Clc02G00160 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCTCCATGTTGGTGTTTTATTTATTTATTTCTGTTCTTCCAAATTTAAAATATGTACCATCCCATTTCATTCATCCACCCTTGTCTTCTTTTTTTCAGTCCTTTGACTCCACTCATTTAAATAAAAATCTCTTTGATCTTATTAATTTACAATACCACCCCCCCTCAAACTCCTAAAAATTTATTGAAATGGAAGGGTGGGATTGCAATTGAAAAATAAAAGAAGCCCCAAAGAGCAAAAAAAGAAAAGTAGTGATGGAGGGCACAAAAATAAAAATGAACTAAGAATTTAGAACCACTCAATTCATCTCACCAACCTGGTCAAACGTTCTCTATGTCTAAGATGCTGCCCGCTGCCCCCTGCCCGAGAATAACAACGTTAAAAGGAAGAAAGTCCCGAGTCAATTGCTTGTTTTCCTTTACCACCTCACCTCCATATATATATTATCACATAAATAATTTACACTTTAATTTTTTATTTTAATTTTTAATTTAAATATCTGTGTGTTCACCAACTCCCTTAGCTATTAGTTTCTTCCATCTCCATATATTTCTCTATCGCTCTCTCTTCTCACCAACTTCTATCTTCAAATAATAATTCCCATATTCCTTCAATTTATCAGTAGTGTGTTTGTGTTTCTATGGGCAGATCTCCTTGCTGTGAGAAACAACACACCAACAAAGGTGCATGGACCAAAGAAGAAGACCAACGTCTTATCAACTACATCCAAATCCACGGCGATGGTTGTTGGAGATCTCTCCCTAAAGCTGCTGGTGCGCTTAATTAATTGAACATTATATTCCAACTTCTAACTTCTTCTAATTATATATTATCATTTCCTACCATTTTTATAAATATATTTCAATACACAATATAGGGTTGTTTCGGTGTGGTAAGAGTTGTCGGCTACGATGGATCAATTATCTCCGTCCAGATCTCAAGAGAGGGAATTTCACTCCTGAGGAAGATGAAATCATCATCAATCTCCATAGTCTACTTGGTAACAAGTAAGCATATCAAATCAATACCTCCTATCTATCTTCTTTCTAACTCTACCTTCTCTATATATATATTTACTACTTTGGTTGCACTTTGAATAATTCCTTTTTTTTTCTTGTGTCTAGATAATCTAGATTCTATTGGTTAAGGAATCTACAATCAACGATGAATAGAAAACGTAAAATAATAGAAAGAAGCGACACAAGAATTGATGTGGTTTGTCGCTACGTGTATATTAGTTATGTCTACGAATAGATAGAGAGAGATTACAGAGTTAGAGGTATGAGTGAGTAGGGTAGTAGGTATAATTTATATATACACCACGCTCTTCTAAACTCTTGGCCCAAAATCGTAAATATTGCAAATAACATAAATACAAATACAACTTAAGTTTTGGGGTTGTTGCCTTGTTATTTAAAAACTCTTTTTAGATTAACAACATTTTTATGTTTTGAGTGTGTAAATTTTGAATATGAAAATTTAAAAGGTAGAATTATATTAAAATGGCTAATAAATATTAGTTAATAAGTATAGTATTCATGTTTACGACTCAACTCGTTTTTCTTTTAAATTAAAATATGTATCAGGTAATGTATTAGAAATATATTATAGGAAACAAAATTATAATTAATAAATATTAACTTAAAACATTGATCAACTAGATATATTATCAAATACATTTTTGAAGAATTTATTAAATTACAATTCAATTTTTAAATCAGTTATCAAACACATATTCGAAAATGTGAAATATTACAATTCCTTATTTTCAAATTTCTGTTTTAAAATTGTCTACTTAACCAACCAAAAGTTTTTAGTTTAATTAGAAGTAAAATTAATTTCAGGTGGTCTTTAATTGCGGCACGATTACCTGGAAGAACGGATAATGAGATAAAGAACTACTGGAACACACACATAAAACGCAAACTCTACAACCGAGGAATCGACCCTCAGACGCATCGTCCATTGGTCAATAATAGTAGCACCGGCGACATTGACCGGCGACAGGAAGATTCAAACAGCAACAGCAGCAACAGTTGTTTGACGACAGAGGTGGAAGAAAATCCGCCATTGAATCTCAATCTAGAGCTCTCCATTGGCCTTCATCCCCATAACCCAATTACCAAAAACCCCCACGGAAAAGGGGAGGCTCCTGTTTTATTCCAATTTTGTGCACCACAAACAGAATTAGAAACTGAAACTTCCTCCTCCGTCCCCCATCTCTTTAGATATTACACATCATCCACTTCTTAATATTTTTATTTATATATATCTCCACATTTCTCTCACTTTTTCATTTCTCAACTTTTCACTCAACTTTTCGTCATTTGCCTATAACTATAATATGGTTTATTAGAGATATATAACATATGATCCAT CCTCCATGTTGGTGTTTTATTTATTTATTTCTGTTCTTCCAAATTTAAAATATGTACCATCCCATTTCATTCATCCACCCTTGTCTTCTTTTTTTCAGTCCTTTGACTCCACTCATTTAAATAAAAATCTCTTTGATCTTATTAATTTACAATACCACCCCCCCTCAAACTCCTAAAAATTTATTGAAATGGAAGGGTGGGATTGCAATTGAAAAATAAAAGAAGCCCCAAAGAGCAAAAAAAGAAAAGTAGTGATGGAGGGCACAAAAATAAAAATGAACTAAGAATTTAGAACCACTCAATTCATCTCACCAACCTGGTCAAACGTTCTCTATGTCTAAGATGCTGCCCGCTGCCCCCTGCCCGAGAATAACAACGTTAAAAGGAAGAAAGTCCCGAGTCAATTGCTTGTTTTCCTTTACCACCTCACCTCCATATATATATTATCACATAAATAATTTACACTTTAATTTTTTATTTTAATTTTTAATTTAAATATCTGTGTGTTCACCAACTCCCTTAGCTATTAGTTTCTTCCATCTCCATATATTTCTCTATCGCTCTCTCTTCTCACCAACTTCTATCTTCAAATAATAATTCCCATATTCCTTCAATTTATCAGTAGTGTGTTTGTGTTTCTATGGGCAGATCTCCTTGCTGTGAGAAACAACACACCAACAAAGGTGCATGGACCAAAGAAGAAGACCAACGTCTTATCAACTACATCCAAATCCACGGCGATGGTTGTTGGAGATCTCTCCCTAAAGCTGCTGGGTTGTTTCGGTGTGGTAAGAGTTGTCGGCTACGATGGATCAATTATCTCCGTCCAGATCTCAAGAGAGGGAATTTCACTCCTGAGGAAGATGAAATCATCATCAATCTCCATAGTCTACTTGGTAACAAGTGGTCTTTAATTGCGGCACGATTACCTGGAAGAACGGATAATGAGATAAAGAACTACTGGAACACACACATAAAACGCAAACTCTACAACCGAGGAATCGACCCTCAGACGCATCGTCCATTGGTCAATAATAGTAGCACCGGCGACATTGACCGGCGACAGGAAGATTCAAACAGCAACAGCAGCAACAGTTGTTTGACGACAGAGGTGGAAGAAAATCCGCCATTGAATCTCAATCTAGAGCTCTCCATTGGCCTTCATCCCCATAACCCAATTACCAAAAACCCCCACGGAAAAGGGGAGGCTCCTGTTTTATTCCAATTTTGTGCACCACAAACAGAATTAGAAACTGAAACTTCCTCCTCCGTCCCCCATCTCTTTAGATATTACACATCATCCACTTCTTAATATTTTTATTTATATATATCTCCACATTTCTCTCACTTTTTCATTTCTCAACTTTTCACTCAACTTTTCGTCATTTGCCTATAACTATAATATGGTTTATTAGAGATATATAACATATGATCCAT ATGGGCAGATCTCCTTGCTGTGAGAAACAACACACCAACAAAGGTGCATGGACCAAAGAAGAAGACCAACGTCTTATCAACTACATCCAAATCCACGGCGATGGTTGTTGGAGATCTCTCCCTAAAGCTGCTGGGTTGTTTCGGTGTGGTAAGAGTTGTCGGCTACGATGGATCAATTATCTCCGTCCAGATCTCAAGAGAGGGAATTTCACTCCTGAGGAAGATGAAATCATCATCAATCTCCATAGTCTACTTGGTAACAAGTGGTCTTTAATTGCGGCACGATTACCTGGAAGAACGGATAATGAGATAAAGAACTACTGGAACACACACATAAAACGCAAACTCTACAACCGAGGAATCGACCCTCAGACGCATCGTCCATTGGTCAATAATAGTAGCACCGGCGACATTGACCGGCGACAGGAAGATTCAAACAGCAACAGCAGCAACAGTTGTTTGACGACAGAGGTGGAAGAAAATCCGCCATTGAATCTCAATCTAGAGCTCTCCATTGGCCTTCATCCCCATAACCCAATTACCAAAAACCCCCACGGAAAAGGGGAGGCTCCTGTTTTATTCCAATTTTGTGCACCACAAACAGAATTAGAAACTGAAACTTCCTCCTCCGTCCCCCATCTCTTTAGATATTACACATCATCCACTTCTTAA MGRSPCCEKQHTNKGAWTKEEDQRLINYIQIHGDGCWRSLPKAAGLFRCGKSCRLRWINYLRPDLKRGNFTPEEDEIIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYNRGIDPQTHRPLVNNSSTGDIDRRQEDSNSNSSNSCLTTEVEENPPLNLNLELSIGLHPHNPITKNPHGKGEAPVLFQFCAPQTELETETSSSVPHLFRYYTSSTS Homology
BLAST of Clc02G00160 vs. NCBI nr
Match: XP_038901941.1 (myb-related protein 330-like [Benincasa hispida]) HSP 1 Score: 449.5 bits (1155), Expect = 1.7e-122 Identity = 211/223 (94.62%), Postives = 215/223 (96.41%), Query Frame = 0
BLAST of Clc02G00160 vs. NCBI nr
Match: XP_004147356.2 (myb-related protein 330 [Cucumis sativus] >KAE8652001.1 hypothetical protein Csa_016956 [Cucumis sativus]) HSP 1 Score: 416.0 bits (1068), Expect = 2.0e-112 Identity = 201/230 (87.39%), Postives = 210/230 (91.30%), Query Frame = 0
BLAST of Clc02G00160 vs. NCBI nr
Match: XP_008460839.1 (PREDICTED: myb-related protein 330-like [Cucumis melo] >KAA0063091.1 myb-related protein 330-like protein [Cucumis melo var. makuwa] >TYK02042.1 myb-related protein 330-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 416.0 bits (1068), Expect = 2.0e-112 Identity = 200/229 (87.34%), Postives = 211/229 (92.14%), Query Frame = 0
BLAST of Clc02G00160 vs. NCBI nr
Match: XP_022932028.1 (transcription factor MYB8-like [Cucurbita moschata]) HSP 1 Score: 349.7 bits (896), Expect = 1.8e-92 Identity = 167/222 (75.23%), Postives = 182/222 (81.98%), Query Frame = 0
BLAST of Clc02G00160 vs. NCBI nr
Match: XP_023512167.1 (myb-related protein 308-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 346.7 bits (888), Expect = 1.5e-91 Identity = 170/225 (75.56%), Postives = 187/225 (83.11%), Query Frame = 0
BLAST of Clc02G00160 vs. ExPASy Swiss-Prot
Match: P81395 (Myb-related protein 330 OS=Antirrhinum majus OX=4151 GN=MYB330 PE=2 SV=1) HSP 1 Score: 264.6 bits (675), Expect = 1.0e-69 Identity = 131/173 (75.72%), Postives = 136/173 (78.61%), Query Frame = 0
BLAST of Clc02G00160 vs. ExPASy Swiss-Prot
Match: Q9SZP1 (Transcription repressor MYB4 OS=Arabidopsis thaliana OX=3702 GN=MYB4 PE=1 SV=1) HSP 1 Score: 259.6 bits (662), Expect = 3.2e-68 Identity = 120/157 (76.43%), Postives = 133/157 (84.71%), Query Frame = 0
BLAST of Clc02G00160 vs. ExPASy Swiss-Prot
Match: P81393 (Myb-related protein 308 OS=Antirrhinum majus OX=4151 GN=MYB308 PE=2 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 9.4e-68 Identity = 126/184 (68.48%), Postives = 142/184 (77.17%), Query Frame = 0
BLAST of Clc02G00160 vs. ExPASy Swiss-Prot
Match: Q38851 (Transcription repressor MYB6 OS=Arabidopsis thaliana OX=3702 GN=MYB6 PE=1 SV=1) HSP 1 Score: 255.4 bits (651), Expect = 6.1e-67 Identity = 114/135 (84.44%), Postives = 123/135 (91.11%), Query Frame = 0
BLAST of Clc02G00160 vs. ExPASy Swiss-Prot
Match: F1B281 (MYB-like transcription factor 4 OS=Petunia hybrida OX=4102 GN=MYB4 PE=2 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 3.0e-66 Identity = 129/218 (59.17%), Postives = 153/218 (70.18%), Query Frame = 0
BLAST of Clc02G00160 vs. ExPASy TrEMBL
Match: A0A5A7VBL2 (Myb-related protein 330-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00240 PE=4 SV=1) HSP 1 Score: 416.0 bits (1068), Expect = 9.9e-113 Identity = 200/229 (87.34%), Postives = 211/229 (92.14%), Query Frame = 0
BLAST of Clc02G00160 vs. ExPASy TrEMBL
Match: A0A1S3CCV9 (myb-related protein 330-like OS=Cucumis melo OX=3656 GN=LOC103499594 PE=4 SV=1) HSP 1 Score: 416.0 bits (1068), Expect = 9.9e-113 Identity = 200/229 (87.34%), Postives = 211/229 (92.14%), Query Frame = 0
BLAST of Clc02G00160 vs. ExPASy TrEMBL
Match: A0A6J1F0H0 (transcription factor MYB8-like OS=Cucurbita moschata OX=3662 GN=LOC111438355 PE=4 SV=1) HSP 1 Score: 349.7 bits (896), Expect = 8.7e-93 Identity = 167/222 (75.23%), Postives = 182/222 (81.98%), Query Frame = 0
BLAST of Clc02G00160 vs. ExPASy TrEMBL
Match: A0A6J1I9R2 (transcription factor MYB8-like OS=Cucurbita maxima OX=3661 GN=LOC111472382 PE=4 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 1.7e-88 Identity = 167/230 (72.61%), Postives = 183/230 (79.57%), Query Frame = 0
BLAST of Clc02G00160 vs. ExPASy TrEMBL
Match: A0A6J1DY65 (transcription factor MYB8-like OS=Momordica charantia OX=3673 GN=LOC111025283 PE=4 SV=1) HSP 1 Score: 315.5 bits (807), Expect = 1.8e-82 Identity = 162/237 (68.35%), Postives = 183/237 (77.22%), Query Frame = 0
BLAST of Clc02G00160 vs. TAIR 10
Match: AT4G38620.1 (myb domain protein 4 ) HSP 1 Score: 259.6 bits (662), Expect = 2.3e-69 Identity = 120/157 (76.43%), Postives = 133/157 (84.71%), Query Frame = 0
BLAST of Clc02G00160 vs. TAIR 10
Match: AT4G09460.1 (myb domain protein 6 ) HSP 1 Score: 255.4 bits (651), Expect = 4.3e-68 Identity = 114/135 (84.44%), Postives = 123/135 (91.11%), Query Frame = 0
BLAST of Clc02G00160 vs. TAIR 10
Match: AT2G16720.1 (myb domain protein 7 ) HSP 1 Score: 253.1 bits (645), Expect = 2.1e-67 Identity = 111/143 (77.62%), Postives = 128/143 (89.51%), Query Frame = 0
BLAST of Clc02G00160 vs. TAIR 10
Match: AT4G34990.1 (myb domain protein 32 ) HSP 1 Score: 250.0 bits (637), Expect = 1.8e-66 Identity = 116/164 (70.73%), Postives = 133/164 (81.10%), Query Frame = 0
BLAST of Clc02G00160 vs. TAIR 10
Match: AT1G22640.1 (myb domain protein 3 ) HSP 1 Score: 248.8 bits (634), Expect = 4.0e-66 Identity = 111/133 (83.46%), Postives = 121/133 (90.98%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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