CmUC06G118420 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G118420
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CmU531Chr06: 20583158 .. 20583540 (-)
RNA-Seq Expression	CmUC06G118420
Synteny	CmUC06G118420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGCGCAACACAACCGAGGAAGAGGACATGGTTGTGGTCATGGAAATAACAATGAAGAGAAAGAACAAACGAGCCACAAAATTGGCGTGGACGAGGTTGAGGTCGTGGAAGAGGTGATCGCTCAAATCGTCTAAATATCAAGTGTTACAATTGTGGAAAATATGGACACTACACAAAATATTGCTATGCCGAGAAGAAGGTGGAAGAAAATGCGAACTTAGTTGCGGAAGATGAGACCAAAGATGAGGGTGTTCTTGTGATGGCCCGTGAAGGTATCACTCCGGAGAGCAACATGCTGTTGTATCTTGACACCGGTGCAAGCAACCATATGTGTAGACACAAACATCTTTTTGTTGATATGCAAGAGATAGAAGATTGA

mRNA sequence

ATGTATGCGCAACACAACCGAGGAAGAGGACATGGTTGTGGTCATGGAAATAACAATGAAGAGAAAGAACAAACGAGCCACAAAATTGGCGTGGACGAGGTTGAGGTCGTGGAAGAGGTGGAAGAAAATGCGAACTTAGTTGCGGAAGATGAGACCAAAGATGAGGGTGTTCTTGTGATGGCCCGTGAAGGTATCACTCCGGAGAGCAACATGCTGTTGTATCTTGACACCGGTGCAAGCAACCATATGTGTAGACACAAACATCTTTTTGTTGATATGCAAGAGATAGAAGATTGA

Coding sequence (CDS)

ATGTATGCGCAACACAACCGAGGAAGAGGACATGGTTGTGGTCATGGAAATAACAATGAAGAGAAAGAACAAACGAGCCACAAAATTGGCGTGGACGAGGTTGAGGTCGTGGAAGAGGTGGAAGAAAATGCGAACTTAGTTGCGGAAGATGAGACCAAAGATGAGGGTGTTCTTGTGATGGCCCGTGAAGGTATCACTCCGGAGAGCAACATGCTGTTGTATCTTGACACCGGTGCAAGCAACCATATGTGTAGACACAAACATCTTTTTGTTGATATGCAAGAGATAGAAGATTGA

Protein sequence

MYAQHNRGRGHGCGHGNNNEEKEQTSHKIGVDEVEVVEEVEENANLVAEDETKDEGVLVMAREGITPESNMLLYLDTGASNHMCRHKHLFVDMQEIED

Homology

[Close]

BLAST of CmUC06G118420 vs. NCBI nr
Match: KYP41491.1 (hypothetical protein KK1_037138 [Cajanus cajan])

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 61/110 (55.45%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 1   MYAQHNRGRGHGCGHGNNNEEKEQTSHKIGVD------------EVEVVEEVEENANLVA 60
           MYAQHNRGRG G G G     +   S++  V+                 ++VEEN NLV 
Sbjct: 1   MYAQHNRGRGRGRG-GRRGRGRGGRSNRTNVECYNCSKYGHYAKNCYAKKKVEENVNLVK 60

Query: 61  EDETKDEGVLVMAREGITPESNMLLYLDTGASNHMCRHKHLFVDMQEIED 99
           EDETK+EG+L+MA EGIT +S+M+ YLDTGASNHMC HKHLFVD+QEIED
Sbjct: 61  EDETKNEGILMMANEGITLDSDMVWYLDTGASNHMCGHKHLFVDIQEIED 109

[Close]

BLAST of CmUC06G118420 vs. NCBI nr
Match: KAE8706666.1 (hypothetical protein F3Y22_tig00110388pilonHSYRG00007 [Hibiscus syriacus])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 42/61 (68.85%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 38  EEVEENANLVAEDETKDEGVLVMAREGITPESNMLLYLDTGASNHMCRHKHLFVDMQEIE 97
           + VEEN NLVAE+ET+++GVL+MA + I P+S+ + YLDTGASNHMC HKHLFVDMQEIE
Sbjct: 285 KRVEENVNLVAEEETREDGVLMMAYKNIIPDSDTVWYLDTGASNHMCGHKHLFVDMQEIE 344

Query: 98  D 99
           +
Sbjct: 345 E 345

[Close]

BLAST of CmUC06G118420 vs. NCBI nr
Match: KAA0045462.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK00248.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 3.6e-13
Identity = 46/100 (46.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 4   QHNRGRGHGCGHGNNNEEKEQTSHKIG-----VDEVEVVEEVEENANLVAEDETKDEGVL 63
           Q+ RGRG G G G+ +       +  G      ++    ++VEENANL+A++ETK++ +L
Sbjct: 108 QNWRGRGRGRGRGSRSNRPNVKCYNCGKYGHYANDWYAEKKVEENANLIAKEETKNDDIL 167

Query: 64  VMAREGITPESNMLLYLDTGASNHMCRHKHLFVDMQEIED 99
           +M  EG  P+S+M+ YL+TG SN+MC H+H FVDMQEIED
Sbjct: 168 MMTHEGTIPDSDMVCYLNTGGSNNMCGHEHFFVDMQEIED 207

[Close]

BLAST of CmUC06G118420 vs. NCBI nr
Match: KAE8732520.1 (Detected protein of unknown function [Hibiscus syriacus])

HSP 1 Score: 84.3 bits (207), Expect = 6.2e-13
Identity = 57/130 (43.85%), Postives = 75/130 (57.69%), Query Frame = 0


Query: 1   MYAQHNRGRGHGCGHGNNN------------EEKEQTSHKIG-VDEVEVVE--------- 60
           +Y Q+ RGRG G    NN             EEK   ++KIG V++V V E         
Sbjct: 175 LYTQNFRGRGRGRRGRNNGRGGGGRCRSGYYEEKGSQANKIGEVEDVVVGEATDQIIQML 234

Query: 61  ----------EVEENANLVAEDETKDEGVLVMAREGITPESNMLLYLDTGASNHMCRHKH 99
                     +VEENANLVAE+ET+++GVL+M  +   P+ + + YLDT ASNHMC HKH
Sbjct: 235 SATTECYSEKKVEENANLVAEEETREDGVLMMTYKSTVPDRDTVWYLDTRASNHMCGHKH 294

[Close]

BLAST of CmUC06G118420 vs. NCBI nr
Match: KAB5529592.1 (hypothetical protein DKX38_019673 [Salix brachista])

HSP 1 Score: 81.6 bits (200), Expect = 4.0e-12
Identity = 36/61 (59.02%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 38  EEVEENANLVAEDETKDEGVLVMAREGITPESNMLLYLDTGASNHMCRHKHLFVDMQEIE 97
           ++VEEN NLV E+ET+++GVL+MA +    ++N++ YLDTGASNHMC HKHLF +M+E+E
Sbjct: 148 KKVEENVNLVTEEETREDGVLMMAYKNTVSDNNIVWYLDTGASNHMCGHKHLFKEMREVE 207

Query: 98  D 99
           D
Sbjct: 208 D 208

[Close]

BLAST of CmUC06G118420 vs. ExPASy TrEMBL
Match: A0A151RFW6 (CCHC-type domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_037138 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.6e-20
Identity = 61/110 (55.45%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 1   MYAQHNRGRGHGCGHGNNNEEKEQTSHKIGVD------------EVEVVEEVEENANLVA 60
           MYAQHNRGRG G G G     +   S++  V+                 ++VEEN NLV 
Sbjct: 1   MYAQHNRGRGRGRG-GRRGRGRGGRSNRTNVECYNCSKYGHYAKNCYAKKKVEENVNLVK 60

Query: 61  EDETKDEGVLVMAREGITPESNMLLYLDTGASNHMCRHKHLFVDMQEIED 99
           EDETK+EG+L+MA EGIT +S+M+ YLDTGASNHMC HKHLFVD+QEIED
Sbjct: 61  EDETKNEGILMMANEGITLDSDMVWYLDTGASNHMCGHKHLFVDIQEIED 109

[Close]

BLAST of CmUC06G118420 vs. ExPASy TrEMBL
Match: A0A6A3AQY9 (CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110388pilonHSYRG00007 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.5e-15
Identity = 42/61 (68.85%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 38  EEVEENANLVAEDETKDEGVLVMAREGITPESNMLLYLDTGASNHMCRHKHLFVDMQEIE 97
           + VEEN NLVAE+ET+++GVL+MA + I P+S+ + YLDTGASNHMC HKHLFVDMQEIE
Sbjct: 285 KRVEENVNLVAEEETREDGVLMMAYKNIIPDSDTVWYLDTGASNHMCGHKHLFVDMQEIE 344

Query: 98  D 99
           +
Sbjct: 345 E 345

[Close]

BLAST of CmUC06G118420 vs. ExPASy TrEMBL
Match: A0A5A7TQ20 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2460G00080 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.8e-13
Identity = 46/100 (46.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 4   QHNRGRGHGCGHGNNNEEKEQTSHKIG-----VDEVEVVEEVEENANLVAEDETKDEGVL 63
           Q+ RGRG G G G+ +       +  G      ++    ++VEENANL+A++ETK++ +L
Sbjct: 108 QNWRGRGRGRGRGSRSNRPNVKCYNCGKYGHYANDWYAEKKVEENANLIAKEETKNDDIL 167

Query: 64  VMAREGITPESNMLLYLDTGASNHMCRHKHLFVDMQEIED 99
           +M  EG  P+S+M+ YL+TG SN+MC H+H FVDMQEIED
Sbjct: 168 MMTHEGTIPDSDMVCYLNTGGSNNMCGHEHFFVDMQEIED 207

[Close]

BLAST of CmUC06G118420 vs. ExPASy TrEMBL
Match: A0A6A3CTC0 (Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00001860pilonHSYRG00008 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.0e-13
Identity = 57/130 (43.85%), Postives = 75/130 (57.69%), Query Frame = 0


Query: 1   MYAQHNRGRGHGCGHGNNN------------EEKEQTSHKIG-VDEVEVVE--------- 60
           +Y Q+ RGRG G    NN             EEK   ++KIG V++V V E         
Sbjct: 175 LYTQNFRGRGRGRRGRNNGRGGGGRCRSGYYEEKGSQANKIGEVEDVVVGEATDQIIQML 234

Query: 61  ----------EVEENANLVAEDETKDEGVLVMAREGITPESNMLLYLDTGASNHMCRHKH 99
                     +VEENANLVAE+ET+++GVL+M  +   P+ + + YLDT ASNHMC HKH
Sbjct: 235 SATTECYSEKKVEENANLVAEEETREDGVLMMTYKSTVPDRDTVWYLDTRASNHMCGHKH 294

[Close]

BLAST of CmUC06G118420 vs. ExPASy TrEMBL
Match: A0A5N5KGV2 (DUF4219 domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_019673 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 36/61 (59.02%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 38  EEVEENANLVAEDETKDEGVLVMAREGITPESNMLLYLDTGASNHMCRHKHLFVDMQEIE 97
           ++VEEN NLV E+ET+++GVL+MA +    ++N++ YLDTGASNHMC HKHLF +M+E+E
Sbjct: 148 KKVEENVNLVTEEETREDGVLMMAYKNTVSDNNIVWYLDTGASNHMCGHKHLFKEMREVE 207

Query: 98  D 99
           D
Sbjct: 208 D 208

The following BLAST results are available for this feature:

BLAST of CmUC06G118420 vs. NCBI nr


Match Name	E-value	Identity	Description
KYP41491.1	2.0e-19	55.45	hypothetical protein KK1_037138 [Cajanus cajan]	[more]
KAE8706666.1	1.1e-14	68.85	hypothetical protein F3Y22_tig00110388pilonHSYRG00007 [Hibiscus syriacus]	[more]
KAA0045462.1	3.6e-13	46.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAE8732520.1	6.2e-13	43.85	Detected protein of unknown function [Hibiscus syriacus]	[more]
KAB5529592.1	4.0e-12	59.02	hypothetical protein DKX38_019673 [Salix brachista]	[more]

BLAST of CmUC06G118420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC06G118420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A151RFW6	9.6e-20	55.45	CCHC-type domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_037138 PE=4 ...	[more]
A0A6A3AQY9	5.5e-15	68.85	CCHC-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig0...	[more]
A0A5A7TQ20	1.8e-13	46.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A6A3CTC0	3.0e-13	43.85	Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=...	[more]
A0A5N5KGV2	1.9e-12	59.02	DUF4219 domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_019673 ...	[more]

BLAST of CmUC06G118420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G118420.1	CmUC06G118420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding