Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCTGCGACCACGTCCACTAATTTTCAGGGCTATCCGGTGAATTTCATTTTGAGACCCACTGACCCGGCTCGAGATCTCGCCCTCTCTCTCCATAACCTCCATGATTCTCCCCTAATTCCGTCGGAGGAAGATGGAAACCATTCGCCGGCGAATGACCAGCGGCTTATTTCCGATTCGATTCCGGCGGGGTACGAAGGAGACGAGGCTGGGCTGTGGCTGCAGCAGCCATTGTTAGGGCAAAATTCGGCAGCGGCGTTTTCCCAGAGGGTGTCGGTTCAGGCCAGTTTGGGGCATTCGCTGCCGATTCGTGGTTGGAGCAATCAGAATCGACAGTTGTCGGTGCTCGGCGGCCGATTTGATGGGTCATCGGAGTTGCGTACGCCGTCGCGGATTCGAGGTGAAGGTCGGGAAGATGGCGTCGTTTCCGGGACTCATTCGTCGCCGCCGAATTATCGCCGGTAG
mRNA sequence
ATGAGTTCTGCGACCACGTCCACTAATTTTCAGGGCTATCCGGTGAATTTCATTTTGAGACCCACTGACCCGGCTCGAGATCTCGCCCTCTCTCTCCATAACCTCCATGATTCTCCCCTAATTCCGTCGGAGGAAGATGGAAACCATTCGCCGGCGAATGACCAGCGGCTTATTTCCGATTCGATTCCGGCGGGGTACGAAGGAGACGAGGCTGGGCTGTGGCTGCAGCAGCCATTGTTAGGGCAAAATTCGGCAGCGGCGTTTTCCCAGAGGGTGTCGGTTCAGGCCAGTTTGGGGCATTCGCTGCCGATTCGTGGTTGGAGCAATCAGAATCGACAGTTGTCGGTGCTCGGCGGCCGATTTGATGGGTCATCGGAGTTGCGTACGCCGTCGCGGATTCGAGGTGAAGGTCGGGAAGATGGCGTCGTTTCCGGGACTCATTCGTCGCCGCCGAATTATCGCCGGTAG
Coding sequence (CDS)
ATGAGTTCTGCGACCACGTCCACTAATTTTCAGGGCTATCCGGTGAATTTCATTTTGAGACCCACTGACCCGGCTCGAGATCTCGCCCTCTCTCTCCATAACCTCCATGATTCTCCCCTAATTCCGTCGGAGGAAGATGGAAACCATTCGCCGGCGAATGACCAGCGGCTTATTTCCGATTCGATTCCGGCGGGGTACGAAGGAGACGAGGCTGGGCTGTGGCTGCAGCAGCCATTGTTAGGGCAAAATTCGGCAGCGGCGTTTTCCCAGAGGGTGTCGGTTCAGGCCAGTTTGGGGCATTCGCTGCCGATTCGTGGTTGGAGCAATCAGAATCGACAGTTGTCGGTGCTCGGCGGCCGATTTGATGGGTCATCGGAGTTGCGTACGCCGTCGCGGATTCGAGGTGAAGGTCGGGAAGATGGCGTCGTTTCCGGGACTCATTCGTCGCCGCCGAATTATCGCCGGTAG
Protein sequence
MSSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDSIPAGYEGDEAGLWLQQPLLGQNSAAAFSQRVSVQASLGHSLPIRGWSNQNRQLSVLGGRFDGSSELRTPSRIRGEGREDGVVSGTHSSPPNYRR
Homology
BLAST of CmUC09G170900 vs. NCBI nr
Match:
XP_023529225.1 (transcription factor TCP10-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 208.4 bits (529), Expect = 4.5e-50
Identity = 107/154 (69.48%), Postives = 118/154 (76.62%), Query Frame = 0
Query: 2 SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDS 61
+SATTS NFQGYPV+ IL PT P RDLALSLHN HDS LIPSE++ N SP N QRLI DS
Sbjct: 129 TSATTSINFQGYPVDLILTPTGPPRDLALSLHNFHDSRLIPSEQNANSSPGNYQRLIGDS 188
Query: 62 IPAGYEGDEAGLWLQQPLLGQNSAAAFSQRVSVQASLGHSLPIRGWSNQNRQLSVLGGRF 121
IPAGYEG +AGLWLQQPL+GQNS AAFSQ +P+ GWSNQ RQ + GGRF
Sbjct: 189 IPAGYEGGDAGLWLQQPLMGQNSTAAFSQ-----------VPMHGWSNQIRQSAGHGGRF 248
Query: 122 DGSSELRTPSRIRGEGREDGVVSGTHSSPPNYRR 156
+G SE TPSRIRGEG EDGVVSG+HSS PNY R
Sbjct: 249 EGPSEFCTPSRIRGEGVEDGVVSGSHSSSPNYHR 271
BLAST of CmUC09G170900 vs. NCBI nr
Match:
XP_022989259.1 (transcription factor TCP10-like [Cucurbita maxima])
HSP 1 Score: 208.0 bits (528), Expect = 5.9e-50
Identity = 107/154 (69.48%), Postives = 118/154 (76.62%), Query Frame = 0
Query: 2 SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDS 61
+SATTS NFQGYPV+ IL PTDP RDLALSLHN HDS LIPSE++ N SP N QRLI DS
Sbjct: 129 TSATTSINFQGYPVDLILTPTDPPRDLALSLHNFHDSRLIPSEQNANSSPGNYQRLIGDS 188
Query: 62 IPAGYEGDEAGLWLQQPLLGQNSAAAFSQRVSVQASLGHSLPIRGWSNQNRQLSVLGGRF 121
IPAGYEG +AGLWLQQPL+ QNS AAFSQ +P+ GWSNQ RQ + GGRF
Sbjct: 189 IPAGYEGGDAGLWLQQPLMEQNSTAAFSQ-----------VPMHGWSNQIRQSAGHGGRF 248
Query: 122 DGSSELRTPSRIRGEGREDGVVSGTHSSPPNYRR 156
+G SE TPSRIRGEG EDGVVSG+HSS PNY R
Sbjct: 249 EGPSEFCTPSRIRGEGVEDGVVSGSHSSSPNYHR 271
BLAST of CmUC09G170900 vs. NCBI nr
Match:
KAG6589264.1 (Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022963.1 Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 206.1 bits (523), Expect = 2.2e-49
Identity = 106/154 (68.83%), Postives = 117/154 (75.97%), Query Frame = 0
Query: 2 SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDS 61
+SATTS NFQGYPV+ IL PTDP RDLALSLHN HDS LIPSE++ N SP N QRLI DS
Sbjct: 129 TSATTSINFQGYPVDLILTPTDPPRDLALSLHNFHDSRLIPSEQNANSSPGNYQRLIGDS 188
Query: 62 IPAGYEGDEAGLWLQQPLLGQNSAAAFSQRVSVQASLGHSLPIRGWSNQNRQLSVLGGRF 121
IPAGYEG +AGLWLQQPL+GQNS AAFSQ +P+ GWS+Q RQ + GGR
Sbjct: 189 IPAGYEGGDAGLWLQQPLMGQNSTAAFSQ-----------VPMHGWSDQIRQSAGHGGRL 248
Query: 122 DGSSELRTPSRIRGEGREDGVVSGTHSSPPNYRR 156
G SE TPSRIRGEG EDGVVSG+HSS PNY R
Sbjct: 249 QGPSEFCTPSRIRGEGVEDGVVSGSHSSSPNYHR 271
BLAST of CmUC09G170900 vs. NCBI nr
Match:
XP_022930891.1 (transcription factor TCP10-like [Cucurbita moschata])
HSP 1 Score: 199.1 bits (505), Expect = 2.7e-47
Identity = 103/154 (66.88%), Postives = 115/154 (74.68%), Query Frame = 0
Query: 2 SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDS 61
+SATTS NFQGYPV+ IL PTDP RDLALSLHN H+S LIPSE++ N SP N QRLI DS
Sbjct: 129 TSATTSINFQGYPVDLILTPTDPPRDLALSLHNFHESRLIPSEQNANSSPGNYQRLIGDS 188
Query: 62 IPAGYEGDEAGLWLQQPLLGQNSAAAFSQRVSVQASLGHSLPIRGWSNQNRQLSVLGGRF 121
IPAGYEG +AGLWLQQPL+GQNS AAFSQ + + GWS+Q RQ + GGR
Sbjct: 189 IPAGYEGGDAGLWLQQPLMGQNSTAAFSQ-----------VQMHGWSDQIRQSAGHGGRL 248
Query: 122 DGSSELRTPSRIRGEGREDGVVSGTHSSPPNYRR 156
G SE TPSRIRGEG EDGVV G+HSS PNY R
Sbjct: 249 QGPSEFCTPSRIRGEGVEDGVVLGSHSSSPNYHR 271
BLAST of CmUC09G170900 vs. NCBI nr
Match:
XP_038877605.1 (transcription factor TCP10-like [Benincasa hispida])
HSP 1 Score: 112.8 bits (281), Expect = 2.6e-21
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 0
Query: 1 MSSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISD 60
MSSAT STNFQGYPVN I RPTDP RDLALSLHN HDS +IPSEEDG+HS ANDQRLI+D
Sbjct: 132 MSSATVSTNFQGYPVNLISRPTDPVRDLALSLHNFHDSRVIPSEEDGSHSTANDQRLIAD 191
Query: 61 SIPA 65
SIPA
Sbjct: 192 SIPA 195
BLAST of CmUC09G170900 vs. ExPASy TrEMBL
Match:
A0A6J1JNV1 (transcription factor TCP10-like OS=Cucurbita maxima OX=3661 GN=LOC111486387 PE=4 SV=1)
HSP 1 Score: 208.0 bits (528), Expect = 2.8e-50
Identity = 107/154 (69.48%), Postives = 118/154 (76.62%), Query Frame = 0
Query: 2 SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDS 61
+SATTS NFQGYPV+ IL PTDP RDLALSLHN HDS LIPSE++ N SP N QRLI DS
Sbjct: 129 TSATTSINFQGYPVDLILTPTDPPRDLALSLHNFHDSRLIPSEQNANSSPGNYQRLIGDS 188
Query: 62 IPAGYEGDEAGLWLQQPLLGQNSAAAFSQRVSVQASLGHSLPIRGWSNQNRQLSVLGGRF 121
IPAGYEG +AGLWLQQPL+ QNS AAFSQ +P+ GWSNQ RQ + GGRF
Sbjct: 189 IPAGYEGGDAGLWLQQPLMEQNSTAAFSQ-----------VPMHGWSNQIRQSAGHGGRF 248
Query: 122 DGSSELRTPSRIRGEGREDGVVSGTHSSPPNYRR 156
+G SE TPSRIRGEG EDGVVSG+HSS PNY R
Sbjct: 249 EGPSEFCTPSRIRGEGVEDGVVSGSHSSSPNYHR 271
BLAST of CmUC09G170900 vs. ExPASy TrEMBL
Match:
A0A6J1ES58 (transcription factor TCP10-like OS=Cucurbita moschata OX=3662 GN=LOC111437241 PE=4 SV=1)
HSP 1 Score: 199.1 bits (505), Expect = 1.3e-47
Identity = 103/154 (66.88%), Postives = 115/154 (74.68%), Query Frame = 0
Query: 2 SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDS 61
+SATTS NFQGYPV+ IL PTDP RDLALSLHN H+S LIPSE++ N SP N QRLI DS
Sbjct: 129 TSATTSINFQGYPVDLILTPTDPPRDLALSLHNFHESRLIPSEQNANSSPGNYQRLIGDS 188
Query: 62 IPAGYEGDEAGLWLQQPLLGQNSAAAFSQRVSVQASLGHSLPIRGWSNQNRQLSVLGGRF 121
IPAGYEG +AGLWLQQPL+GQNS AAFSQ + + GWS+Q RQ + GGR
Sbjct: 189 IPAGYEGGDAGLWLQQPLMGQNSTAAFSQ-----------VQMHGWSDQIRQSAGHGGRL 248
Query: 122 DGSSELRTPSRIRGEGREDGVVSGTHSSPPNYRR 156
G SE TPSRIRGEG EDGVV G+HSS PNY R
Sbjct: 249 QGPSEFCTPSRIRGEGVEDGVVLGSHSSSPNYHR 271
BLAST of CmUC09G170900 vs. ExPASy TrEMBL
Match:
A0A6J1D1N8 (transcription factor TCP10-like OS=Momordica charantia OX=3673 GN=LOC111016780 PE=4 SV=1)
HSP 1 Score: 104.8 bits (260), Expect = 3.4e-19
Identity = 65/111 (58.56%), Postives = 71/111 (63.96%), Query Frame = 0
Query: 2 SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDS 61
+SATTS NFQGYPV+ IL PTDP +L LSLHN HDS SPA DS
Sbjct: 96 TSATTSINFQGYPVDLILSPTDPPENLRLSLHNFHDS-----------SPA-------DS 155
Query: 62 IPAGYEGDEAGLWLQQPLLGQNS--AAAFSQRVSVQASLGHSLPIRGWSNQ 111
IP G++AGLWLQQPLLGQNS AAAFSQR HS+PIRGWS Q
Sbjct: 156 IP----GEDAGLWLQQPLLGQNSEAAAAFSQRGP------HSVPIRGWSYQ 178
BLAST of CmUC09G170900 vs. ExPASy TrEMBL
Match:
A0A6A6K413 (TCP domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_011489 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 67/191 (35.08%), Postives = 87/191 (45.55%), Query Frame = 0
Query: 2 SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLI--PSEEDGNHSPANDQRLIS 61
SS T+S NFQGYP + I R T+ DL LSLH D LI S+ D +H+P+NDQ L +
Sbjct: 158 SSTTSSMNFQGYPPDIISRTTNHTEDLGLSLHCFQDQGLIRGQSQADTSHAPSNDQNLFA 217
Query: 62 DSIPAGYEGD-----------------EAGLWLQQP-------LLGQNSAAAFSQRVSVQ 121
S P GYE + + G P LLGQ+ AFSQR +Q
Sbjct: 218 GSAPVGYEANFQRMVAWSNNTSTENRTDGGFAFNSPQMPPPQTLLGQDQ--AFSQRGPLQ 277
Query: 122 ASLGHSLPIRGWSN------------QNRQLSVLGGRF--DGSSELRTPSRIRGEGREDG 153
+S S IR W++ + Q + G RF +G P+RI GE +
Sbjct: 278 SSFAQS--IRAWNDLTMASADHHRTQEIHQSFIFGSRFASEGLPGFSIPTRIHGEEEQSI 337
BLAST of CmUC09G170900 vs. ExPASy TrEMBL
Match:
A0A1Q3C6T3 (TCP domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_19463 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 71/195 (36.41%), Postives = 86/195 (44.10%), Query Frame = 0
Query: 2 SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLI--PSEEDGNHSPANDQRLIS 61
SS +S NFQ YP + I R T P +DL LSLH D LI ++ D +H+ + DQ L
Sbjct: 167 SSTASSINFQNYPPDMISRSTIPTQDLGLSLHPFQDPGLIHGQAQGDSSHTNSTDQNLFV 226
Query: 62 DSIPAGYE--------------------GDEAGLWL--------QQPLLGQNSAAAFSQR 121
S P GYE G G ++ QQ LLGQ S AFSQR
Sbjct: 227 GSAPVGYEANFQRMVAWSNGTSTENRGGGGSVGGFIFNSLALPHQQALLGQGS--AFSQR 286
Query: 122 VSVQASLGHSLPIRGW------------SNQNRQLSVLGGRF--DGSSELRTPSRIRGEG 153
+Q+S S IR W + Q S+LGGRF DG P+RI GE
Sbjct: 287 GPLQSSFAQS--IRSWDDISIASAGHQKTQDMHQPSILGGRFVSDGLPGFCIPARIHGEE 346
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_023529225.1 | 4.5e-50 | 69.48 | transcription factor TCP10-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022989259.1 | 5.9e-50 | 69.48 | transcription factor TCP10-like [Cucurbita maxima] | [more] |
KAG6589264.1 | 2.2e-49 | 68.83 | Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia] >KAG... | [more] |
XP_022930891.1 | 2.7e-47 | 66.88 | transcription factor TCP10-like [Cucurbita moschata] | [more] |
XP_038877605.1 | 2.6e-21 | 84.38 | transcription factor TCP10-like [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1JNV1 | 2.8e-50 | 69.48 | transcription factor TCP10-like OS=Cucurbita maxima OX=3661 GN=LOC111486387 PE=4... | [more] |
A0A6J1ES58 | 1.3e-47 | 66.88 | transcription factor TCP10-like OS=Cucurbita moschata OX=3662 GN=LOC111437241 PE... | [more] |
A0A6J1D1N8 | 3.4e-19 | 58.56 | transcription factor TCP10-like OS=Momordica charantia OX=3673 GN=LOC111016780 P... | [more] |
A0A6A6K413 | 1.4e-12 | 35.08 | TCP domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_011489 PE=4... | [more] |
A0A1Q3C6T3 | 1.4e-12 | 36.41 | TCP domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_1946... | [more] |
Match Name | E-value | Identity | Description | |