Sed0015068 (gene) Chayote v1

Overview


Name	Sed0015068
Type	gene
Organism	Sechium edule (Chayote v1)
Description	F-box protein SKIP28
Location	LG11: 32053084 .. 32056133 (+)
RNA-Seq Expression	Sed0015068
Synteny	Sed0015068

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTAAGTGAAGGTAGCTTACTCATCCACACAAAAATGATCTCCCAATTTCATAACCACAAAGCCAGCAGAGAAGGAAGCCGAAGAATTCACCGCCATGTCTGAGAATCAAGAACCACCAAATCCGGCCACCGCCGCCGCCGGAAGTTCATCGATCGAACCAGCGCCGCCGCACGAGGCGTTGTTCCTTGTACTGAGTCATCTTCCTCTTTTCGAGCTTCTTTCCATGAGCGCAGTCTGCGTTTCGCTCAGAGATGCAGTGGAACACGACGTGTTGCTGTGGCTTCACATCGTCGTCGATCGGCCGTTGAACAGCCGCCTGTCCGATCGAATCCTCCGCCGAATCTCCAGAAAGGCCGACGGTCGCCTTAGAACTATGGCTTTGATCAACTGTTTCAGGATTTCTGATTCTGGACTTTGCGATGTTGTTGAGAAGAATCCTCTTCTCACTAAGGTATTATTCGCATCTTTGTATAATTTCTTGTGTTGATTGGTTAATCTTCTTAGTTCTCAATAGGTTACACATTTTTGGTTATAGTGTTTACCAGCAACTTTCTGAATTATCTGTAGACATTTGTCGATTTGTGTTTCGAATTTTGTTGTAGATTTAAGTTCATCTTGATGGAATTACTGTTTAAAGAGGAGAAAGCAGCTTATTGTTTGTCAATGTATCAATGGCTGCCCTTTACTTCACAAAAAAGATGGTGAAAATGAGCTTTTGTTATGTTAGAAAAATTAATAAGGTATATCAATAGTTAGTTTAGAAATCATGAAAGAAATAGGTAAAATAGTGATCTGTGTCACTCACCACTAGGCCATTGCCGATGACTCCTCCATGCTGTCGCTGTGTTGCATACTTCTTGTTGGCGACATCTCCTTCATGGGCCTCAACTCGGCTCTAAGTCGTTGTACTGTTCTCGATCCTTTCTTCCTCGACACTGTTTTGTGCGACCTCGGCATTACTCCACCAATGCCATCATCTTTCGCACATCTCAGTTTTTGATAGACATTGCAAGCCTCTGAACTATTCAACAACCTTCATGTTTCGTCTTATTTCTTTGGCCTATCTCCTATGGTTCGACCTTCCATTATTGTGCAGTGACGTGAAATAGGGGCAATCTGTGATAGGAGTATAGTTTCCTCAACCCTTGGCAAGCAGTAGCAACAACAGGGTTTCCTCAACACACAAGCCTTAGATATTAGATAATATCCCCCTTCATGTTTCCGTCTCCCCTATTGAGATTTCTTCCGGTTCTCTGGTGTTGGAGCTTGTAAATCGATTTCATTCCTATGCATTTTGCCCACCGTTTGGCATTTGTCTTTGGTTTCATCACCAAACTATTCTATCTCTGTTCTTATCGCTTATTTTGATAGGTTATTTATGTAACTTTTACACTGCATCAATGAAACCATTTTGTTTCCTATATATATATATACTTATATAATTGCCGTGGTGGTGAAAGAATAGTGGATAAGAAAAGAGTTTAATGAATGTCGATTGTTGCGGATTTCTAGACACACTGAACACCTTCAACCAAACCAAGCTATGATACATATCAAGTTTGAGAGGATGAATACTTTCTCATGTATGGAATCTCTCTTAAATTTTGGAATACTTACACAGTTACAAGAGTAGTTAAACTAAGTATGAGCAAGTACAAGTAACTTTAGCCATACAACTAACTATATATCTTGTTAGTTACCAAAGAAAGTTCAAATGTTCTGTTGTTTTACCATAGGGGTGAACTTATTCTACAAACGATCTCATGAAACAGATTTTCTGCATCTGTTCTCAGCTTTTTCTTTCTTGATTCAGCTTTATGTACCTGGATGCACAAGTTTGACTCCTGGAGGAGTGGTTAAGGCAGTGGGGACTCTATCTCAACATTCTCACAATTTGAAGAGCCTAATGATTGATGGCATTTACAAAATAAAGAAAGATGAACACCTTGAAGTCCTCAAAGGCTATCTTCTCATCAACCGATCACAACAACTACAACAGAAGCAGCAGCAGCAGCAACAACAACAACATATCCTATACCACGAGCATATCGACCGACCAAAGTTGTTGAGTGACGAATACCAGCCGATAATTGATGTACAAATCTGCCCAAAATGCTATGAGATAGGGAGAGTTTATGATTGCTCAAGGGAGACATGCAAGATAAAGAGAGAGGAGAAATTGCCGGTGGAGTGCCGGGGTTGCAGTCATTGCATTCCTAGGTGCGAAGAATGCGGTGGATGCGTGAATAAATATGATGAACTAGAAGAGGTTGTTTGTGCAGGTATCTTGTGTTCAAGTTGCTGGCTTCAACTTCCCAAATGCAACCATTGTAATAGGCCATATTGCAAGCGACACTCGGATAATGTAAGTACCTCTGCAGCTGGTTTTGTTTGTGAAGTTTGTCTTGAAACTCAGGGTCTAGGGCCTATTTTGAATGACTTTCCAAACCCAAGAGCATGTTTGGAATGAATTTTCGAGTGCTTAAAAAAGAGGTTTAGAATGACTTTTAAGGGGGTATTTTGAGCTAGGAGAATACAAATGATAATGGAAAAAATGAAAATTAGGAAGAGAATACGAAGGAGAATGATTATCGGGGAGAATGATTCTATGTGTTGGGGATGAAGAGAATGATTATGGTGAAGAGAATAATCATAAGAAGAAGAAAATAGTGAGTATGAGAAGAGTAAAAAGTAGATACAGGTAGAATGAAAAGTGGCTATGGGAAAATAAAAAGTAAATATAGATGTAATAAAAAGTGTTCATTGAGAAATGAGATCATGGGGAGAATGTTCTCGGTTGCCCAAACGTGGGTTAGAAGATCATCCTCCCCATAACCATTCTCATTCTACTTCCTCCAAAACGCGTGGAAAGTCATTCCTAATAGGCCTTTAGTATGGTTGAGTTGTCATCTAAATTTAGATTGAAACAGGAAGTTCGTGTTTGCTTTTCTATATCTTGCCATTTGAACTTAGATTGTAAGGACTGAAGCCCTTGTTTTCATCTTGCTTTAAATATGTACATCTTGGAAACTAAAAGGAAAGTTGTAA

mRNA sequence

GTGTAAGTGAAGGTAGCTTACTCATCCACACAAAAATGATCTCCCAATTTCATAACCACAAAGCCAGCAGAGAAGGAAGCCGAAGAATTCACCGCCATGTCTGAGAATCAAGAACCACCAAATCCGGCCACCGCCGCCGCCGGAAGTTCATCGATCGAACCAGCGCCGCCGCACGAGGCGTTGTTCCTTGTACTGAGTCATCTTCCTCTTTTCGAGCTTCTTTCCATGAGCGCAGTCTGCGTTTCGCTCAGAGATGCAGTGGAACACGACGTGTTGCTGTGGCTTCACATCGTCGTCGATCGGCCGTTGAACAGCCGCCTGTCCGATCGAATCCTCCGCCGAATCTCCAGAAAGGCCGACGGTCGCCTTAGAACTATGGCTTTGATCAACTGTTTCAGGATTTCTGATTCTGGACTTTGCGATGTTGTTGAGAAGAATCCTCTTCTCACTAAGCTTTATGTACCTGGATGCACAAGTTTGACTCCTGGAGGAGTGGTTAAGGCAGTGGGGACTCTATCTCAACATTCTCACAATTTGAAGAGCCTAATGATTGATGGCATTTACAAAATAAAGAAAGATGAACACCTTGAAGTCCTCAAAGGCTATCTTCTCATCAACCGATCACAACAACTACAACAGAAGCAGCAGCAGCAGCAACAACAACAACATATCCTATACCACGAGCATATCGACCGACCAAAGTTGTTGAGTGACGAATACCAGCCGATAATTGATGTACAAATCTGCCCAAAATGCTATGAGATAGGGAGAGTTTATGATTGCTCAAGGGAGACATGCAAGATAAAGAGAGAGGAGAAATTGCCGGTGGAGTGCCGGGGTTGCAGTCATTGCATTCCTAGGTGCGAAGAATGCGGTGGATGCGTGAATAAATATGATGAACTAGAAGAGGTTGTTTGTGCAGGTATCTTGTGTTCAAGTTGCTGGCTTCAACTTCCCAAATGCAACCATTGTAATAGGCCATATTGCAAGCGACACTCGGATAATGTAAGTACCTCTGCAGCTGGTTTTGTTTGTGAAGTTTGTCTTGAAACTCAGGGTCTAGGGCCTATTTTGAATGACTTTCCAAACCCAAGAGCATGTTTGGAATGAATTTTCGAGTGCTTAAAAAAGAGGTTTAGAATGACTTTTAAGGGGGTATTTTGAGCTAGGAGAATACAAATGATAATGGAAAAAATGAAAATTAGGAAGAGAATACGAAGGAGAATGATTATCGGGGAGAATGATTCTATGTGTTGGGGATGAAGAGAATGATTATGGTGAAGAGAATAATCATAAGAAGAAGAAAATAGTGAGTATGAGAAGAGTAAAAAGTAGATACAGGTAGAATGAAAAGTGGCTATGGGAAAATAAAAAGTAAATATAGATGTAATAAAAAGTGTTCATTGAGAAATGAGATCATGGGGAGAATGTTCTCGGTTGCCCAAACGTGGGTTAGAAGATCATCCTCCCCATAACCATTCTCATTCTACTTCCTCCAAAACGCGTGGAAAGTCATTCCTAATAGGCCTTTAGTATGGTTGAGTTGTCATCTAAATTTAGATTGAAACAGGAAGTTCGTGTTTGCTTTTCTATATCTTGCCATTTGAACTTAGATTGTAAGGACTGAAGCCCTTGTTTTCATCTTGCTTTAAATATGTACATCTTGGAAACTAAAAGGAAAGTTGTAA

Coding sequence (CDS)

ATGTCTGAGAATCAAGAACCACCAAATCCGGCCACCGCCGCCGCCGGAAGTTCATCGATCGAACCAGCGCCGCCGCACGAGGCGTTGTTCCTTGTACTGAGTCATCTTCCTCTTTTCGAGCTTCTTTCCATGAGCGCAGTCTGCGTTTCGCTCAGAGATGCAGTGGAACACGACGTGTTGCTGTGGCTTCACATCGTCGTCGATCGGCCGTTGAACAGCCGCCTGTCCGATCGAATCCTCCGCCGAATCTCCAGAAAGGCCGACGGTCGCCTTAGAACTATGGCTTTGATCAACTGTTTCAGGATTTCTGATTCTGGACTTTGCGATGTTGTTGAGAAGAATCCTCTTCTCACTAAGCTTTATGTACCTGGATGCACAAGTTTGACTCCTGGAGGAGTGGTTAAGGCAGTGGGGACTCTATCTCAACATTCTCACAATTTGAAGAGCCTAATGATTGATGGCATTTACAAAATAAAGAAAGATGAACACCTTGAAGTCCTCAAAGGCTATCTTCTCATCAACCGATCACAACAACTACAACAGAAGCAGCAGCAGCAGCAACAACAACAACATATCCTATACCACGAGCATATCGACCGACCAAAGTTGTTGAGTGACGAATACCAGCCGATAATTGATGTACAAATCTGCCCAAAATGCTATGAGATAGGGAGAGTTTATGATTGCTCAAGGGAGACATGCAAGATAAAGAGAGAGGAGAAATTGCCGGTGGAGTGCCGGGGTTGCAGTCATTGCATTCCTAGGTGCGAAGAATGCGGTGGATGCGTGAATAAATATGATGAACTAGAAGAGGTTGTTTGTGCAGGTATCTTGTGTTCAAGTTGCTGGCTTCAACTTCCCAAATGCAACCATTGTAATAGGCCATATTGCAAGCGACACTCGGATAATGTAAGTACCTCTGCAGCTGGTTTTGTTTGTGAAGTTTGTCTTGAAACTCAGGGTCTAGGGCCTATTTTGAATGACTTTCCAAACCCAAGAGCATGTTTGGAATGA

Protein sequence

MSENQEPPNPATAAAGSSSIEPAPPHEALFLVLSHLPLFELLSMSAVCVSLRDAVEHDVLLWLHIVVDRPLNSRLSDRILRRISRKADGRLRTMALINCFRISDSGLCDVVEKNPLLTKLYVPGCTSLTPGGVVKAVGTLSQHSHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRSQQLQQKQQQQQQQQHILYHEHIDRPKLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKIKREEKLPVECRGCSHCIPRCEECGGCVNKYDELEEVVCAGILCSSCWLQLPKCNHCNRPYCKRHSDNVSTSAAGFVCEVCLETQGLGPILNDFPNPRACLE

Homology

[Close]

BLAST of Sed0015068 vs. NCBI nr
Match: XP_038906463.1 (F-box protein SKIP28 [Benincasa hispida])

HSP 1 Score: 484.2 bits (1245), Expect = 9.2e-133
Identity = 251/324 (77.47%), Postives = 276/324 (85.19%), Query Frame = 0


Query: 1   MSENQEPPNPATAAAGSS----SIEPAPPHEALFLVLSHLPLFELLSMSAVCVSLRDAVE 60
           MSENQEP NPA AAAGSS     IE  PPHEALFLVLS+LPLFELLSMS+VCVSLRDAVE
Sbjct: 30  MSENQEPQNPA-AAAGSSFPGVRIEAGPPHEALFLVLSYLPLFELLSMSSVCVSLRDAVE 89

Query: 61  HDVLLWLHIVVDRPLNSRLSDRILRRISRKADGRLRTMALINCFRISDSGLCDVVEKNPL 120
           HDVL WLHIVVDR L+SRLSD  L RI+RKA GRLRT+ALINCF+ISDSG  +VVEKNPL
Sbjct: 90  HDVLPWLHIVVDRRLSSRLSDYRLGRIARKAGGRLRTLALINCFKISDSGFHEVVEKNPL 149

Query: 121 LTKLYVPGCTSLTPGGVVKAVGTLSQHSHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRS 180
           LTKLYVPGCTSLTPGGVV+AV TLSQHSHNLKSLMI GIY I ++EHLEVLK +LL NRS
Sbjct: 150 LTKLYVPGCTSLTPGGVVRAVKTLSQHSHNLKSLMIGGIYNI-ENEHLEVLKCHLLENRS 209

Query: 181 QQLQQKQQQQQQQQHILYHEHIDRPKLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKI 240
                 QQQ+++QQH LY EHIDR KLLS+E+QP+IDVQICPKC EI  VYDCSRE CKI
Sbjct: 210 -----LQQQEERQQHHLYREHIDRSKLLSNEFQPVIDVQICPKCSEIRSVYDCSRERCKI 269

Query: 241 KREEKLPVECRGCSHCIPRCEECGGCVNKYDELEEVVCAGILCSSCWLQLPKCNHCNRPY 300
           K+E++L  +CRGC  CIPRCEECGGCV+  DE+EE VCAGILCSSCWLQLPKCNHCNRPY
Sbjct: 270 KQEKQLLADCRGCISCIPRCEECGGCVDD-DEIEEAVCAGILCSSCWLQLPKCNHCNRPY 329

Query: 301 CKRHSDNVSTSAAGFVCEVCLETQ 321
           C RH  NVS+S  GFVCE+CLETQ
Sbjct: 330 CTRHCQNVSSSTTGFVCEICLETQ 345

[Close]

BLAST of Sed0015068 vs. NCBI nr
Match: KAA0046341.1 (F-box protein SKIP28 isoform X1 [Cucumis melo var. makuwa] >TYK30504.1 F-box protein SKIP28 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 460.7 bits (1184), Expect = 1.1e-125
Identity = 232/319 (72.73%), Postives = 264/319 (82.76%), Query Frame = 0


Query: 1   MSENQEPPNPATAAAGSSSIEPAPPHEALFLVLSHLPLFELLSMSAVCVSLRDAVEHDVL 60
           MSENQEPPNPA  A      E  PPHEALF V+S+L LFELLSMSAVCVSLRDAVEHDVL
Sbjct: 1   MSENQEPPNPAAVA------EAGPPHEALFHVVSYLSLFELLSMSAVCVSLRDAVEHDVL 60

