Sed0027035 (gene) Chayote v1

Overview


Name	Sed0027035
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 12
Location	LG01: 13222819 .. 13225111 (-)
RNA-Seq Expression	Sed0027035
Synteny	Sed0027035

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATCATCAAGCGCATCTTCTTCCCGGTTCTGGTACCTTCCTCTCATATCATTTAAATTCTTGCGCTAAACTTTTCGAATCACAAAAACTTTTATGGGGATTTCGCTCATCTTGTTTCAGATTCCTTGTTCATATGTTTGATTTTCTACTCAATATCGACGAATTTCCTCTTATGTTTATCGATGATTGCTTCTTACATTTTGCACAGAGTGAGCAATAATTTGTTTCGCAGGAAGCTTTTCGAAGTTTGATTCATGGATCCTCAACCCGAACCCGTCAGCTACGTCTGTGGAGGTACGCTTGTTGTGTTCATTGATTCCATGTTTCAAAATCTGCAGAATATTTAGGTATTAGGTTCTGTAATTGGGTGCATATCTTAATCAGTATCAAGTTACTTTGATTACGTTGAACCATCGGGAGTTTAGAACTTAGAAGTTTGTTTATATGAGTCTTAGAAACTTGCACTAAGTATTCACCTGTATTACTATATTTGTATCCTGAGAACTGTAAAATTGGTGTAGATTGTGGAATGGAGAACACTCTGAAGCCGGGCGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCAGTAAGATATATCATGTTTTTTCTTTTCCTGAAAGTTATTTCAGACTTTCAAATGATTGACCATAAATTTAGGGGGATTTAACACAACCATGAAAATAAGGTCAAACACTGTGATTGATTGCTTTGGGCAGCTTTGTAATTAGTTGGTCTAATTATAGAGGTTGAATGGTCCCCTTGTGCTTTGAAGTTGTGCTCCCCTCAAGAATCCCAAGTTCGAGATTCACCTATGATATCAATTTGTAGATACGTCGTGTGCCTCCATTGTTTCGATGTCTCTCTGTCGGGTGTGGTTACCTCGAGTATAATGGAGAGAATCTCTGATTTTCGGATTTCAAAGGTTGATTGCATTGCGATCGAGATCCCACTTGTCTTCTTCATGATCTTTAATCTTCTATTTACCTTTTTTAAAGTTCATTTGAAAAACCATAAAATTGATCATCTCAAGAAATCATGTTATCAACTCAGTTTGTTATTATTTGTATAAATGCTACCCTATCTCCCATAATTATAGTTTTTCCTCCTTCCTCTCTAATTGAAGGGGTCTGTTGTAATTTCCTCCTTGGACCCTTTCTTCTGCATTTTCATTGATCTATTAAATGGTTTTTTGTTTTTTAAACTCAATTTTGCAACTGTCGATTATCAGGATGTAGTGGTTTGGTTAGTATAATGCTGTAACATGCTGTATTTGAGCATTTGTTCAACTTAATCTTTGATGGTAATTAACTTGCAAAAATGTTTCTGGGTGGTATCTCATTAGATAGTATGCTATTCCACCTCAAATCCTATTGACTCTGAACAAATCCTATTGACTCTGAAAGGAGTAGATAACTGTCTTCTAAAGGTTGTGGGGCCCCACTTGTTCTGTTCTATGTGAGATCCCCTCAACATGCCCCTCTCAAGATGGTCTCTTTAGATTTATCACTCTTGAATCGAATTTCAAATTTATTTTTATTGAACCAAATATCCATTTAAATCAATTGACAACGAGGAGAGTAGCTTACCTTACTTATAAAGGTTTTGAGGTTTCTACCTTACTTATAAAGGTTTTGAGGTTTCTTCACTTTTTCAAAGTGGAATCCTCAACAATCCTTGCCTTCCTTATGACTTGGGATGCTCTCTAACAAATCTTGACTTTAGATTAAATTAAGACTCTCTATGGGGAATGATGCATCTGTCAATTATCTTTGTTTTGCTTTATTCATAGTTACTGGATGACCCCTGTCATGTAGTTTAGTTTTGTCACTGTTTTTTTATGGCTTTGTTTGATGTGGGTTGGTGTTTTGTATTGTGAAAATATGAAAAGAAATTTCTTCTATACATTTAAGAAAGCTTGCAACGCCTATTACTTTCTGTGTTCTTGATATTTATTTACTTATTTTCGAATTTGAAGCTGATCCGAATTGTTGCTGTTACTGCAGTTGTTCAGTATGAGGCACGCTGAAATGCTTATTCTGGCGATGGACTTTCAGTATCATTGAATATTTTGTAAGTCTCTTTTAGTTAAAACAAAAGTAGAACTCAATGTCTCGAAGACTTCATCGTTATACAAACATGTAATATTGCTGCCATTATTATTGCATGTAGACCTACAGAACTCAATCAACATCCATCCGTGAAACCAAATGGTTTTTTTTCATTTACGGTGAATATTTGCCACACTTTAAAACTCCCAAATTTTTG

mRNA sequence

CAATCATCAAGCGCATCTTCTTCCCGGTTCTGGAAGCTTTTCGAAGTTTGATTCATGGATCCTCAACCCGAACCCGTCAGCTACGTCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCCGGGCGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCATTGTTCAGTATGAGGCACGCTGAAATGCTTATTCTGGCGATGGACTTTCAGTATCATTGAATATTTTGTAAGTCTCTTTTAGTTAAAACAAAAGTAGAACTCAATGTCTCGAAGACTTCATCGTTATACAAACATGTAATATTGCTGCCATTATTATTGCATGTAGACCTACAGAACTCAATCAACATCCATCCGTGAAACCAAATGGTTTTTTTTCATTTACGGTGAATATTTGCCACACTTTAAAACTCCCAAATTTTTG

Coding sequence (CDS)

ATGGATCCTCAACCCGAACCCGTCAGCTACGTCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCCGGGCGATGTTATACAGTGCCGGGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCATTGTTCAGTATGAGGCACGCTGA

Protein sequence

MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

Homology

[Close]

BLAST of Sed0027035 vs. NCBI nr
Match: XP_003534102.1 (DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max] >XP_003548293.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max] >XP_006448405.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Citrus clementina] >XP_007152540.1 hypothetical protein PHAVU_004G138700g [Phaseolus vulgaris] >XP_010265372.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Nelumbo nucifera] >XP_010279451.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Nelumbo nucifera] >XP_010279452.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Nelumbo nucifera] >XP_012093117.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Jatropha curcas] >XP_017439147.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna angularis] >XP_018827042.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Juglans regia] >XP_018849286.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Juglans regia] >XP_020212630.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Cajanus cajan] >XP_020532481.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Jatropha curcas] >XP_024022128.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Morus notabilis] >XP_024022129.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Morus notabilis] >XP_024467616.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Populus trichocarpa] >XP_024950019.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Citrus sinensis] >XP_027359347.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Abrus precatorius] >XP_027923604.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna unguiculata] >XP_028179867.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine soja] >XP_028206203.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine soja] >XP_028779964.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Prosopis alba] >XP_028792622.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Prosopis alba] >XP_031251942.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Pistacia vera] >XP_034903620.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Populus alba] >XP_037491555.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Jatropha curcas] >XP_040995656.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Juglans microcarpa x Juglans regia] >XP_040998615.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Juglans microcarpa x Juglans regia] >XP_042486250.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Macadamia integrifolia] >XP_042513756.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Macadamia integrifolia] >XP_042513758.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Macadamia integrifolia] >XP_042513759.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Macadamia integrifolia] >XP_042513760.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Macadamia integrifolia] >XP_042965036.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Carya illinoinensis] >KAE9608572.1 putative RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 [Lupinus albus] >KAG5255376.1 DNA-directed RNA polymerase [Salix suchowensis] >OAY39281.1 hypothetical protein MANES_10G081901v8 [Manihot esculenta] >OIV97068.1 hypothetical protein TanjilG_14613 [Lupinus angustifolius] >OVA05531.1 RNA polymerase archaeal subunit P/eukaryotic subunit RPC10 [Macleaya cordata] >BAU02571.1 hypothetical protein VIGAN_11212200 [Vigna angularis var. angularis])

HSP 1 Score: 113.6 bits (283), Expect = 5.0e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Sed0027035 vs. NCBI nr
Match: XP_014507408.2 (DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna radiata var. radiata])

HSP 1 Score: 113.6 bits (283), Expect = 5.0e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 35 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 85

[Close]

BLAST of Sed0027035 vs. NCBI nr
Match: XP_021658712.1 (DNA-directed RNA polymerases II, IV and V subunit 12 [Hevea brasiliensis] >XP_030472345.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Syzygium oleosum] >XP_030521604.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Rhodamnia argentea] >XP_030548598.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Rhodamnia argentea] >XP_039160266.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Eucalyptus grandis])

HSP 1 Score: 113.2 bits (282), Expect = 6.5e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRI+QYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIIQYEAR 51

[Close]

BLAST of Sed0027035 vs. NCBI nr
Match: XP_020244053.1 (DNA-directed RNA polymerases II, IV and V subunit 12 [Asparagus officinalis])

HSP 1 Score: 112.8 bits (281), Expect = 8.5e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYLCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Sed0027035 vs. NCBI nr
Match: RZC92788.1 (hypothetical protein C5167_029517 [Papaver somniferum])

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1   MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
           MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRT+RIVQYEAR
Sbjct: 54  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTKRIVQYEAR 104

[Close]

BLAST of Sed0027035 vs. ExPASy Swiss-Prot
Match: Q9FLM8 (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana OX=3702 GN=NRPB12 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.3e-22
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDP PEPV+YVCGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1  MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51

[Close]

BLAST of Sed0027035 vs. ExPASy Swiss-Prot
Match: Q3ZBC0 (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus OX=9913 GN=POLR2K PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-12
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 3  PQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          P+ +P+ Y+CG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]

BLAST of Sed0027035 vs. ExPASy Swiss-Prot
Match: P53803 (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens OX=9606 GN=POLR2K PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-12
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 3  PQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          P+ +P+ Y+CG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]

BLAST of Sed0027035 vs. ExPASy Swiss-Prot
Match: Q63871 (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus OX=10090 GN=Polr2k PE=3 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-12
Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 3  PQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          P+ +P+ Y+CG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58

[Close]

BLAST of Sed0027035 vs. ExPASy Swiss-Prot
Match: P48011 (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc10 PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 4.8e-12
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 3  PQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          P+P  + Y+C DCG  NT++  +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct: 15 PRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63

[Close]

BLAST of Sed0027035 vs. ExPASy TrEMBL
Match: A0A6A5MJT3 (Putative RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 OS=Lupinus albus OX=3870 GN=Lal_00020716 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Sed0027035 vs. ExPASy TrEMBL
Match: A0A1U8AQX5 (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Nelumbo nucifera OX=4432 GN=LOC104603134 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Sed0027035 vs. ExPASy TrEMBL
Match: C6T1P2 (Uncharacterized protein OS=Glycine max OX=3847 GN=100790164 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Sed0027035 vs. ExPASy TrEMBL
Match: A0A2I4F5W9 (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Juglans regia OX=51240 GN=LOC108995861 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1  MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51

[Close]

BLAST of Sed0027035 vs. ExPASy TrEMBL
Match: A0A1S3UMW8 (DNA-directed RNA polymerases II, IV and V subunit 12 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767094 PE=3 SV=2)

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-22
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDPQPEPVSY+CGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 35 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 85

[Close]

BLAST of Sed0027035 vs. TAIR 10
Match: AT5G41010.1 (DNA directed RNA polymerase, 7 kDa subunit )

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-23
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 1  MDPQPEPVSYVCGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
          MDP PEPV+YVCGDCG ENTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 1  MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51

[Close]

BLAST of Sed0027035 vs. TAIR 10
Match: AT1G53690.1 (DNA directed RNA polymerase, 7 kDa subunit )

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-12
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 2  DPQPEP-VSYVCGDCGMENTLKPGDVIQCRECGYRILYKKR 42
          D QPE  V YVCGDCG EN LK GDV QCR+CG+RILYKKR
Sbjct: 10 DKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKR 50

The following BLAST results are available for this feature:

BLAST of Sed0027035 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_003534102.1	5.0e-22	98.04	DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max] >XP_003548293...	[more]
XP_014507408.2	5.0e-22	98.04	DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna radiata var. radiata...	[more]
XP_021658712.1	6.5e-22	96.08	DNA-directed RNA polymerases II, IV and V subunit 12 [Hevea brasiliensis] >XP_03...	[more]
XP_020244053.1	8.5e-22	98.04	DNA-directed RNA polymerases II, IV and V subunit 12 [Asparagus officinalis]	[more]
RZC92788.1	1.1e-21	96.08	hypothetical protein C5167_029517 [Papaver somniferum]	[more]

BLAST of Sed0027035 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLM8	2.3e-22	90.20	DNA-directed RNA polymerases II, IV and V subunit 12 OS=Arabidopsis thaliana OX=...	[more]
Q3ZBC0	2.2e-12	57.14	DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus OX=9913...	[more]
P53803	2.2e-12	57.14	DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens OX=96...	[more]
Q63871	2.2e-12	57.14	DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus OX=10...	[more]
P48011	4.8e-12	55.10	DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyce...	[more]

BLAST of Sed0027035 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A5MJT3	2.4e-22	98.04	Putative RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 OS=Lupinus ...	[more]
A0A1U8AQX5	2.4e-22	98.04	DNA-directed RNA polymerases II, IV and V subunit 12 OS=Nelumbo nucifera OX=4432...	[more]
C6T1P2	2.4e-22	98.04	Uncharacterized protein OS=Glycine max OX=3847 GN=100790164 PE=2 SV=1	[more]
A0A2I4F5W9	2.4e-22	98.04	DNA-directed RNA polymerases II, IV and V subunit 12 OS=Juglans regia OX=51240 G...	[more]
A0A1S3UMW8	2.4e-22	98.04	DNA-directed RNA polymerases II, IV and V subunit 12 OS=Vigna radiata var. radia...	[more]

BLAST of Sed0027035 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41010.1	1.6e-23	90.20	DNA directed RNA polymerase, 7 kDa subunit	[more]
AT1G53690.1	2.2e-12	75.61	DNA directed RNA polymerase, 7 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006591	RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4	SMART	SM00659	rpolcxc3	coord: 8..51 e-value: 5.5E-25 score: 99.0
IPR006591	RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4	PFAM	PF03604	DNA_RNApol_7kD	coord: 10..41 e-value: 3.4E-17 score: 61.8
None	No IPR available	GENE3D	2.20.28.30	RNA polymerase ii, chain L	coord: 1..51 e-value: 1.1E-28 score: 100.5
None	No IPR available	PANTHER	PTHR12056:SF3	BNAA06G00770D PROTEIN	coord: 1..51
IPR039747	DNA-directed RNA polymerases I, II, and III subunit RPABC4	PANTHER	PTHR12056	DNA-DIRECTED RNA POLYMERASES I, II, AND III	coord: 1..51
IPR029040	RNA polymerase subunit RPABC4/transcription elongation factor Spt4	SUPERFAMILY	63393	RNA polymerase subunits	coord: 7..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0027035.1	Sed0027035.1	mRNA
Sed0027035.2	Sed0027035.2	mRNA
Sed0027035.3	Sed0027035.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding