HSP 1 Score: 545.8 bits (1405), Expect = 5.4e-154
Identity = 291/470 (61.91%), Postives = 351/470 (74.68%), Query Frame = 0


Query: 75  FNNCNESKKFPFRERNSEVFCSRNDVFGHLSNTQLPDKPREDGIQEIDELGLLNKPSPAP 134
           F   +  ++F  R      FCSR DV G              GI   +E+ LLNKP+P P
Sbjct: 56  FRGFSICREFAVRGAYGIRFCSREDVSG----------VGNGGIVAEEEIELLNKPNPLP 115

Query: 135 VGNGVSSEIDKVDENEALAPFMKFFKTKDSVEGQEEEEKVFQAFEEKIDGDEPTEKAVKL 194
                + E  K D++  L PF+KFFK ++  EG E                E +++  ++
Sbjct: 116 --KSENEESGKADDDAILEPFLKFFKPEEEGEGIE---------------SEVSDETDRV 175

Query: 195 NVEYYEPKPGDVVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEFLMCDLVKD 254
           +VEYY+PKPGD VVGVVVSGNENKLDVN+GAD+LGTMLTKE+LPLYDKE+++L+CDL  D
Sbjct: 176 SVEYYDPKPGDFVVGVVVSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLLCDLKYD 235

Query: 255 AETFMVNGKMGLVKYDD---AVSPGPGPGRPVVETGTILFAEVLGRTLSGRPLLSTRRLF 314
           AE F+VNGKMG+VK DD    ++     GRPVVE GT++FAEVLGRTLSGRPLLS+RR F
Sbjct: 236 AEEFLVNGKMGIVKDDDEGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLLSSRRYF 295

Query: 315 RRLAWHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNNFTELKENV 374
           RR+AWHRVRQIK LNEPIEV+I+EWNTGGLLTRIEGLRAF+PK EL+ +VN FTELKENV
Sbjct: 296 RRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNTFTELKENV 355

Query: 375 GRRIFVQITRIDEDKNDLILSERQAWEMLCLREGTLLEGTVKKIFPYGAQVRIGDTNRNG 434
           GRR  VQITR++EDKNDLILSE+ AWE L LREGTLLEGTV KI PYGAQV++GD++R+G
Sbjct: 356 GRRFLVQITRLNEDKNDLILSEKVAWEKLYLREGTLLEGTVVKILPYGAQVKLGDSSRSG 415

Query: 435 LLHVSNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVF 494
           LLH+SNITR R+ SVSD+L V E VKVLVVKS+FPDKISLSIADLESEPGLFIS++EKVF
Sbjct: 416 LLHISNITRRRIGSVSDVLQVDESVKVLVVKSLFPDKISLSIADLESEPGLFISDREKVF 475

Query: 495 SEAKVMAKKYRQKLPAVEGIPRPERAAIT-GLPFENESSICANWKWFKFE 541
           +EA+ MAKKYR+K+P V   P  +R  IT   P   +  I ANW+WFKFE
Sbjct: 476 TEAEEMAKKYREKMPLVATSPISDRPPITSSFPQGKDEEIYANWEWFKFE 498

[Close]

BLAST of Sed0020223 vs. ExPASy Swiss-Prot
Match: P46228 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpsA PE=1 SV=4)

HSP 1 Score: 123.6 bits (309), Expect = 6.7e-27
Identity = 78/210 (37.14%), Postives = 121/210 (57.62%), Query Frame = 0


Query: 301 GRPLLSTRRLFRRLAWHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNR 360
           G+  LS RR+    AW RVRQ++  +  +  ++   N GG L RIEGLR F+P + +  R
Sbjct: 94  GQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTR 153

Query: 361 VNNFTELKEN-VGRRIFVQITRIDEDKNDLILSERQAW---EMLCLREGTLLEGTVKKIF 420
                + KE+ VG  + ++   +DED+N L+LS R+A    +M  L  G ++ G V+ I 
Sbjct: 154 -----KAKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVERKMNRLEVGEVVVGAVRGIK 213

Query: 421 PYGAQVRIGDTNRNGLLHVSNITRARVTSVSDLLTVGEKVKVLVVK-SMFPDKISLSIAD 480
           PYGA + IG    +GLLH+S I+   + +   +  V ++VKV+++       +ISLS   
Sbjct: 214 PYGAFIDIGGV--SGLLHISEISHDHIETPHSVFNVNDEVKVMIIDLDAERGRISLSTKQ 273

Query: 481 LESEPGLFISNKEKVFSEAKVMAKKYRQKL 506
           LE EPG  + N E V+ +A+ MA +YR+KL
Sbjct: 274 LEPEPGDMVRNPEVVYEKAEEMAAQYREKL 296

[Close]

BLAST of Sed0020223 vs. ExPASy Swiss-Prot
Match: P73530 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rps1A PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-25
Identity = 79/239 (33.05%), Postives = 129/239 (53.97%), Query Frame = 0


Query: 301 GRPLLSTRRLFRRLAWHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNR 360
           G+  LS RR+    AW RVRQ++  +  +   +   N GG L RIEGLR F+P + +  R
Sbjct: 93  GQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAR 152

Query: 361 VNNFTELKEN-VGRRIFVQITRIDEDKNDLILSERQAW---EMLCLREGTLLEGTVKKIF 420
                E KE+ VG  + ++   +DE++N L+LS R+A    +M  L    ++ G+V+ I 
Sbjct: 153 -----EAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVERKMNGLEVAQVVVGSVRGIK 212

Query: 421 PYGAQVRIGDTNRNGLLHVSNITRARVTSVSDLLTVGEKVKVLVVK-SMFPDKISLSIAD 480
           PYGA + IG    +GLLH+S I+   + +   +  V +++KV+++       +ISLS   
Sbjct: 213 PYGAFIDIGGV--SGLLHISEISHDHIDTPHSVFNVNDEIKVMIIDLDAERGRISLSTKQ 272

Query: 481 LESEPGLFISNKEKVFSEAKVMAKKYRQK-LPAVEGIPRPERAAITGLPFENESSICAN 534
           LE EPG  + +++ V   A  MA+ +RQK L   +GIP     ++     E + S+  +
Sbjct: 273 LEPEPGAMLKDRDLVNEMADEMAEIFRQKRLAEAQGIPYEPPTSVDDTDDEEDESLAVS 324

[Close]

BLAST of Sed0020223 vs. ExPASy Swiss-Prot
Match: P29344 (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.8e-25
Identity = 74/230 (32.17%), Postives = 134/230 (58.26%), Query Frame = 0


Query: 304 LLSTRRLFRRLAWHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNN 363
           +LS R++   LAW R RQ++  +  ++ +I   N GG++  +EGLR F+P     +++++
Sbjct: 162 ILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVP----FSQISS 221

Query: 364 FTELKENVGRRIFVQITRIDEDKNDLILSERQAW--EMLCLREGTLLEGTVKKIFPYGAQ 423
            +  +E + + I ++   +DE+++ L++S R+A       L  G+++ GTV+ + PYGA 
Sbjct: 222 KSSAEELLEKEIPLKFVEVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAF 281

Query: 424 VRIGDTNRNGLLHVSNITRARVTSVSDLLTVGEKVKVLVVK-SMFPDKISLSIADLESEP 483
           + IG    NGLLHVS I+  RV+ ++ +L  G+ +KV+++       ++SLS   LE  P
Sbjct: 282 IDIGGI--NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 341

Query: 484 GLFISNKEKVFSEAKVMAKKYRQKLPAVEGIPRPERAAITGLPFENESSI 531
           G  I N + VF +A+ MA+ +RQ++   E + R +      L F+ ES +
Sbjct: 342 GDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADM-----LRFQPESGL 380

[Close]

BLAST of Sed0020223 vs. ExPASy Swiss-Prot
Match: Q93VC7 (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 8.2e-25
Identity = 75/230 (32.61%), Postives = 130/230 (56.52%), Query Frame = 0


Query: 304 LLSTRRLFRRLAWHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNN 363
           LLS R +   LAW R RQ++  +  ++ ++   N GGL+  +EGLR F+P     +++++
Sbjct: 165 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVP----FSQISS 224

Query: 364 FTELKENVGRRIFVQITRIDEDKNDLILSERQAW--EMLCLREGTLLEGTVKKIFPYGAQ 423
               +E + + I ++   +DE++  L+LS R+A       L  G+++ G V+ + PYGA 
Sbjct: 225 KAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAF 284

Query: 424 VRIGDTNRNGLLHVSNITRARVTSVSDLLTVGEKVKVLVVK-SMFPDKISLSIADLESEP 483
           + IG    NGLLHVS I+  RV+ ++ +L  G+ +KV+++       ++SLS   LE  P
Sbjct: 285 IDIGGI--NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 344

Query: 484 GLFISNKEKVFSEAKVMAKKYRQKLPAVEGIPRPERAAITGLPFENESSI 531
           G  I N + VF +A+ MA+ +RQ++   E + R +      L F+ ES +
Sbjct: 345 GDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADM-----LRFQPESGL 383

[Close]

BLAST of Sed0020223 vs. ExPASy TrEMBL
Match: A0A1S3C3I1 (30S ribosomal protein S1 homolog A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496585 PE=4 SV=1)

HSP 1 Score: 847.0 bits (2187), Expect = 4.2e-242
Identity = 436/530 (82.26%), Postives = 474/530 (89.43%), Query Frame = 0


Query: 22  MLMLAGIHPCKYLFVPNSSFEPRNFLVSINSAR--AFLTVH----PRVSNSKFCNSSNWF 81
           ML+LAG+  CKYL VPNSSFE ++FLVS NS R  AFL V      R+SNS  C++SN  
Sbjct: 1   MLILAGLQTCKYLCVPNSSFESQDFLVSSNSVRNSAFLAVPRLPVQRISNSNLCSTSNCS 60

Query: 82  NNCNESKKFPFRERNSEVFCSRNDVFGHLSNTQLPDKPREDGIQEIDELGLLNKPSPAPV 141
           +NCNESKK  FR R+S + CSRND+F +LS+TQLPDKP  DGIQEIDE+GLLNKPSPAP+
Sbjct: 61  DNCNESKKLTFRRRSSVLLCSRNDIFDNLSSTQLPDKPLVDGIQEIDEIGLLNKPSPAPI 120

Query: 142 GNGVSSEIDK----VDENEALAPFMKFFKTKDSVEGQEEEEKVFQAFEEKIDGDEPTEKA 201
            NGVSSEID+     DENEALAPFMKFFK KDS + +EEE+K  +AFEEKIDGD+ TE A
Sbjct: 121 SNGVSSEIDEEVENPDENEALAPFMKFFKNKDSADEKEEEDKALRAFEEKIDGDDETEIA 180

Query: 202 VKLNVEYYEPKPGDVVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEFLMCDL 261
            KLNVEYYEPKPGDVVVGVVVSGNENKLD+NVGADLLGTMLTKEVLPLYDKEMEFLMCDL
Sbjct: 181 NKLNVEYYEPKPGDVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEMEFLMCDL 240

Query: 262 VKDAETFMVNGKMGLVKYDDAVSPGPGPGRPVVETGTILFAEVLGRTLSGRPLLSTRRLF 321
            KDAE+FM+NGKMGLVKY+DA S G GPGRPVVE GT+LFAEVLGRTLSGRPLLSTRRLF
Sbjct: 241 DKDAESFMMNGKMGLVKYEDAFSRGQGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRLF 300

Query: 322 RRLAWHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNNFTELKENV 381
           RRLAWHRVRQIKGL+EPIEV+ISEWNTGGLLTRIEGLRAFLPK ELLNRVNNFTELKENV
Sbjct: 301 RRLAWHRVRQIKGLDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENV 360

Query: 382 GRRIFVQITRIDEDKNDLILSERQAWEMLCLREGTLLEGTVKKIFPYGAQVRIGDTNRNG 441
           GRRIFVQITRIDE KNDLILSE+QAWE L LREGTLLEGTVKKIFPYGAQ+RIGDTNR+G
Sbjct: 361 GRRIFVQITRIDEAKNDLILSEKQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSG 420

Query: 442 LLHVSNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVF 501
           LLHVSNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFI+NKEKVF
Sbjct: 421 LLHVSNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFITNKEKVF 480

Query: 502 SEAKVMAKKYRQKLPAVEGIPRPERAAITGLPFENESSICANWKWFKFER 542
           SEAK+MAKKYRQ+LPA++GIPR + A  T LPFENESS+ ANWKWFKFER
Sbjct: 481 SEAKIMAKKYRQRLPALDGIPRLDTAPTTDLPFENESSMYANWKWFKFER 530

[Close]

BLAST of Sed0020223 vs. ExPASy TrEMBL
Match: A0A0A0K9H0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G053320 PE=4 SV=1)

HSP 1 Score: 836.3 bits (2159), Expect = 7.5e-239
Identity = 429/530 (80.94%), Postives = 472/530 (89.06%), Query Frame = 0


Query: 22  MLMLAGIHPCKYLFVPNSSFEPRNFLVSINSAR--AFLTVH----PRVSNSKFCNSSNWF 81
           M++LAG+ PCKYL VPNSSFE ++FLVS NS R  AFL V      R+SNS  C++S   
Sbjct: 1   MVILAGLQPCKYLCVPNSSFESQDFLVSSNSVRNSAFLAVPRLPVQRISNSNLCSTSTCS 60

Query: 82  NNCNESKKFPFRERNSEVFCSRNDVFGHLSNTQLPDKPREDGIQEIDELGLLNKPSPAPV 141
           +NCN+SKK  FR R+S +FCSRND+F +LS+TQLPDKPR DGIQEIDE+GLLNKPSPAP+
Sbjct: 61  DNCNKSKKLTFRRRSSVLFCSRNDIFDNLSSTQLPDKPRVDGIQEIDEIGLLNKPSPAPI 120

Query: 142 GNGVSSEIDK----VDENEALAPFMKFFKTKDSVEGQEEEEKVFQAFEEKIDGDEPTEKA 201
            NGVSSEID+     DENEALAPFMKFFK KDS + +EEEE+  +AFEE IDGD+ TE A
Sbjct: 121 SNGVSSEIDQEVENPDENEALAPFMKFFKNKDSADEKEEEERALRAFEETIDGDDETEIA 180

Query: 202 VKLNVEYYEPKPGDVVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEFLMCDL 261
            KLNVEYYEPKPGDVVVGVVVSGNENKLD+NVGADLLGTMLTKEVLPLYDKEME L CDL
Sbjct: 181 NKLNVEYYEPKPGDVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEMESLTCDL 240

Query: 262 VKDAETFMVNGKMGLVKYDDAVSPGPGPGRPVVETGTILFAEVLGRTLSGRPLLSTRRLF 321
            KDAE+FM+NGKMGLVKY+DA S G GPGRPVVE GT+LFAEVLGRTLSGRPLLSTRRLF
Sbjct: 241 DKDAESFMMNGKMGLVKYEDAFSRGQGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRLF 300

Query: 322 RRLAWHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNNFTELKENV 381
           RRLAWHRVRQIKGL+EPIEV+ISEWNTGGLLTRIEGLRAFLPK ELLNRVNNFTELKENV
Sbjct: 301 RRLAWHRVRQIKGLDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENV 360

Query: 382 GRRIFVQITRIDEDKNDLILSERQAWEMLCLREGTLLEGTVKKIFPYGAQVRIGDTNRNG 441
           GRRIFVQITR+DE KNDLILSE+QAWE L LREGTLLEGTVKKIFPYGAQ+RIGDTNR+G
Sbjct: 361 GRRIFVQITRMDEAKNDLILSEKQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSG 420

Query: 442 LLHVSNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVF 501
           LLHVSNITRARVTSVSDLL+VGEKV VLVVKSMFPDKISLSIADLESEPGLFI+NKEKVF
Sbjct: 421 LLHVSNITRARVTSVSDLLSVGEKVNVLVVKSMFPDKISLSIADLESEPGLFITNKEKVF 480

Query: 502 SEAKVMAKKYRQKLPAVEGIPRPERAAITGLPFENESSICANWKWFKFER 542
           SEAK+MAKKYRQ+LP+++GI RP+ A  T LPFENESS+ ANWKWFKFER
Sbjct: 481 SEAKIMAKKYRQRLPSLDGILRPKTAPTTDLPFENESSMYANWKWFKFER 530

[Close]

BLAST of Sed0020223 vs. ExPASy TrEMBL
Match: A0A6J1JY23 (uncharacterized protein LOC111489862 OS=Cucurbita maxima OX=3661 GN=LOC111489862 PE=4 SV=1)

HSP 1 Score: 835.9 bits (2158), Expect = 9.7e-239
Identity = 433/526 (82.32%), Postives = 466/526 (88.59%), Query Frame = 0


Query: 22  MLMLAGIHPCKYLFVPNSSFEPRNFLVSINSAR--AFLTVHPRVSNSKFCNSSNWFNNCN 81
           ML+LAG+ PCK L   NSS EP++FLVS NS R  AFLT  PR+SN K  ++SNW NNCN
Sbjct: 2   MLILAGLQPCKCLCALNSSSEPQDFLVSSNSLRNSAFLT--PRISNFKLYSTSNWSNNCN 61

Query: 82  ESKKFPFRERNSEVFCSRNDVFGHLSNTQLPDKPREDGIQEIDELGLLNKPSPAPVGNGV 141
           +SKK   + R+S VFCSRN++F + S+TQLP+KP ED IQ IDE+GLLNKPSPAP+ NGV
Sbjct: 62  KSKKLTLQRRSSVVFCSRNEIFDNFSSTQLPNKPSEDEIQGIDEIGLLNKPSPAPINNGV 121

Query: 142 SSEIDK----VDENEALAPFMKFFKTKDSVEGQEEEEKVFQAFEEKIDGDEPTEKAVKLN 201
           SSE D+      ENEALAPFMKFFK  DSVE +EEEEK  +AFEEKIDGDE   KA KLN
Sbjct: 122 SSEFDEEVENPGENEALAPFMKFFKNTDSVEEEEEEEKAVRAFEEKIDGDEEIVKANKLN 181

Query: 202 VEYYEPKPGDVVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEFLMCDLVKDA 261
           VEYYEPKPGDVVVGVVVSGNENKLD+NVGADLLGTMLTKEVLPLYDKE+EFLMCDL KDA
Sbjct: 182 VEYYEPKPGDVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDA 241

Query: 262 ETFMVNGKMGLVKYDDAVSPGPGPGRPVVETGTILFAEVLGRTLSGRPLLSTRRLFRRLA 321
           E+FM+NGKMGLVKYDDAVS GPGPGRPVVETGT+LFAEVLGRTLSGRPLLSTRRLFRRLA
Sbjct: 242 ESFMMNGKMGLVKYDDAVSRGPGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLA 301

Query: 322 WHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNNFTELKENVGRRI 381
           WHRVRQIK L+EPIEV+ISEWNTGGLLTRIEGLRAFLPK ELLNRVNNFTELKENVGRRI
Sbjct: 302 WHRVRQIKRLDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRI 361

Query: 382 FVQITRIDEDKNDLILSERQAWEMLCLREGTLLEGTVKKIFPYGAQVRIGDTNRNGLLHV 441
           FVQI RIDE KNDLILSERQAWE L LREGTLLEGTVKKIFPYGAQ+RIGDTNR+GLLHV
Sbjct: 362 FVQIMRIDEAKNDLILSERQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHV 421

Query: 442 SNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVFSEAK 501
           SNITRARVTSVSDLL VGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVF EAK
Sbjct: 422 SNITRARVTSVSDLLAVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVFLEAK 481

Query: 502 VMAKKYRQKLPAVEGIPRPERAAITGLPFENESSICANWKWFKFER 542
           +MAKKYRQ+LPAVEG  RPE A  T LPF+NESS+ ANWKWFKFER
Sbjct: 482 IMAKKYRQRLPAVEGFTRPEPAPTTDLPFDNESSMYANWKWFKFER 525

[Close]

BLAST of Sed0020223 vs. ExPASy TrEMBL
Match: A0A6J1FMS2 (uncharacterized protein LOC111445605 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445605 PE=4 SV=1)

HSP 1 Score: 832.8 bits (2150), Expect = 8.2e-238
Identity = 432/526 (82.13%), Postives = 465/526 (88.40%), Query Frame = 0


Query: 22  MLMLAGIHPCKYLFVPNSSFEPRNFLVSINSAR--AFLTVHPRVSNSKFCNSSNWFNNCN 81
           ML+LAG+ PCK L   NSS EP++F VS NS R  AFLT  PR+SN K  ++SNW NNC+
Sbjct: 2   MLILAGLQPCKCLCALNSSSEPQDFSVSSNSLRNSAFLT--PRISNFKLYSTSNWSNNCD 61

Query: 82  ESKKFPFRERNSEVFCSRNDVFGHLSNTQLPDKPREDGIQEIDELGLLNKPSPAPVGNGV 141
           +SKK   R R+S VFCSRN++F + S+TQLP+KP ED IQ IDE+GLLNKPSPAP+ NGV
Sbjct: 62  KSKKLSLRRRSSVVFCSRNEIFDNFSSTQLPNKPSEDEIQGIDEIGLLNKPSPAPINNGV 121

Query: 142 SSEIDK----VDENEALAPFMKFFKTKDSVEGQEEEEKVFQAFEEKIDGDEPTEKAVKLN 201
           SSE D+     DENEALAPFMKFFK  D+VE +EEEEK  +AFEEKIDGDE   KA KLN
Sbjct: 122 SSEFDEEVENPDENEALAPFMKFFKNTDAVEEEEEEEKAVRAFEEKIDGDEEIVKANKLN 181

Query: 202 VEYYEPKPGDVVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEFLMCDLVKDA 261
           VEYYEPKPGDVVVGVVVSGNENKLD+NVGADLLGTMLTKEVLPLYDKE+EFLMCDL KDA
Sbjct: 182 VEYYEPKPGDVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEVEFLMCDLDKDA 241

Query: 262 ETFMVNGKMGLVKYDDAVSPGPGPGRPVVETGTILFAEVLGRTLSGRPLLSTRRLFRRLA 321
           E+FM+NGKMGLVKYDDAVS G GPGRPVVETGT+LFAEVLGRTLSGRPLLSTRRLFRRLA
Sbjct: 242 ESFMMNGKMGLVKYDDAVSRGLGPGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLFRRLA 301

Query: 322 WHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNNFTELKENVGRRI 381
           WHRVRQIK L+EPIEV+ISEWNTGGLLTRIEGLRAFLPK ELLNRVNNFTELKENVGRRI
Sbjct: 302 WHRVRQIKRLDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENVGRRI 361

Query: 382 FVQITRIDEDKNDLILSERQAWEMLCLREGTLLEGTVKKIFPYGAQVRIGDTNRNGLLHV 441
           FVQI RIDE KNDLILSERQAWE L LREGTLLEGTVKKIFPYGAQ+RIGDTNR+GLLHV
Sbjct: 362 FVQIMRIDEAKNDLILSERQAWETLYLREGTLLEGTVKKIFPYGAQIRIGDTNRSGLLHV 421

Query: 442 SNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVFSEAK 501
           SNITRARVTSVSDLL VGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVFSEAK
Sbjct: 422 SNITRARVTSVSDLLAVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVFSEAK 481

Query: 502 VMAKKYRQKLPAVEGIPRPERAAITGLPFENESSICANWKWFKFER 542
           +MAKKYRQ+LP VEG  RPE A  T LPFENESS+ ANWKWFKFER
Sbjct: 482 IMAKKYRQRLPVVEGFTRPEPAPTTDLPFENESSMYANWKWFKFER 525

[Close]

BLAST of Sed0020223 vs. ExPASy TrEMBL
Match: A0A6J1BXF7 (uncharacterized protein LOC111006579 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006579 PE=4 SV=1)

HSP 1 Score: 830.1 bits (2143), Expect = 5.3e-237
Identity = 429/530 (80.94%), Postives = 468/530 (88.30%), Query Frame = 0


Query: 22  MLMLAGIHPCKYLFVPNSSFEPRNFLVSINSAR--AFLTV----HPRVSNSKFCNSSNWF 81
           ML+LAGI PCK+  +PNSSFEP++FL+S N  R  +F+ V     P +S+ K  ++SNW 
Sbjct: 1   MLILAGIQPCKFPCLPNSSFEPQDFLISSNPQRNSSFINVPRVITPEISSFKLFSTSNWS 60

Query: 82  NNCNESKKFPFRERNSEVFCSRNDVFGHLSNTQLPDKPREDGIQEIDELGLLNKPSPAPV 141
           NN N+SKKFPFRERNS VFCSRNDVF + S+TQLPD+P+E+GIQEIDELGLL+KPSPAPV
Sbjct: 61  NNHNKSKKFPFRERNSVVFCSRNDVFDNFSSTQLPDRPKEEGIQEIDELGLLSKPSPAPV 120

Query: 142 GNGVSSEID----KVDENEALAPFMKFFKTKDSVEGQEEEEKVFQAFEEKIDGDEPTEKA 201
            NGVSSEID    K DENEALAPFMKFF+T DSV   EEEEK  Q  EEK++ ++ TEKA
Sbjct: 121 SNGVSSEIDKEDQKPDENEALAPFMKFFRTTDSV---EEEEKTLQVCEEKVEREDETEKA 180

Query: 202 VKLNVEYYEPKPGDVVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEFLMCDL 261
            KLNVEYYEPKPGDVVVGVVVSGNENKLD+NVGADLLGTMLTKEVLPLYDKEM+FLMCD 
Sbjct: 181 NKLNVEYYEPKPGDVVVGVVVSGNENKLDINVGADLLGTMLTKEVLPLYDKEMDFLMCDF 240

Query: 262 VKDAETFMVNGKMGLVKYDDAVSPGPGPGRPVVETGTILFAEVLGRTLSGRPLLSTRRLF 321
            KDAE+FMVNGKMGLVKY+DAVS GPG GRPVVETGT+LFAEVLGRTLSGRPLLSTRRLF
Sbjct: 241 DKDAESFMVNGKMGLVKYEDAVSRGPGSGRPVVETGTVLFAEVLGRTLSGRPLLSTRRLF 300

Query: 322 RRLAWHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNNFTELKENV 381
           RR+AWHRVRQIK L+EPIEV+ISEWNTGGLLTRIEGLRAFLPK ELLNRVNNFTELKENV
Sbjct: 301 RRIAWHRVRQIKRLDEPIEVKISEWNTGGLLTRIEGLRAFLPKAELLNRVNNFTELKENV 360

Query: 382 GRRIFVQITRIDEDKNDLILSERQAWEMLCLREGTLLEGTVKKIFPYGAQVRIGDTNRNG 441
           GRRIFVQI RIDE KNDLILSERQAWE L LREGTLLEGTVKKIFPYGAQ+RI DTNR+G
Sbjct: 361 GRRIFVQIMRIDESKNDLILSERQAWETLYLREGTLLEGTVKKIFPYGAQIRIRDTNRSG 420

Query: 442 LLHVSNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVF 501
           LLHVSNITR+RVTSVSDLL VGE VKVLVVKSMFPDKISLSIADLESEPGLFI NKEKVF
Sbjct: 421 LLHVSNITRSRVTSVSDLLAVGENVKVLVVKSMFPDKISLSIADLESEPGLFILNKEKVF 480

Query: 502 SEAKVMAKKYRQKLPAVEGIPRPERAAITGLPFENESSICANWKWFKFER 542
           +EA+VMAKKYRQKLPA+EGIP  E    T LPFENESS+ ANWKWFKFER
Sbjct: 481 AEAEVMAKKYRQKLPAIEGIPTSEPVLTTDLPFENESSMYANWKWFKFER 527

[Close]

BLAST of Sed0020223 vs. TAIR 10
Match: AT1G71720.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 545.8 bits (1405), Expect = 3.9e-155
Identity = 291/470 (61.91%), Postives = 351/470 (74.68%), Query Frame = 0


Query: 75  FNNCNESKKFPFRERNSEVFCSRNDVFGHLSNTQLPDKPREDGIQEIDELGLLNKPSPAP 134
           F   +  ++F  R      FCSR DV G              GI   +E+ LLNKP+P P
Sbjct: 56  FRGFSICREFAVRGAYGIRFCSREDVSG----------VGNGGIVAEEEIELLNKPNPLP 115

Query: 135 VGNGVSSEIDKVDENEALAPFMKFFKTKDSVEGQEEEEKVFQAFEEKIDGDEPTEKAVKL 194
                + E  K D++  L PF+KFFK ++  EG E                E +++  ++
Sbjct: 116 --KSENEESGKADDDAILEPFLKFFKPEEEGEGIE---------------SEVSDETDRV 175

Query: 195 NVEYYEPKPGDVVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLYDKEMEFLMCDLVKD 254
           +VEYY+PKPGD VVGVVVSGNENKLDVN+GAD+LGTMLTKE+LPLYDKE+++L+CDL  D
Sbjct: 176 SVEYYDPKPGDFVVGVVVSGNENKLDVNIGADMLGTMLTKEILPLYDKELDYLLCDLKYD 235

Query: 255 AETFMVNGKMGLVKYDD---AVSPGPGPGRPVVETGTILFAEVLGRTLSGRPLLSTRRLF 314
           AE F+VNGKMG+VK DD    ++     GRPVVE GT++FAEVLGRTLSGRPLLS+RR F
Sbjct: 236 AEEFLVNGKMGIVKDDDEGVEIAEFARQGRPVVEIGTVVFAEVLGRTLSGRPLLSSRRYF 295

Query: 315 RRLAWHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNNFTELKENV 374
           RR+AWHRVRQIK LNEPIEV+I+EWNTGGLLTRIEGLRAF+PK EL+ +VN FTELKENV
Sbjct: 296 RRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNTFTELKENV 355

Query: 375 GRRIFVQITRIDEDKNDLILSERQAWEMLCLREGTLLEGTVKKIFPYGAQVRIGDTNRNG 434
           GRR  VQITR++EDKNDLILSE+ AWE L LREGTLLEGTV KI PYGAQV++GD++R+G
Sbjct: 356 GRRFLVQITRLNEDKNDLILSEKVAWEKLYLREGTLLEGTVVKILPYGAQVKLGDSSRSG 415

Query: 435 LLHVSNITRARVTSVSDLLTVGEKVKVLVVKSMFPDKISLSIADLESEPGLFISNKEKVF 494
           LLH+SNITR R+ SVSD+L V E VKVLVVKS+FPDKISLSIADLESEPGLFIS++EKVF
Sbjct: 416 LLHISNITRRRIGSVSDVLQVDESVKVLVVKSLFPDKISLSIADLESEPGLFISDREKVF 475

Query: 495 SEAKVMAKKYRQKLPAVEGIPRPERAAIT-GLPFENESSICANWKWFKFE 541
           +EA+ MAKKYR+K+P V   P  +R  IT   P   +  I ANW+WFKFE
Sbjct: 476 TEAEEMAKKYREKMPLVATSPISDRPPITSSFPQGKDEEIYANWEWFKFE 498

[Close]

BLAST of Sed0020223 vs. TAIR 10
Match: AT5G30510.1 (ribosomal protein S1 )

HSP 1 Score: 116.7 bits (291), Expect = 5.8e-26
Identity = 75/230 (32.61%), Postives = 130/230 (56.52%), Query Frame = 0


Query: 304 LLSTRRLFRRLAWHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTELLNRVNN 363
           LLS R +   LAW R RQ++  +  ++ ++   N GGL+  +EGLR F+P     +++++
Sbjct: 165 LLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVP----FSQISS 224

Query: 364 FTELKENVGRRIFVQITRIDEDKNDLILSERQAW--EMLCLREGTLLEGTVKKIFPYGAQ 423
               +E + + I ++   +DE++  L+LS R+A       L  G+++ G V+ + PYGA 
Sbjct: 225 KAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAF 284

Query: 424 VRIGDTNRNGLLHVSNITRARVTSVSDLLTVGEKVKVLVVK-SMFPDKISLSIADLESEP 483
           + IG    NGLLHVS I+  RV+ ++ +L  G+ +KV+++       ++SLS   LE  P
Sbjct: 285 IDIGGI--NGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 344

Query: 484 GLFISNKEKVFSEAKVMAKKYRQKLPAVEGIPRPERAAITGLPFENESSI 531
           G  I N + VF +A+ MA+ +RQ++   E + R +      L F+ ES +
Sbjct: 345 GDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADM-----LRFQPESGL 383

[Close]

BLAST of Sed0020223 vs. TAIR 10
Match: AT3G23700.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 67.4 bits (163), Expect = 4.0e-11
Identity = 54/180 (30.00%), Postives = 86/180 (47.78%), Query Frame = 0


Query: 316 WHRVRQIKGLNEPIEVQISEWNTGGLLTRIEGLRAFLPKTEL------LNRVNNFTEL-K 375
           W   +      +  E ++  +N GGLL R   L  FLP  +L           +  E+ K
Sbjct: 97  WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAK 156

Query: 376 ENVGRRIFVQITRIDEDKNDLILSERQA-WEMLC--LREGTLLEGTVKKIFPYGAQVRI- 435
             VG ++ V++ + DE+   LILSE+ A W      +  G +  G V  +  YGA + + 
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLR 216

Query: 436 ---GDTNRNGLLHVSNITRARVTSVSDLLTVGEKVKVLVVK-SMFPDKISLSIADLESEP 481
              G  +  GL+HVS ++   V  V D+L  G++V+V+V        +I+LSI  LE +P
Sbjct: 217 FDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276

[Close]

BLAST of Sed0020223 vs. TAIR 10
Match: AT4G29060.1 (elongation factor Ts family protein )

HSP 1 Score: 44.3 bits (103), Expect = 3.7e-04
Identity = 28/77 (36.36%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 405 GTLLEGTVKKIFPYGAQVRIGDTNRNGLLHVSNITRARVTSVSDLLTVGEKVKVLVVKSM 464
           G    G V+ I P+GA V  G    +GL+HVS ++   V  VS ++T+G++VKV +V++ 
Sbjct: 136 GATFTGKVRAIQPFGAFVDFG-AFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEAD 195

Query: 465 FPDK-ISLSIADLESEP 481
              K ISL++ + +  P
Sbjct: 196 IESKRISLTMRENDDPP 211

[Close]

BLAST of Sed0020223 vs. TAIR 10
Match: AT4G29060.2 (elongation factor Ts family protein )

HSP 1 Score: 44.3 bits (103), Expect = 3.7e-04
Identity = 28/77 (36.36%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 405 GTLLEGTVKKIFPYGAQVRIGDTNRNGLLHVSNITRARVTSVSDLLTVGEKVKVLVVKSM 464
           G    G V+ I P+GA V  G    +GL+HVS ++   V  VS ++T+G++VKV +V++ 
Sbjct: 136 GATFTGKVRAIQPFGAFVDFG-AFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRLVEAD 195

Query: 465 FPDK-ISLSIADLESEP 481
              K ISL++ + +  P
Sbjct: 196 IESKRISLTMRENDDPP 211

The following BLAST results are available for this feature:

BLAST of Sed0020223 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886053.1	8.4e-245	83.21	protein PIGMENT DEFECTIVE 338, chloroplastic [Benincasa hispida]	[more]
XP_008456726.1	8.7e-242	82.26	PREDICTED: 30S ribosomal protein S1 homolog A isoform X1 [Cucumis melo]	[more]
XP_023551503.1	1.1e-241	82.82	uncharacterized protein LOC111809291 [Cucurbita pepo subsp. pepo]	[more]
XP_004140950.1	1.5e-238	80.94	protein PIGMENT DEFECTIVE 338, chloroplastic isoform X1 [Cucumis sativus]	[more]
KAG7016396.1	1.5e-238	81.49	30S ribosomal protein S1, chloroplastic [Cucurbita argyrosperma subsp. argyrospe...	[more]

BLAST of Sed0020223 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9H4	5.4e-154	61.91	Protein PIGMENT DEFECTIVE 338, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
P46228	6.7e-27	37.14	30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA...	[more]
P73530	2.1e-25	33.05	30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus...	[more]
P29344	2.8e-25	32.17	30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=...	[more]
Q93VC7	8.2e-25	32.61	30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 ...	[more]

BLAST of Sed0020223 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C3I1	4.2e-242	82.26	30S ribosomal protein S1 homolog A isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0K9H0	7.5e-239	80.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G053320 PE=4 SV=1	[more]
A0A6J1JY23	9.7e-239	82.32	uncharacterized protein LOC111489862 OS=Cucurbita maxima OX=3661 GN=LOC111489862...	[more]
A0A6J1FMS2	8.2e-238	82.13	uncharacterized protein LOC111445605 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1BXF7	5.3e-237	80.94	uncharacterized protein LOC111006579 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Sed0020223 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G71720.1	3.9e-155	61.91	Nucleic acid-binding proteins superfamily	[more]
AT5G30510.1	5.8e-26	32.61	ribosomal protein S1	[more]
AT3G23700.1	4.0e-11	30.00	Nucleic acid-binding proteins superfamily	[more]
AT4G29060.1	3.7e-04	36.36	elongation factor Ts family protein	[more]
AT4G29060.2	3.7e-04	36.36	elongation factor Ts family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 324..394 e-value: 0.0034 score: 26.6 coord: 403..474 e-value: 9.2E-14 score: 61.7
None	No IPR available	GENE3D	2.40.50.140		coord: 316..401 e-value: 2.0E-5 score: 26.6
None	No IPR available	GENE3D	2.40.50.140		coord: 402..482 e-value: 1.2E-17 score: 65.7
None	No IPR available	PANTHER	PTHR15838	NUCLEOLAR PROTEIN OF 40 KDA	coord: 28..541
None	No IPR available	PANTHER	PTHR15838:SF3	F14O23.10 PROTEIN	coord: 28..541
None	No IPR available	CDD	cd04465	S1_RPS1_repeat_ec2_hs2	coord: 326..394 e-value: 1.76026E-15 score: 69.0247
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 403..463 e-value: 5.4E-9 score: 36.3
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 405..474 score: 15.791401
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 326..394 score: 11.831648
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 326..399
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 403..484
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 198..310

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020223.1	Sed0020223.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043489	RNA stabilization
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding