Sed0017919.1 (mRNA) Chayote v1

Overview


Name	Sed0017919.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	Dynein light chain 1, cytoplasmic
Location	LG01: 13607660 .. 13608522 (+)
Sequence length	768
RNA-Seq Expression	Sed0017919.1
Synteny	Sed0017919.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAACCCACCAATTCTCTGCCCATTTTAGCACATCCTGAACCTGACTTTCCTCCCCTTGAACCCCATCTCAAAACCCCTCCCTCTGATTCAATGCCTAATCACTCCCCACCTCCAAAGCTTGAACCTTCCATGGCTTCTGCTGCTGCTTCTAAGCCCTTTCCATTGTCCAAACACATCCCATTTTCCAGAATGAGCTCAAACCCTCCTTCTATGCTCAAATCAAAACCCCATCTACAAAAAGTTGCTTCTAGTGGGGATGAGAAATTGAGTGAGATGTGTAGAGAGTTTGATGAGAAGAAGGAAGCTAATGATGGGAAAGCTCTGTGTCTTGTGGTGAAGGAGAAGAAAGATTTGAAAGAGCCTCATAAACTGCATAGGCTTGAAAGTTTGAGACCAACAGTTTCTTTACTTCCAAAGGGTGGGAGAGGACAGTCCTTGGTTGGTTCCCTTGTTGAATTGGGTGACATATTTGCAAACAATGGTGTCAAAGTGGTTTCTGTTGACATGCCACCAGCTATGCAGATTCATGCTGTGGTTTGTGCAAGAAAGGCTCATGATAGTATGGAGAAGTTCACTTCTAAAACTCTTGCTTTATCTCTCAAAAGGGTAATTAGTTTAAGGGATTTATCTGCAATATTTGTAGTTTTTAGAATGATTAGAGTTAGCTAATAAGTTTTCTGTGTTTGTTTGTGATGTTTTAGGAATTTGATGGGGTCTATGGTCCGGCCTGGCACTGCATTGTGGGGACAAGTTTTGGGTCTTTTGTGACTCATTCAGTTGGTGGTTTCTTGTATTTCTCAATGGACCAAAAGCTGTATGTTCTACTGTTCAAAACTTCAGTACAAAAAGCTGATTGA

mRNA sequence

ATGGCAAAACCCACCAATTCTCTGCCCATTTTAGCACATCCTGAACCTGACTTTCCTCCCCTTGAACCCCATCTCAAAACCCCTCCCTCTGATTCAATGCCTAATCACTCCCCACCTCCAAAGCTTGAACCTTCCATGGCTTCTGCTGCTGCTTCTAAGCCCTTTCCATTGTCCAAACACATCCCATTTTCCAGAATGAGCTCAAACCCTCCTTCTATGCTCAAATCAAAACCCCATCTACAAAAAGTTGCTTCTAGTGGGGATGAGAAATTGAGTGAGATGTGTAGAGAGTTTGATGAGAAGAAGGAAGCTAATGATGGGAAAGCTCTGTGTCTTGTGGTGAAGGAGAAGAAAGATTTGAAAGAGCCTCATAAACTGCATAGGCTTGAAAGTTTGAGACCAACAGTTTCTTTACTTCCAAAGGGTGGGAGAGGACAGTCCTTGGTTGGTTCCCTTGTTGAATTGGGTGACATATTTGCAAACAATGGTGTCAAAGTGGTTTCTGTTGACATGCCACCAGCTATGCAGATTCATGCTGTGGTTTGTGCAAGAAAGGCTCATGATAGTATGGAGAAGTTCACTTCTAAAACTCTTGCTTTATCTCTCAAAAGGGAATTTGATGGGGTCTATGGTCCGGCCTGGCACTGCATTGTGGGGACAAGTTTTGGGTCTTTTGTGACTCATTCAGTTGGTGGTTTCTTGTATTTCTCAATGGACCAAAAGCTGTATGTTCTACTGTTCAAAACTTCAGTACAAAAAGCTGATTGA

Coding sequence (CDS)

ATGGCAAAACCCACCAATTCTCTGCCCATTTTAGCACATCCTGAACCTGACTTTCCTCCCCTTGAACCCCATCTCAAAACCCCTCCCTCTGATTCAATGCCTAATCACTCCCCACCTCCAAAGCTTGAACCTTCCATGGCTTCTGCTGCTGCTTCTAAGCCCTTTCCATTGTCCAAACACATCCCATTTTCCAGAATGAGCTCAAACCCTCCTTCTATGCTCAAATCAAAACCCCATCTACAAAAAGTTGCTTCTAGTGGGGATGAGAAATTGAGTGAGATGTGTAGAGAGTTTGATGAGAAGAAGGAAGCTAATGATGGGAAAGCTCTGTGTCTTGTGGTGAAGGAGAAGAAAGATTTGAAAGAGCCTCATAAACTGCATAGGCTTGAAAGTTTGAGACCAACAGTTTCTTTACTTCCAAAGGGTGGGAGAGGACAGTCCTTGGTTGGTTCCCTTGTTGAATTGGGTGACATATTTGCAAACAATGGTGTCAAAGTGGTTTCTGTTGACATGCCACCAGCTATGCAGATTCATGCTGTGGTTTGTGCAAGAAAGGCTCATGATAGTATGGAGAAGTTCACTTCTAAAACTCTTGCTTTATCTCTCAAAAGGGAATTTGATGGGGTCTATGGTCCGGCCTGGCACTGCATTGTGGGGACAAGTTTTGGGTCTTTTGTGACTCATTCAGTTGGTGGTTTCTTGTATTTCTCAATGGACCAAAAGCTGTATGTTCTACTGTTCAAAACTTCAGTACAAAAAGCTGATTGA

Protein sequence

MAKPTNSLPILAHPEPDFPPLEPHLKTPPSDSMPNHSPPPKLEPSMASAAASKPFPLSKHIPFSRMSSNPPSMLKSKPHLQKVASSGDEKLSEMCREFDEKKEANDGKALCLVVKEKKDLKEPHKLHRLESLRPTVSLLPKGGRGQSLVGSLVELGDIFANNGVKVVSVDMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYVLLFKTSVQKAD

Homology

[Close]

BLAST of Sed0017919.1 vs. NCBI nr
Match: KAG7019845.1 (hypothetical protein SDJN02_18810, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 337.4 bits (864), Expect = 1.1e-88
Identity = 197/289 (68.17%), Postives = 218/289 (75.43%), Query Frame = 0


Query: 1   MAKPTNSLPILAHPEPDFPPLEPHLKTPPSDSMP-NHSPPPKLEPSMASAA---ASKPFP 60
           MAKPTN L ILA P+PD PPL+P  + PPS SM  NHS P KL+ ++A+AA      P P
Sbjct: 1   MAKPTNQLRILAPPDPDSPPLKPPFRAPPSASMANNHSTPAKLDSAIAAAAPPPPPNPSP 60

Query: 61  LSKHIPFSRM------------SSNP------PSMLKSKPHLQKVASSGDEKLSEMCRE- 120
           LS HIPFS++            +SNP      P+M+KSKPHLQK+AS GDEKLS++C+E 
Sbjct: 61  LSNHIPFSKLHRQPGFSSQKPKNSNPPPPLTVPTMVKSKPHLQKIASGGDEKLSKLCKEM 120

Query: 121 -----FDEKKEAN-----DGKALCLVVKEK-KDLKEPHKLHRLESLRPTVSLLPKGGRGQ 180
                FDEKKEAN     D KAL LVVKEK K+LKEP K H L +LRPTVSLL K GR +
Sbjct: 121 GTKKFFDEKKEANKGVDDDSKALYLVVKEKEKELKEPQKGHGLHTLRPTVSLLRKDGRRR 180

Query: 181 SLVGSLVELGDIFANNGVKVVSVDMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKREF 240
           SL    VEL DI A NGVKVVSVDMPPAMQIHAV CARKAHDSMEKFTSKTLALSLKREF
Sbjct: 181 SLADPQVELADILAKNGVKVVSVDMPPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREF 240

Query: 241 DGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYVLLFKTSVQKAD 256
           D VYGPAWHCIVG SFGSFVTHSVGGFLYFSMDQKLY+LLFKTSVQ+AD
Sbjct: 241 DSVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD 289

[Close]

BLAST of Sed0017919.1 vs. NCBI nr
Match: XP_023000852.1 (uncharacterized protein LOC111495174 [Cucurbita maxima])

HSP 1 Score: 337.0 bits (863), Expect = 1.4e-88
Identity = 196/287 (68.29%), Postives = 218/287 (75.96%), Query Frame = 0


Query: 1   MAKPTNSLPILAHPEPDFPPLEPHLKTPPSDSMP-NHSPPPKLEPSMASAAA-SKPFPLS 60
           MAKPTN L ILA P+PD PPL+P  + PPS SM  NHS P KL+ ++A+A++   P PLS
Sbjct: 1   MAKPTNQLRILAPPDPDSPPLKPPFRAPPSASMANNHSTPAKLDSAIAAASSPPNPSPLS 60

Query: 61  KHIPFSRM------------SSNP------PSMLKSKPHLQKVASSGDEKLSEMCRE--- 120
            HIPFS +            +SNP      P+M+KSKPHLQK+AS GDEKLS++C+E   
Sbjct: 61  NHIPFSELHRQPGCLSQKPKNSNPPPSLTVPTMVKSKPHLQKIASGGDEKLSKLCKEMGT 120

Query: 121 ---FDEKKEAN-----DGKALCLVVKEK-KDLKEPHKLHRLESLRPTVSLLPKGGRGQSL 180
              FDEKKEAN     D KAL LVVKEK K+LKEP K H L +LRPTVSLL K GR +SL
Sbjct: 121 KKFFDEKKEANKGVDDDSKALYLVVKEKEKELKEPQKGHGLHTLRPTVSLLRKDGRRRSL 180

Query: 181 VGSLVELGDIFANNGVKVVSVDMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKREFDG 240
               VEL DI A NGVKVVSVDMPPAMQIHAV CARKAHDSMEKFTSKTLALSLKREFD 
Sbjct: 181 ADPQVELADILAKNGVKVVSVDMPPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDS 240

Query: 241 VYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYVLLFKTSVQKAD 256
           VYGPAWHCIVG SFGSFVTHSVGGFLYFSMDQKLY+LLFKTSVQ+AD
Sbjct: 241 VYGPAWHCIVGKSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD 287

[Close]

BLAST of Sed0017919.1 vs. NCBI nr
Match: XP_022924012.1 (uncharacterized protein LOC111431561 [Cucurbita moschata])

HSP 1 Score: 335.9 bits (860), Expect = 3.1e-88
Identity = 196/288 (68.06%), Postives = 217/288 (75.35%), Query Frame = 0


Query: 1   MAKPTNSLPILAHPEPDFPPLEPHLKTPPSDSMP-NHSPPPKLEPSMASAA--ASKPFPL 60
           MAKPTN L ILA P+PD PPL+P  + PPS SM  NHS P KL+ ++A+AA     P PL
Sbjct: 1   MAKPTNQLRILAPPDPDSPPLKPPFRAPPSASMANNHSTPAKLDSAIAAAAPPPPNPSPL 60

Query: 61  SKHIPFSRM------------SSNPP------SMLKSKPHLQKVASSGDEKLSEMCRE-- 120
           S HIPFS++            + NPP      +M+KSKPHLQK+AS GDEKLS++C+E  
Sbjct: 61  SNHIPFSKLHRQSDFSSQKPKNPNPPPPLTVSTMVKSKPHLQKIASGGDEKLSKLCKEMG 120

Query: 121 ----FDEKKEAN-----DGKALCLVVKEK-KDLKEPHKLHRLESLRPTVSLLPKGGRGQS 180
               FDEKKEAN     D KAL LVVKEK K+LKEP K H L +LRPTVSLL K GR +S
Sbjct: 121 TKKFFDEKKEANKGVNDDSKALYLVVKEKEKELKEPQKGHGLHTLRPTVSLLRKDGRRRS 180

Query: 181 LVGSLVELGDIFANNGVKVVSVDMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKREFD 240
           L    VEL DI A NGVKVVSVDMPPAMQIHAV CARKAHDSMEKFTSKTLALSLKREFD
Sbjct: 181 LADPQVELADILAKNGVKVVSVDMPPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFD 240

Query: 241 GVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYVLLFKTSVQKAD 256
            VYGPAWHCIVG SFGSFVTHSVGGFLYFSMDQKLY+LLFKTSVQ+AD
Sbjct: 241 SVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD 288

[Close]

BLAST of Sed0017919.1 vs. NCBI nr
Match: XP_023520376.1 (uncharacterized protein LOC111783690 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.0 bits (855), Expect = 1.2e-87
Identity = 195/287 (67.94%), Postives = 217/287 (75.61%), Query Frame = 0


Query: 1   MAKPTNSLPILAHPEPDFPPLEPHLKTPPSDSMP-NHSPPPKLEPSMASAA-ASKPFPLS 60
           MAKPTN L ILA P+PD PPL+P  + PPS SM  NHS P KL+ ++A+A+    P PLS
Sbjct: 1   MAKPTNQLRILAPPDPDSPPLKPPFRAPPSASMANNHSTPAKLDSAIAAASPPPNPSPLS 60

Query: 61  KHIPFSRM------------SSNPP------SMLKSKPHLQKVASSGDEKLSEMCRE--- 120
            HIPFS++            +SNPP      +M+KSKPHLQK+AS  DEKLS++C+E   
Sbjct: 61  NHIPFSKLHRQPGFSSQKPKNSNPPPALTVSAMVKSKPHLQKIASGEDEKLSKLCKEMGT 120

Query: 121 ---FDEKKEAN-----DGKALCLVVKEK-KDLKEPHKLHRLESLRPTVSLLPKGGRGQSL 180
              FDEKKEAN     D KAL LVVKEK K+LKEP K H L +LRPTVSLL K GR +SL
Sbjct: 121 KKFFDEKKEANKGVDDDSKALYLVVKEKEKELKEPQKGHGLHTLRPTVSLLRKDGRRRSL 180

Query: 181 VGSLVELGDIFANNGVKVVSVDMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKREFDG 240
               VEL DI A NGVKVVSVDMPPAMQIHAV CARKAHDSMEKFTSKTLALSLKREFD 
Sbjct: 181 ADPQVELADILAKNGVKVVSVDMPPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDS 240

Query: 241 VYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYVLLFKTSVQKAD 256
           VYGPAWHCIVG SFGSFVTHSVGGFLYFSMDQKLY+LLFKTSVQ+AD
Sbjct: 241 VYGPAWHCIVGKSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD 287

[Close]

BLAST of Sed0017919.1 vs. NCBI nr
Match: KAG6584250.1 (hypothetical protein SDJN03_20182, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 332.0 bits (850), Expect = 4.4e-87
Identity = 195/288 (67.71%), Postives = 216/288 (75.00%), Query Frame = 0


Query: 1   MAKPTNSLPILAHPEPDFPPLEPHLKTPPSDSMP-NHSPPPKLEPSMASAA--ASKPFPL 60
           MAKPTN L ILA P+PD P L+P  + PPS SM  NHS P KL+ ++A+AA     P PL
Sbjct: 1   MAKPTNQLRILAPPDPDSPLLKPPFRAPPSASMANNHSTPAKLDSAIAAAAPPPPNPSPL 60

Query: 61  SKHIPFSRM------------SSNPP------SMLKSKPHLQKVASSGDEKLSEMCRE-- 120
           S HIPFS++            + NPP      +M+KSKPHLQK+AS GDEKLS++C+E  
Sbjct: 61  SNHIPFSKLHRQPGFSSQKPKNPNPPPPLTVSTMVKSKPHLQKIASGGDEKLSKLCKEMG 120

Query: 121 ----FDEKKEAN-----DGKALCLVVKEK-KDLKEPHKLHRLESLRPTVSLLPKGGRGQS 180
               FDEKKEAN     D KAL LVVKEK K+LKEP K H L +LRPTVSLL K GR +S
Sbjct: 121 TKKFFDEKKEANKGVDDDSKALYLVVKEKEKELKEPQKGHGLHTLRPTVSLLRKDGRRRS 180

Query: 181 LVGSLVELGDIFANNGVKVVSVDMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKREFD 240
           L    VEL DI A NGVKVVSVDMPPAMQIHAV CARKAHDSMEKFTSKTLALSLKREFD
Sbjct: 181 LADPQVELADILAKNGVKVVSVDMPPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFD 240

Query: 241 GVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYVLLFKTSVQKAD 256
            VYGPAWHCIVG SFGSFVTHSVGGFLYFSMDQKLY+LLFKTSVQ+AD
Sbjct: 241 SVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD 288

[Close]

BLAST of Sed0017919.1 vs. ExPASy Swiss-Prot
Match: Q86A88 (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.4e-13
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 164 VKVVSVDMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFG 223
           + V + DMP  MQ  A  C  KA +  E    + +A+ +K+EFD  Y P WHCIVG SFG
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFE--ETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFG 67

Query: 224 SFVTHSVGGFLYFSMDQKLYVLLFK 249
           SFVTH    F+YF+++ K  VLLFK
Sbjct: 68  SFVTHETKNFIYFNIN-KHSVLLFK 89

[Close]

BLAST of Sed0017919.1 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-13
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 166 VVSVDMPPAMQIHAVVCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGS 225
           + + DMP  MQ  AV CA +A   +EKF   K +A  +K+EFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMPEDMQQDAVDCATQA---LEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 226 FVTHSVGGFLYFSMDQKLYVLLFKT 250
           +VTH    F+YF + Q + VLLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAVLLFKS 88

[Close]

BLAST of Sed0017919.1 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.4e-12
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 166 VVSVDMPPAMQIHAVVCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGS 225
           + + DM   MQ  AV CA +A   MEK+   K +A  +K+EFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 226 FVTHSVGGFLYFSMDQKLYVLLFKT 250
           +VTH    F+YF + Q + +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of Sed0017919.1 vs. ExPASy Swiss-Prot
Match: Q96FJ2 (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.4e-12
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 166 VVSVDMPPAMQIHAVVCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGS 225
           + + DM   MQ  AV CA +A   MEK+   K +A  +K+EFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 226 FVTHSVGGFLYFSMDQKLYVLLFKT 250
           +VTH    F+YF + Q + +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of Sed0017919.1 vs. ExPASy Swiss-Prot
Match: Q9D0M5 (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 6.4e-12
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 166 VVSVDMPPAMQIHAVVCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGS 225
           + + DM   MQ  AV CA +A   MEK+   K +A  +K+EFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQA---MEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 226 FVTHSVGGFLYFSMDQKLYVLLFKT 250
           +VTH    F+YF + Q + +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQ-VAILLFKS 88

[Close]

BLAST of Sed0017919.1 vs. ExPASy TrEMBL
Match: A0A6J1KET7 (uncharacterized protein LOC111495174 OS=Cucurbita maxima OX=3661 GN=LOC111495174 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 6.7e-89
Identity = 196/287 (68.29%), Postives = 218/287 (75.96%), Query Frame = 0


Query: 1   MAKPTNSLPILAHPEPDFPPLEPHLKTPPSDSMP-NHSPPPKLEPSMASAAA-SKPFPLS 60
           MAKPTN L ILA P+PD PPL+P  + PPS SM  NHS P KL+ ++A+A++   P PLS
Sbjct: 1   MAKPTNQLRILAPPDPDSPPLKPPFRAPPSASMANNHSTPAKLDSAIAAASSPPNPSPLS 60

Query: 61  KHIPFSRM------------SSNP------PSMLKSKPHLQKVASSGDEKLSEMCRE--- 120
            HIPFS +            +SNP      P+M+KSKPHLQK+AS GDEKLS++C+E   
Sbjct: 61  NHIPFSELHRQPGCLSQKPKNSNPPPSLTVPTMVKSKPHLQKIASGGDEKLSKLCKEMGT 120

Query: 121 ---FDEKKEAN-----DGKALCLVVKEK-KDLKEPHKLHRLESLRPTVSLLPKGGRGQSL 180
              FDEKKEAN     D KAL LVVKEK K+LKEP K H L +LRPTVSLL K GR +SL
Sbjct: 121 KKFFDEKKEANKGVDDDSKALYLVVKEKEKELKEPQKGHGLHTLRPTVSLLRKDGRRRSL 180

Query: 181 VGSLVELGDIFANNGVKVVSVDMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKREFDG 240
               VEL DI A NGVKVVSVDMPPAMQIHAV CARKAHDSMEKFTSKTLALSLKREFD 
Sbjct: 181 ADPQVELADILAKNGVKVVSVDMPPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFDS 240

Query: 241 VYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYVLLFKTSVQKAD 256
           VYGPAWHCIVG SFGSFVTHSVGGFLYFSMDQKLY+LLFKTSVQ+AD
Sbjct: 241 VYGPAWHCIVGKSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD 287

[Close]

BLAST of Sed0017919.1 vs. ExPASy TrEMBL
Match: A0A6J1E7P6 (uncharacterized protein LOC111431561 OS=Cucurbita moschata OX=3662 GN=LOC111431561 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.5e-88
Identity = 196/288 (68.06%), Postives = 217/288 (75.35%), Query Frame = 0


Query: 1   MAKPTNSLPILAHPEPDFPPLEPHLKTPPSDSMP-NHSPPPKLEPSMASAA--ASKPFPL 60
           MAKPTN L ILA P+PD PPL+P  + PPS SM  NHS P KL+ ++A+AA     P PL
Sbjct: 1   MAKPTNQLRILAPPDPDSPPLKPPFRAPPSASMANNHSTPAKLDSAIAAAAPPPPNPSPL 60

Query: 61  SKHIPFSRM------------SSNPP------SMLKSKPHLQKVASSGDEKLSEMCRE-- 120
           S HIPFS++            + NPP      +M+KSKPHLQK+AS GDEKLS++C+E  
Sbjct: 61  SNHIPFSKLHRQSDFSSQKPKNPNPPPPLTVSTMVKSKPHLQKIASGGDEKLSKLCKEMG 120

Query: 121 ----FDEKKEAN-----DGKALCLVVKEK-KDLKEPHKLHRLESLRPTVSLLPKGGRGQS 180
               FDEKKEAN     D KAL LVVKEK K+LKEP K H L +LRPTVSLL K GR +S
Sbjct: 121 TKKFFDEKKEANKGVNDDSKALYLVVKEKEKELKEPQKGHGLHTLRPTVSLLRKDGRRRS 180

Query: 181 LVGSLVELGDIFANNGVKVVSVDMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKREFD 240
           L    VEL DI A NGVKVVSVDMPPAMQIHAV CARKAHDSMEKFTSKTLALSLKREFD
Sbjct: 181 LADPQVELADILAKNGVKVVSVDMPPAMQIHAVDCARKAHDSMEKFTSKTLALSLKREFD 240

Query: 241 GVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYVLLFKTSVQKAD 256
            VYGPAWHCIVG SFGSFVTHSVGGFLYFSMDQKLY+LLFKTSVQ+AD
Sbjct: 241 SVYGPAWHCIVGKSFGSFVTHSVGGFLYFSMDQKLYILLFKTSVQRAD 288

[Close]

BLAST of Sed0017919.1 vs. ExPASy TrEMBL
Match: A0A5D3BH95 (Dynein light chain, type 1/2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003270 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 2.3e-81
Identity = 188/291 (64.60%), Postives = 207/291 (71.13%), Query Frame = 0


Query: 1   MAKPTNSLPILAHPEPDFPPLEPHLKTPPSDSMP-NHSPPPKLEPSMASAAASKPFPLSK 60
           MAKPTN    LA P+ D PPL+P  +   S S+  NHS   KL+ S+  AA   P  LS 
Sbjct: 1   MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSI--AAVPNPSSLST 60

Query: 61  HIPFSRMSS------------NPP------SMLKSKPHLQKVASSGDEKLSEMCRE---- 120
           HIPFS++ S            NPP      SMLKSKPHLQK+ S GDEK S++CRE    
Sbjct: 61  HIPFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELGRK 120

Query: 121 --FDEKKEANDG---KALCLVVKEK--------KDLKEPHKLHRLESLRPTVSLLPKGGR 180
             FD+KKE NDG   K LCLVVKEK        K+LKEP K  ++ SLRPTVSLL K GR
Sbjct: 121 KFFDDKKETNDGFDKKGLCLVVKEKEEKEEKEEKELKEPQKGQKIVSLRPTVSLLRKSGR 180

Query: 181 GQSLVGSLVELGDIFANNGVKVVSVDMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKR 240
            +S   S VEL DIFA NGVKVVSVDM PAMQIHAV CARK HDSMEKFTSKTLALSLKR
Sbjct: 181 RKSFAVSQVELSDIFAKNGVKVVSVDMQPAMQIHAVDCARKTHDSMEKFTSKTLALSLKR 240

Query: 241 EFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYVLLFKTSVQKAD 256
           EFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFS+DQKLY+LLFKTSVQ+AD
Sbjct: 241 EFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSLDQKLYILLFKTSVQRAD 289

[Close]

BLAST of Sed0017919.1 vs. ExPASy TrEMBL
Match: A0A1S3AVF4 (uncharacterized protein LOC103483107 OS=Cucumis melo OX=3656 GN=LOC103483107 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 2.3e-81
Identity = 188/291 (64.60%), Postives = 207/291 (71.13%), Query Frame = 0


Query: 1   MAKPTNSLPILAHPEPDFPPLEPHLKTPPSDSMP-NHSPPPKLEPSMASAAASKPFPLSK 60
           MAKPTN    LA P+ D PPL+P  +   S S+  NHS   KL+ S+  AA   P  LS 
Sbjct: 1   MAKPTNQQRSLAPPDHDSPPLKPIFRATSSASIANNHSTLLKLDSSI--AAVPNPSSLST 60

Query: 61  HIPFSRMSS------------NPP------SMLKSKPHLQKVASSGDEKLSEMCRE---- 120
           HIPFS++ S            NPP      SMLKSKPHLQK+ S GDEK S++CRE    
Sbjct: 61  HIPFSKLHSQAGFSSQRSKNLNPPPAPTVSSMLKSKPHLQKIPSGGDEKFSKVCRELGRK 120

Query: 121 --FDEKKEANDG---KALCLVVKEK--------KDLKEPHKLHRLESLRPTVSLLPKGGR 180
             FD+KKE NDG   K LCLVVKEK        K+LKEP K  ++ SLRPTVSLL K GR
Sbjct: 121 KFFDDKKETNDGFDKKGLCLVVKEKEEKEEKEEKELKEPQKGQKIVSLRPTVSLLRKSGR 180

Query: 181 GQSLVGSLVELGDIFANNGVKVVSVDMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKR 240
            +S   S VEL DIFA NGVKVVSVDM PAMQIHAV CARK HDSMEKFTSKTLALSLKR
Sbjct: 181 RKSFAVSQVELSDIFAKNGVKVVSVDMQPAMQIHAVDCARKTHDSMEKFTSKTLALSLKR 240

Query: 241 EFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYVLLFKTSVQKAD 256
           EFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFS+DQKLY+LLFKTSVQ+AD
Sbjct: 241 EFDGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSLDQKLYILLFKTSVQRAD 289

[Close]

BLAST of Sed0017919.1 vs. ExPASy TrEMBL
Match: A0A0A0LW58 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045690 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.3e-79
Identity = 188/289 (65.05%), Postives = 206/289 (71.28%), Query Frame = 0


Query: 1   MAKPTNSLPILAHPE-PDFPPLEPHLKTPPSDSMP-NHSPPPKLEPSMASAAASKPFPLS 60
           MAKPTN    LA P+  D PPL+P  +   S S+  NHS   KL+ S+  AA   P  LS
Sbjct: 1   MAKPTNQHRSLAPPDHDDSPPLKPIFRATSSASIANNHSMLSKLDSSI--AAVPNPSSLS 60

Query: 61  KHIPFSRMSS------------NPP------SMLKSKPHLQKVASSGDEKLSEMCRE--- 120
            HIPFS + S            NPP      SMLKSKPHLQK+ S GDEKLS++CRE   
Sbjct: 61  THIPFSTLHSQTGFSSQRSKNLNPPPALSVSSMLKSKPHLQKIPSGGDEKLSKVCRELGR 120

Query: 121 ---FDEKKEANDG---KALCLVVKEK-----KDLKEPHKLHRLESLRPTVSLLPKGGRGQ 180
              F EKKE NDG   K LCLVVK+K     K+LKEP K  ++ SLRPTVSLL K GR +
Sbjct: 121 KKFFYEKKETNDGFDKKGLCLVVKQKEEKEEKELKEPQKEQKIVSLRPTVSLLRKSGRRK 180

Query: 181 SLVGSLVELGDIFANNGVKVVSVDMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKREF 240
           S   S VEL DIFA NGVKVVSVDM PAMQIHAV CARK HDSMEKFTSKTLALSLKREF
Sbjct: 181 SFAVSQVELSDIFAKNGVKVVSVDMQPAMQIHAVDCARKTHDSMEKFTSKTLALSLKREF 240

Query: 241 DGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSMDQKLYVLLFKTSVQKAD 256
           DGVYGPAWHCIVGTSFGSFVTHSVGGFLYFS+DQKLY+LLFKTSVQ+AD
Sbjct: 241 DGVYGPAWHCIVGTSFGSFVTHSVGGFLYFSLDQKLYILLFKTSVQRAD 287

[Close]

BLAST of Sed0017919.1 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 125.2 bits (313), Expect = 7.7e-29
Identity = 61/91 (67.03%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 164 VKVVSVDMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFG 223
           V++++ DMP  MQ HA  CAR   DS+EKF+SK +A +LK+EFD  YGPAWHCIVG+SFG
Sbjct: 117 VRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFG 176

Query: 224 SFVTHSVGGFLYFSMDQKLYVLLFKTSVQKA 255
           SFVTHS G F+YFSMD KLYVLLFKT V+ A
Sbjct: 177 SFVTHSTGCFIYFSMD-KLYVLLFKTKVRPA 206

[Close]

BLAST of Sed0017919.1 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 99.8 bits (247), Expect = 3.5e-21
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 164 VKVVSVDMPPAMQIHAVVCARKAHDSME-KFTSKTLALSLKREFDGVYGPAWHCIVGTSF 223
           V+V + DMP   Q  A   +R+  ++   K  +K LA +LK++FD  YGPAWHCIVGTSF
Sbjct: 36  VRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSF 95

Query: 224 GSFVTHSVGGFLYFSMDQKLYVLLFKTSVQKAD 256
           GS+VTHS GGFLYF +D K+YVLLFKT+V+  D
Sbjct: 96  GSYVTHSTGGFLYFQID-KVYVLLFKTAVEPLD 127

[Close]

BLAST of Sed0017919.1 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-13
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 165 KVVSVDMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGS 224
           KV   DMP  MQ+ A+  A ++ D  + F S ++A  +K+EFD  YG  W C+VGT+FG 
Sbjct: 7   KVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFGC 66

Query: 225 FVTHSVGGFLYFSMDQKLYVLLFK 249
           F THS G F+YF +   L  L+FK
Sbjct: 67  FFTHSKGTFIYFHLG-TLNFLIFK 89

[Close]

BLAST of Sed0017919.1 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-13
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 170 DMPPAMQIHAVVCARKAHDSMEKFTSKTLALSLKREFDGVYGPAWHCIVGTSFGSFVTHS 229
           DMP  MQ+ A+  A +A D  + F  K++A  +K+EFD  YG  W C+VG++FG F THS
Sbjct: 12  DMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNFGCFFTHS 71

Query: 230 VGGFLYFSMDQKLYVLLFK 249
            G F+YF + + L  L+FK
Sbjct: 72  KGTFIYFQL-ETLKFLIFK 89

[Close]

BLAST of Sed0017919.1 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-12
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 166 VVSVDMPPAMQIHAVVCARKAHDSMEKFT-SKTLALSLKREFDGVYGPAWHCIVGTSFGS 225
           + S DM   MQ  A+  A  A    EK++  K +A ++K+EFD  +G  WHCIVG +FGS
Sbjct: 42  IKSADMKDDMQKEAIEIAISA---FEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFGS 101

Query: 226 FVTHSVGGFLYFSMDQKLYVLLFKT 250
           +VTH    F+YF +DQK  VLLFK+
Sbjct: 102 YVTHETNHFVYFYLDQKA-VLLFKS 122

The following BLAST results are available for this feature:

BLAST of Sed0017919.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019845.1	1.1e-88	68.17	hypothetical protein SDJN02_18810, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023000852.1	1.4e-88	68.29	uncharacterized protein LOC111495174 [Cucurbita maxima]	[more]
XP_022924012.1	3.1e-88	68.06	uncharacterized protein LOC111431561 [Cucurbita moschata]	[more]
XP_023520376.1	1.2e-87	67.94	uncharacterized protein LOC111783690 [Cucurbita pepo subsp. pepo]	[more]
KAG6584250.1	4.4e-87	67.71	hypothetical protein SDJN03_20182, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0017919.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q86A88	3.4e-13	48.24	Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=...	[more]
O02414	5.8e-13	49.41	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q3MHR3	6.4e-12	47.06	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]
Q96FJ2	6.4e-12	47.06	Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1	[more]
Q9D0M5	6.4e-12	47.06	Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1	[more]

BLAST of Sed0017919.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KET7	6.7e-89	68.29	uncharacterized protein LOC111495174 OS=Cucurbita maxima OX=3661 GN=LOC111495174...	[more]
A0A6J1E7P6	1.5e-88	68.06	uncharacterized protein LOC111431561 OS=Cucurbita moschata OX=3662 GN=LOC1114315...	[more]
A0A5D3BH95	2.3e-81	64.60	Dynein light chain, type 1/2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3AVF4	2.3e-81	64.60	uncharacterized protein LOC103483107 OS=Cucumis melo OX=3656 GN=LOC103483107 PE=...	[more]
A0A0A0LW58	1.3e-79	65.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045690 PE=4 SV=1	[more]

BLAST of Sed0017919.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20110.1	7.7e-29	67.03	Dynein light chain type 1 family protein	[more]
AT1G23220.1	3.5e-21	55.91	Dynein light chain type 1 family protein	[more]
AT3G16120.1	1.2e-13	45.24	Dynein light chain type 1 family protein	[more]
AT1G52240.2	2.0e-13	45.57	RHO guanyl-nucleotide exchange factor 11	[more]
AT4G15930.1	1.3e-12	47.06	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 159..249 e-value: 5.8E-35 score: 132.1
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 164..249 e-value: 6.1E-27 score: 93.8
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 63..255
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 159..250 e-value: 1.8E-29 score: 103.6
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 162..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..41
None	No IPR available	PANTHER	PTHR11886:SF80	INTRASTRAND CROSS-LINK RECOGNITION PROTEIN-LIKE	coord: 63..255

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0017919	Sed0017919	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0017919.1-exon	Sed0017919.1-exon-LG01:13607660..13608271	exon
Sed0017919.1-exon	Sed0017919.1-exon-LG01:13608367..13608522	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0017919.1-cds	Sed0017919.1-cds-LG01:13607660..13608271	CDS
Sed0017919.1-cds	Sed0017919.1-cds-LG01:13608367..13608522	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0017919.1	Sed0017919.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding