Sed0018019.1 (mRNA) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTCCCAAGGGGCACAATGGTTGAAAACTTGGGTTTCAAAGGTATGCTATCTTCAAGGTTCCAGGTTCGAAACTCTGTTATGACATTACCCTTTCGATGTCTCTCGGTGCTTGACCTAGGGACAGGCGTGGTTACCCTTATTTAAAAAAAAAAAAAAATCACTTGGTGATGTAATGATTGTTTCTGTTGTTTAAATACCTTTCTCCCTTCTTGGTATATTTTCTAAAAAGGAATTTCCTTTTGCTTGGGCTTGTAATTTGATTATTGTTTTGAATGGCTACATATTATAATTTATTGCATGCCTGGATGTTAGATTGTTTGAACTCGAAAGAAGCTTGAAAAGGAAAACAATTATTTATTTATTTTTAACTTGTTTCTGGTAGGTTCATGAGAAGGACGTGATAGGTGTGAGCCATCATCCTCATAGAAATCTCGTTGCCACTTATAGTGAAGACAGCACTATGAAACTATGGAAGCCTTGA ATGCTCCCAAGGGGCACAATGGTTGAAAACTTGGGTTTCAAAGGTATGCTATCTTCAAGGTTCCAGGTTCGAAACTCTGTTATGACATTACCCTTTCGATGTCTCTCGGGACAGGCGTGGTTACCCTTATTTAAAAAAAAAAAAAAATCACTTGGTGATGTAATGATTGTTTCTGTTGAATTTCCTTTTGCTTGGGCTTGTAATTTGATTATTATTAAGCTTGAAAAGGAAAACAATTATTTATTTATTTTTAACTTGTTTCTGGTTCATGAGAAGGACGTGATAGGTGTGAGCCATCATCCTCATAGAAATCTCGTTGCCACTTATAGTGAAGACAGCACTATGAAACTATGGAAGCCTTGA ATGCTCCCAAGGGGCACAATGGTTGAAAACTTGGGTTTCAAAGGTATGCTATCTTCAAGGTTCCAGGTTCGAAACTCTGTTATGACATTACCCTTTCGATGTCTCTCGGGACAGGCGTGGTTACCCTTATTTAAAAAAAAAAAAAAATCACTTGGTGATGTAATGATTGTTTCTGTTGAATTTCCTTTTGCTTGGGCTTGTAATTTGATTATTATTAAGCTTGAAAAGGAAAACAATTATTTATTTATTTTTAACTTGTTTCTGGTTCATGAGAAGGACGTGATAGGTGTGAGCCATCATCCTCATAGAAATCTCGTTGCCACTTATAGTGAAGACAGCACTATGAAACTATGGAAGCCTTGA MLPRGTMVENLGFKGMLSSRFQVRNSVMTLPFRCLSGQAWLPLFKKKKKSLGDVMIVSVEFPFAWACNLIIIKLEKENNYLFIFNLFLVHEKDVIGVSHHPHRNLVATYSEDSTMKLWKP Homology
BLAST of Sed0018019.1 vs. NCBI nr
Match: KAF8037877.1 (hypothetical protein BT93_B0650 [Corymbia citriodora subsp. variegata]) HSP 1 Score: 79.0 bits (193), Expect = 3.2e-11 Identity = 49/104 (47.12%), Postives = 57/104 (54.81%), Query Frame = 0
BLAST of Sed0018019.1 vs. NCBI nr
Match: XP_038886288.1 (suppressor of mec-8 and unc-52 protein homolog 1 [Benincasa hispida]) HSP 1 Score: 77.8 bits (190), Expect = 7.1e-11 Identity = 49/104 (47.12%), Postives = 56/104 (53.85%), Query Frame = 0
BLAST of Sed0018019.1 vs. NCBI nr
Match: XP_002281533.1 (PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 isoform X1 [Vitis vinifera] >XP_034673200.1 suppressor of mec-8 and unc-52 protein homolog 1 [Vitis riparia] >CBI14981.3 unnamed protein product, partial [Vitis vinifera]) HSP 1 Score: 77.4 bits (189), Expect = 9.3e-11 Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0
BLAST of Sed0018019.1 vs. NCBI nr
Match: XP_022152482.1 (suppressor of mec-8 and unc-52 protein homolog 1 isoform X1 [Momordica charantia]) HSP 1 Score: 77.4 bits (189), Expect = 9.3e-11 Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0
BLAST of Sed0018019.1 vs. NCBI nr
Match: XP_019082149.1 (PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 isoform X2 [Vitis vinifera]) HSP 1 Score: 77.4 bits (189), Expect = 9.3e-11 Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0
BLAST of Sed0018019.1 vs. ExPASy Swiss-Prot
Match: Q8W117 (Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SMU1 PE=1 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 3.9e-12 Identity = 43/106 (40.57%), Postives = 54/106 (50.94%), Query Frame = 0
BLAST of Sed0018019.1 vs. ExPASy Swiss-Prot
Match: Q2TBS9 (WD40 repeat-containing protein SMU1 OS=Bos taurus OX=9913 GN=SMU1 PE=2 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 6.3e-10 Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0
BLAST of Sed0018019.1 vs. ExPASy Swiss-Prot
Match: Q5ZME8 (WD40 repeat-containing protein SMU1 OS=Gallus gallus OX=9031 GN=SMU1 PE=2 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 6.3e-10 Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0
BLAST of Sed0018019.1 vs. ExPASy Swiss-Prot
Match: Q76B40 (WD40 repeat-containing protein SMU1 OS=Cricetulus griseus OX=10029 GN=SMU1 PE=1 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 6.3e-10 Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0
BLAST of Sed0018019.1 vs. ExPASy Swiss-Prot
Match: Q2TAY7 (WD40 repeat-containing protein SMU1 OS=Homo sapiens OX=9606 GN=SMU1 PE=1 SV=2) HSP 1 Score: 65.1 bits (157), Expect = 6.3e-10 Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0
BLAST of Sed0018019.1 vs. ExPASy TrEMBL
Match: D7SHM1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_17s0000g08930 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 4.5e-11 Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0
BLAST of Sed0018019.1 vs. ExPASy TrEMBL
Match: A0A6J1DGD4 (suppressor of mec-8 and unc-52 protein homolog 1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020200 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 4.5e-11 Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0
BLAST of Sed0018019.1 vs. ExPASy TrEMBL
Match: A0A6J1JRS0 (suppressor of mec-8 and unc-52 protein homolog 1-like OS=Cucurbita maxima OX=3661 GN=LOC111489200 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 5.9e-11 Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0
BLAST of Sed0018019.1 vs. ExPASy TrEMBL
Match: A0A6J1FGH2 (suppressor of mec-8 and unc-52 protein homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111445274 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 5.9e-11 Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0
BLAST of Sed0018019.1 vs. ExPASy TrEMBL
Match: A0A1S3B3I2 (suppressor of mec-8 and unc-52 protein homolog 1 OS=Cucumis melo OX=3656 GN=LOC103485374 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 5.9e-11 Identity = 48/104 (46.15%), Postives = 56/104 (53.85%), Query Frame = 0
BLAST of Sed0018019.1 vs. TAIR 10
Match: AT1G73720.1 (transducin family protein / WD-40 repeat family protein ) HSP 1 Score: 72.4 bits (176), Expect = 2.8e-13 Identity = 43/106 (40.57%), Postives = 54/106 (50.94%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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