Query: 61  LWLHIVVDRPLNSRLSDRILRRISRKADGRLRTMALINCFRISDSGLCDVVEKNPLLTKL 120
            WLHIVVD  L+SRLSD  L RI+RKA GRLRT+ALI+CF+ISDSGL +VVE NPLLTKL
Sbjct: 61  PWLHIVVDGRLSSRLSDYTLGRIARKAGGRLRTLALIDCFKISDSGLHEVVENNPLLTKL 120

Query: 121 YVPGCTSLTPGGVVKAVGTLSQHSHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRSQQLQ 180
           YVPGCTSLTP GVV+AV T SQHSHNLK+LMI GIY I ++ HLEVL+ +LL NRS    
Sbjct: 121 YVPGCTSLTPAGVVRAVKTSSQHSHNLKNLMIGGIYNI-ENHHLEVLRSHLLENRS---- 180

Query: 181 QKQQQQQQQQHILYHEHIDRPKLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKIKREE 240
           Q +QQ+ +Q H LYHEH+DRP LLS+++ P+IDVQICPKCY+I  VYDCSRE CKIK+ E
Sbjct: 181 QNKQQEWRQVHHLYHEHVDRPNLLSNDFLPLIDVQICPKCYDIRNVYDCSRERCKIKQGE 240

Query: 241 KLPVECRGCSHCIPRCEECGGCVNKYDELEEVVCAGILCSSCWLQLPKCNHCNRPYCKRH 300
            L  +CRGC  C+PRCEECGGCV+  DE+EE +C GI+CSSCWLQLPKCNHCNRPYCKRH
Sbjct: 241 NLLADCRGCISCMPRCEECGGCVD-VDEIEEAICPGIVCSSCWLQLPKCNHCNRPYCKRH 300

Query: 301 SDNVSTSAAGFVCEVCLET 320
            DNVS+S AGFVCE+CLET
Sbjct: 301 RDNVSSSTAGFVCEICLET 307

[Close]

BLAST of Sed0015068 vs. NCBI nr
Match: KAG6579265.1 (F-box protein SKIP28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 460.3 bits (1183), Expect = 1.4e-125
Identity = 239/324 (73.77%), Postives = 270/324 (83.33%), Query Frame = 0


Query: 1   MSENQEPPNPATAAAGSSS----IEPAPPHEALFLVLSHLPLFELLSMSAVCVSLRDAVE 60
           MSEN++ PN   A  GSSS    I   PPHEALFLVLS+LPLFELLSM AVCVSLRDAVE
Sbjct: 1   MSENKKFPN-QVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFELLSMGAVCVSLRDAVE 60

Query: 61  HDVLLWLHIVVDRPLNSRLSDRILRRISRKADGRLRTMALINCFRISDSGLCDVVEKNPL 120
           HDVL WLH+VVDRPL+SRL+D IL RI+RKADGRLRT+ALINCF+ISDS L  VVE NPL
Sbjct: 61  HDVLPWLHLVVDRPLSSRLNDYILGRIARKADGRLRTLALINCFKISDSALHQVVENNPL 120

Query: 121 LTKLYVPGCTSLTPGGVVKAVGTLSQHSHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRS 180
           LTKLYVPGCTSLTP GV++AV TLSQHSHNL SLMI GIY I ++EHLEVLK +LL NRS
Sbjct: 121 LTKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNI-ENEHLEVLKYHLLKNRS 180

Query: 181 QQLQQKQQQQQQQQHILYHEHIDRPKLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKI 240
           +Q    QQQQQQQ+ + +HEHI+  KLL +EY  +IDV++CPKC EIGRVYDCSRE CKI
Sbjct: 181 EQ----QQQQQQQRRLYHHEHIEASKLLRNEYVAMIDVEMCPKCEEIGRVYDCSRERCKI 240

Query: 241 KREEKLPVECRGCSHCIPRCEECGGCVNKYDELEEVVCAGILCSSCWLQLPKCNHCNRPY 300
           K+E+K   ECRGCS C+PRCEECGGCV+  DE EE VCAGILC+SCWLQLPKCNHCNRPY
Sbjct: 241 KQEQKSGAECRGCSGCVPRCEECGGCVDG-DETEEAVCAGILCTSCWLQLPKCNHCNRPY 300

Query: 301 CKRHSDN-VSTSAAGFVCEVCLET 320
           C RH  N VS++AAGFVCEVC+ET
Sbjct: 301 CTRHCQNVVSSTAAGFVCEVCIET 317

[Close]

BLAST of Sed0015068 vs. NCBI nr
Match: XP_004150124.1 (F-box protein SKIP28 [Cucumis sativus])

HSP 1 Score: 459.9 bits (1182), Expect = 1.9e-125
Identity = 231/319 (72.41%), Postives = 265/319 (83.07%), Query Frame = 0


Query: 1   MSENQEPPNPATAAAGSSSIEPAPPHEALFLVLSHLPLFELLSMSAVCVSLRDAVEHDVL 60
           MSENQEPPNPA+ A      E  PPHEALF V+++LPLFELLS+SAVCVSLRDAVEHDVL
Sbjct: 30  MSENQEPPNPASVA------EAGPPHEALFHVMTYLPLFELLSLSAVCVSLRDAVEHDVL 89

Query: 61  LWLHIVVDRPLNSRLSDRILRRISRKADGRLRTMALINCFRISDSGLCDVVEKNPLLTKL 120
            WLHIVVD  L+SRLSD  L RI+RKA GRLRT+ALINCF+ISDSGL +VVE NPLLTKL
Sbjct: 90  PWLHIVVDGRLSSRLSDYTLGRIARKASGRLRTLALINCFKISDSGLHEVVENNPLLTKL 149

Query: 121 YVPGCTSLTPGGVVKAVGTLSQHSHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRSQQLQ 180
           YVPGCTSLTP GVV+AV TLSQ SHNLK+LMI GIY I +++HLEVL+ +LL NRS    
Sbjct: 150 YVPGCTSLTPEGVVRAVKTLSQDSHNLKNLMIGGIYNI-ENQHLEVLRSHLLENRS---- 209

Query: 181 QKQQQQQQQQHILYHEHIDRPKLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKIKREE 240
             +QQ+ +Q H LYHEH+DRP+LLS ++ P+IDVQICPKCY+I  VYDCSRE CKIK+ E
Sbjct: 210 LNKQQEWRQVHHLYHEHVDRPRLLSSDFLPVIDVQICPKCYDIRNVYDCSRERCKIKQGE 269

Query: 241 KLPVECRGCSHCIPRCEECGGCVNKYDELEEVVCAGILCSSCWLQLPKCNHCNRPYCKRH 300
            L  +CRGC  CIPRCEECGGCV+  DE+EE +C+ ILCSSCW QLPKCNHCNRPYCKRH
Sbjct: 270 NLLADCRGCICCIPRCEECGGCVDD-DEIEEAICSDILCSSCWFQLPKCNHCNRPYCKRH 329

Query: 301 SDNVSTSAAGFVCEVCLET 320
            DNVS+S AGFVCE+CLET
Sbjct: 330 RDNVSSSTAGFVCEICLET 336

[Close]

BLAST of Sed0015068 vs. NCBI nr
Match: XP_022939676.1 (F-box protein SKIP28 [Cucurbita moschata])

HSP 1 Score: 458.0 bits (1177), Expect = 7.1e-125
Identity = 238/324 (73.46%), Postives = 268/324 (82.72%), Query Frame = 0


Query: 1   MSENQEPPNPATAAAGSSS----IEPAPPHEALFLVLSHLPLFELLSMSAVCVSLRDAVE 60
           MSEN + PN   A  GSSS    I   PPHEALFLVLS+LPLFELLSM AVCVSLRDAV 
Sbjct: 1   MSENNKFPN-QVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFELLSMGAVCVSLRDAVA 60

Query: 61  HDVLLWLHIVVDRPLNSRLSDRILRRISRKADGRLRTMALINCFRISDSGLCDVVEKNPL 120
           HDVL WLH+VVDRPL+SRL+D IL RI+RKADGRLRT+ALINCF+ISDS L +VVE NPL
Sbjct: 61  HDVLPWLHLVVDRPLSSRLNDYILGRIARKADGRLRTLALINCFKISDSALHEVVENNPL 120

Query: 121 LTKLYVPGCTSLTPGGVVKAVGTLSQHSHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRS 180
           LTKLYVPGCTSLTP GV++AV TLSQHSHNL SLMI GIY I ++EHLEVLK +LL NRS
Sbjct: 121 LTKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNI-ENEHLEVLKYHLLKNRS 180

Query: 181 QQLQQKQQQQQQQQHILYHEHIDRPKLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKI 240
           Q     QQQQQQQ+ + +HEHI+  KLL ++Y  +IDV++CPKC EIGRVYDCSRE CKI
Sbjct: 181 Q-----QQQQQQQRRLYHHEHIEASKLLRNKYVAMIDVEMCPKCQEIGRVYDCSRERCKI 240

Query: 241 KREEKLPVECRGCSHCIPRCEECGGCVNKYDELEEVVCAGILCSSCWLQLPKCNHCNRPY 300
           K+E+K   ECRGCS C+PRCEECGGCV+  DE EE VCAGILC+SCWLQLPKCNHCNRPY
Sbjct: 241 KQEQKSGAECRGCSGCVPRCEECGGCVDG-DETEEAVCAGILCTSCWLQLPKCNHCNRPY 300

Query: 301 CKRHSDNV-STSAAGFVCEVCLET 320
           C RH  NV S+SAAGFVCEVC+ET
Sbjct: 301 CTRHCQNVGSSSAAGFVCEVCIET 316

[Close]

BLAST of Sed0015068 vs. ExPASy Swiss-Prot
Match: Q9ZU90 (F-box protein SKIP28 OS=Arabidopsis thaliana OX=3702 GN=SKIP28 PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.0e-54
Identity = 121/315 (38.41%), Postives = 167/315 (53.02%), Query Frame = 0


Query: 26  HEALFLVLSHL-PLFELLSMSAVCVSLRDAVEHDVLLWLHIVVDRPLNSRLSDRILRRIS 85
           HE L +VL +L  LFELLSM  V  SLRDA+  +  LW  +V++ PL+SRL+D IL   S
Sbjct: 17  HEVLLIVLPYLHSLFELLSMIRVSRSLRDAIRDETALWTKLVIEPPLSSRLTDDILSEFS 76

Query: 86  RKADGRLRTMALINCFRISDSGLCDVVEKNPLLTKLYVPGCTSLTPGGVVKAVGTLSQHS 145
            K+ G+L+T+ L  C  +++ GL  VV+ NPL+TK+ VPGC+ LTP G+++ V +LS+++
Sbjct: 77  SKSAGKLKTLILRQCLMVTNKGLRRVVDANPLITKIIVPGCSGLTPEGIMECVESLSKNN 136

Query: 146 HNLKSLMIDGIYKIKKDEHLEVLKGYLLINRSQQLQQKQQQQQQQQHILYHEHIDRPKLL 205
           H L++L I+G+    K +HL  L  YL                                 
Sbjct: 137 HKLETLHINGVNGFTK-QHLSALYTYL--------------------------------- 196

Query: 206 SDEYQPIIDVQICPKCYEIGRVYDCSRETCKIKREEKLPVECRGCSHCIPRCEECGGC-V 265
               +  ID+++CPKC E+  +  CSRE+C  K+      +CRGC  CIPRC EC  C V
Sbjct: 197 --SSEGTIDLEVCPKCDEVRMIPSCSRESCNQKQR-----KCRGCWLCIPRCAECAVCLV 256

Query: 266 NKYDELEEVVCAG--ILCSSCWLQLPKCNHCNRPYCKRHSD-------NVSTSAAGFVCE 325
               E +E  C    +LC  CWL LPKC  CN+PYC  HS          + S   F CE
Sbjct: 257 GSDTESQEAACGNDDVLCLECWLVLPKCRFCNKPYCTNHSSRRHEIAITDAASRPSFECE 290

Query: 326 VCLETQGLGPILNDF 330
            C    G  P   D+
Sbjct: 317 ACYYRAGTNPYEVDY 290

[Close]

BLAST of Sed0015068 vs. ExPASy Swiss-Prot
Match: Q9LU91 (F-box protein SKIP14 OS=Arabidopsis thaliana OX=3702 GN=SKIP14 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.9e-35
Identity = 95/269 (35.32%), Postives = 143/269 (53.16%), Query Frame = 0


Query: 21  EPAPPHEALFLVLSHLPLFELLSMSAVCVSLRDAVEHDVLLWLHIVVDRPLNSRLSDRIL 80
           E A  H A+   L HL   +LLS+S VC SL   V  D LLW HI + RPLN ++++  L
Sbjct: 196 EDAYVHPAIGFCLYHLRGKDLLSVSMVCKSLHTTVCDDTLLWKHIHICRPLNEKITEEAL 255

Query: 81  RRISRKADGRLRTMALINCFRISDSGLCDVVEKNPLLTKLYVPGCTSLTPGGVVKAVGTL 140
             ++ +A G ++ + +++C RI+D  L  VV +N  + K+ VPGCT +T  G++  +  L
Sbjct: 256 LHLTERAQGTMQCLRIVDCCRITDDCLKRVVARNRQVVKIGVPGCTRITIDGILSVLRDL 315

Query: 141 -SQHSHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRSQQLQQKQQQQQQQQHILYHEHID 200
            S     +K L + G++ + KD + E++    + N+ +Q  QK +         YH    
Sbjct: 316 KSAGKLQVKHLQLRGLFGVTKDHYDELIDLLNIDNKVKQTIQKPR--------FYHR--- 375

Query: 201 RPKLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKIKREEKLPVECRGCSHCIPRCEEC 260
               +S +    +D+++CPKC     VYDC  E CK K+  K   ECR CS CI RC  C
Sbjct: 376 GEACVSCDDDRALDIEMCPKCQNFKLVYDCPAEDCKGKK--KGSEECRACSLCIQRCYHC 435

Query: 261 GGCVNKYDELEEVVCAGILCSSCWLQLPK 289
           G C+    E EE+ C  +LC+ C    PK
Sbjct: 436 GRCIID-TEYEEMFCLELLCAVCSKPTPK 450

[Close]

BLAST of Sed0015068 vs. ExPASy Swiss-Prot
Match: Q9LK24 (F-box protein At3g27290 OS=Arabidopsis thaliana OX=3702 GN=At3g27290 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-24
Identity = 87/262 (33.21%), Postives = 133/262 (50.76%), Query Frame = 0


Query: 26  HEALFLVLSHLPLFELLSMSAVCVSLRDAVEHDVLLWLHI-VVDRPLNSRLSDRILRRIS 85
           H+A  LVL +L L E+L++  VC SLRD+V  +   W  I + D  L  R++D  L +++
Sbjct: 128 HDAFELVLPYLELKEILAVEVVCRSLRDSVGKEPFFWTSIDLNDSFLQYRVTDESLLKLT 187

Query: 86  RKADGRLRTMALINCFRISDSGLCDVVEKNPLLTKLYVPGCTSLTPGGVVKAVGTL-SQH 145
           R+A G +R + L  C  I+D GL  V+  NP LTKL V GC  L+  G+V  +  L S +
Sbjct: 188 RRALGGVRCLNLGGCVGITDYGLKQVLASNPHLTKLSVSGCLRLSTAGLVSTLRDLKSSN 247

Query: 146 SHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRSQQ--LQQKQQQQQQQQHILYHEHIDRP 205
              +KSL+  G     K++  E+    LL+    +  LQ+++++        ++   DR 
Sbjct: 248 RLGVKSLITGGALYFTKEQFKEL---NLLLGGDAKVGLQERKKRFYTSCRSEFYLEDDR- 307

Query: 206 KLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKIKREEKL-PVECRGCSHCIPRCEECG 265
                    + D++ICP C +   V+DC  +TC +K +       CR C  CI RC ECG
Sbjct: 308 ---------VTDLEICPWCEKPSLVFDCPADTCPLKGQYPYSKSSCRACVVCIERCHECG 367

Query: 266 GCVNKYDELEEVVCAGILCSSC 283
            C+N  D   +  C    C  C
Sbjct: 368 SCLN--DCENKPFCFAFSCVVC 374

[Close]

BLAST of Sed0015068 vs. ExPASy TrEMBL
Match: A0A5A7TYB5 (F-box protein SKIP28 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00470 PE=4 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 5.3e-126
Identity = 232/319 (72.73%), Postives = 264/319 (82.76%), Query Frame = 0


Query: 1   MSENQEPPNPATAAAGSSSIEPAPPHEALFLVLSHLPLFELLSMSAVCVSLRDAVEHDVL 60
           MSENQEPPNPA  A      E  PPHEALF V+S+L LFELLSMSAVCVSLRDAVEHDVL
Sbjct: 1   MSENQEPPNPAAVA------EAGPPHEALFHVVSYLSLFELLSMSAVCVSLRDAVEHDVL 60

Query: 61  LWLHIVVDRPLNSRLSDRILRRISRKADGRLRTMALINCFRISDSGLCDVVEKNPLLTKL 120
            WLHIVVD  L+SRLSD  L RI+RKA GRLRT+ALI+CF+ISDSGL +VVE NPLLTKL
Sbjct: 61  PWLHIVVDGRLSSRLSDYTLGRIARKAGGRLRTLALIDCFKISDSGLHEVVENNPLLTKL 120

Query: 121 YVPGCTSLTPGGVVKAVGTLSQHSHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRSQQLQ 180
           YVPGCTSLTP GVV+AV T SQHSHNLK+LMI GIY I ++ HLEVL+ +LL NRS    
Sbjct: 121 YVPGCTSLTPAGVVRAVKTSSQHSHNLKNLMIGGIYNI-ENHHLEVLRSHLLENRS---- 180

Query: 181 QKQQQQQQQQHILYHEHIDRPKLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKIKREE 240
           Q +QQ+ +Q H LYHEH+DRP LLS+++ P+IDVQICPKCY+I  VYDCSRE CKIK+ E
Sbjct: 181 QNKQQEWRQVHHLYHEHVDRPNLLSNDFLPLIDVQICPKCYDIRNVYDCSRERCKIKQGE 240

Query: 241 KLPVECRGCSHCIPRCEECGGCVNKYDELEEVVCAGILCSSCWLQLPKCNHCNRPYCKRH 300
            L  +CRGC  C+PRCEECGGCV+  DE+EE +C GI+CSSCWLQLPKCNHCNRPYCKRH
Sbjct: 241 NLLADCRGCISCMPRCEECGGCVD-VDEIEEAICPGIVCSSCWLQLPKCNHCNRPYCKRH 300

Query: 301 SDNVSTSAAGFVCEVCLET 320
            DNVS+S AGFVCE+CLET
Sbjct: 301 RDNVSSSTAGFVCEICLET 307

[Close]

BLAST of Sed0015068 vs. ExPASy TrEMBL
Match: A0A0A0KSU6 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G566290 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 9.0e-126
Identity = 231/319 (72.41%), Postives = 265/319 (83.07%), Query Frame = 0


Query: 1   MSENQEPPNPATAAAGSSSIEPAPPHEALFLVLSHLPLFELLSMSAVCVSLRDAVEHDVL 60
           MSENQEPPNPA+ A      E  PPHEALF V+++LPLFELLS+SAVCVSLRDAVEHDVL
Sbjct: 30  MSENQEPPNPASVA------EAGPPHEALFHVMTYLPLFELLSLSAVCVSLRDAVEHDVL 89

Query: 61  LWLHIVVDRPLNSRLSDRILRRISRKADGRLRTMALINCFRISDSGLCDVVEKNPLLTKL 120
            WLHIVVD  L+SRLSD  L RI+RKA GRLRT+ALINCF+ISDSGL +VVE NPLLTKL
Sbjct: 90  PWLHIVVDGRLSSRLSDYTLGRIARKASGRLRTLALINCFKISDSGLHEVVENNPLLTKL 149

Query: 121 YVPGCTSLTPGGVVKAVGTLSQHSHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRSQQLQ 180
           YVPGCTSLTP GVV+AV TLSQ SHNLK+LMI GIY I +++HLEVL+ +LL NRS    
Sbjct: 150 YVPGCTSLTPEGVVRAVKTLSQDSHNLKNLMIGGIYNI-ENQHLEVLRSHLLENRS---- 209

Query: 181 QKQQQQQQQQHILYHEHIDRPKLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKIKREE 240
             +QQ+ +Q H LYHEH+DRP+LLS ++ P+IDVQICPKCY+I  VYDCSRE CKIK+ E
Sbjct: 210 LNKQQEWRQVHHLYHEHVDRPRLLSSDFLPVIDVQICPKCYDIRNVYDCSRERCKIKQGE 269

Query: 241 KLPVECRGCSHCIPRCEECGGCVNKYDELEEVVCAGILCSSCWLQLPKCNHCNRPYCKRH 300
            L  +CRGC  CIPRCEECGGCV+  DE+EE +C+ ILCSSCW QLPKCNHCNRPYCKRH
Sbjct: 270 NLLADCRGCICCIPRCEECGGCVDD-DEIEEAICSDILCSSCWFQLPKCNHCNRPYCKRH 329

Query: 301 SDNVSTSAAGFVCEVCLET 320
            DNVS+S AGFVCE+CLET
Sbjct: 330 RDNVSSSTAGFVCEICLET 336

[Close]

BLAST of Sed0015068 vs. ExPASy TrEMBL
Match: A0A6J1FGL5 (F-box protein SKIP28 OS=Cucurbita moschata OX=3662 GN=LOC111445493 PE=4 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 3.4e-125
Identity = 238/324 (73.46%), Postives = 268/324 (82.72%), Query Frame = 0


Query: 1   MSENQEPPNPATAAAGSSS----IEPAPPHEALFLVLSHLPLFELLSMSAVCVSLRDAVE 60
           MSEN + PN   A  GSSS    I   PPHEALFLVLS+LPLFELLSM AVCVSLRDAV 
Sbjct: 1   MSENNKFPN-QVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFELLSMGAVCVSLRDAVA 60

Query: 61  HDVLLWLHIVVDRPLNSRLSDRILRRISRKADGRLRTMALINCFRISDSGLCDVVEKNPL 120
           HDVL WLH+VVDRPL+SRL+D IL RI+RKADGRLRT+ALINCF+ISDS L +VVE NPL
Sbjct: 61  HDVLPWLHLVVDRPLSSRLNDYILGRIARKADGRLRTLALINCFKISDSALHEVVENNPL 120

Query: 121 LTKLYVPGCTSLTPGGVVKAVGTLSQHSHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRS 180
           LTKLYVPGCTSLTP GV++AV TLSQHSHNL SLMI GIY I ++EHLEVLK +LL NRS
Sbjct: 121 LTKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNI-ENEHLEVLKYHLLKNRS 180

Query: 181 QQLQQKQQQQQQQQHILYHEHIDRPKLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKI 240
           Q     QQQQQQQ+ + +HEHI+  KLL ++Y  +IDV++CPKC EIGRVYDCSRE CKI
Sbjct: 181 Q-----QQQQQQQRRLYHHEHIEASKLLRNKYVAMIDVEMCPKCQEIGRVYDCSRERCKI 240

Query: 241 KREEKLPVECRGCSHCIPRCEECGGCVNKYDELEEVVCAGILCSSCWLQLPKCNHCNRPY 300
           K+E+K   ECRGCS C+PRCEECGGCV+  DE EE VCAGILC+SCWLQLPKCNHCNRPY
Sbjct: 241 KQEQKSGAECRGCSGCVPRCEECGGCVDG-DETEEAVCAGILCTSCWLQLPKCNHCNRPY 300

Query: 301 CKRHSDNV-STSAAGFVCEVCLET 320
           C RH  NV S+SAAGFVCEVC+ET
Sbjct: 301 CTRHCQNVGSSSAAGFVCEVCIET 316

[Close]

BLAST of Sed0015068 vs. ExPASy TrEMBL
Match: A0A6J1IEZ1 (F-box protein SKIP28 OS=Cucurbita maxima OX=3661 GN=LOC111472110 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 1.3e-124
Identity = 237/324 (73.15%), Postives = 268/324 (82.72%), Query Frame = 0


Query: 1   MSENQEPPNPATAAAGSSS----IEPAPPHEALFLVLSHLPLFELLSMSAVCVSLRDAVE 60
           MSEN++ PN   A  GSSS    I   PPHEALFLVLS+LPLFELLSM AVCVSLRDAVE
Sbjct: 1   MSENKKFPN-QVAVCGSSSPGVGIAAGPPHEALFLVLSYLPLFELLSMGAVCVSLRDAVE 60

Query: 61  HDVLLWLHIVVDRPLNSRLSDRILRRISRKADGRLRTMALINCFRISDSGLCDVVEKNPL 120
           HDVL WLH+VVDRPL+SRL+D IL RI+RKADGRLRT+ALINCF+ISDS L +VV+ NPL
Sbjct: 61  HDVLPWLHLVVDRPLSSRLNDYILGRIARKADGRLRTLALINCFKISDSALHEVVQNNPL 120

Query: 121 LTKLYVPGCTSLTPGGVVKAVGTLSQHSHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRS 180
           LTKLYVPGCTSLTP GV++AV TLSQHSHNL SLMI GIY I ++EHLEVLK YLL NRS
Sbjct: 121 LTKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNI-ENEHLEVLKYYLLKNRS 180

Query: 181 QQLQQKQQQQQQQQHILYHEHIDRPKLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKI 240
           QQ    QQQQQQQQ  LYH+ I+  KLL +E   +IDV++CPKC E+GRVYDCSRE CKI
Sbjct: 181 QQ----QQQQQQQQRRLYHKDIEASKLLRNECVAMIDVEMCPKCQEMGRVYDCSRERCKI 240

Query: 241 KREEKLPVECRGCSHCIPRCEECGGCVNKYDELEEVVCAGILCSSCWLQLPKCNHCNRPY 300
           K+E+K   ECRGCS C+PRCEECGGCV+  DE EE VC G+LC+SCWLQLPKCNHCN+PY
Sbjct: 241 KQEQKFGAECRGCSGCVPRCEECGGCVDG-DETEEAVCVGVLCTSCWLQLPKCNHCNKPY 300

Query: 301 CKRHSDNV-STSAAGFVCEVCLET 320
           C RH  NV S+SAAGFVCEVC+ET
Sbjct: 301 CTRHRQNVASSSAAGFVCEVCIET 317

[Close]

BLAST of Sed0015068 vs. ExPASy TrEMBL
Match: A0A1S4E4Z1 (F-box protein SKIP28 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504545 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 1.2e-117
Identity = 219/304 (72.04%), Postives = 250/304 (82.24%), Query Frame = 0


Query: 1   MSENQEPPNPATAAAGSSSIEPAPPHEALFLVLSHLPLFELLSMSAVCVSLRDAVEHDVL 60
           MSENQEPPNPA  A      E  PPHEALF V+S+L LFELLSMSAVCVSLRDAVEHDVL
Sbjct: 1   MSENQEPPNPAAVA------EAGPPHEALFHVVSYLSLFELLSMSAVCVSLRDAVEHDVL 60

Query: 61  LWLHIVVDRPLNSRLSDRILRRISRKADGRLRTMALINCFRISDSGLCDVVEKNPLLTKL 120
            WLHIVVD  L+SRLSD  L RI+RKA GRLRT+ALI+CF+ISDSGL +VVE NPLLTKL
Sbjct: 61  PWLHIVVDGRLSSRLSDYTLGRIARKAGGRLRTLALIDCFKISDSGLHEVVENNPLLTKL 120

Query: 121 YVPGCTSLTPGGVVKAVGTLSQHSHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRSQQLQ 180
           YVPGCTSLTP GVV+AV T SQHSHNLK+LMI GIY I ++ HLEVL+ +LL NRS    
Sbjct: 121 YVPGCTSLTPAGVVRAVKTSSQHSHNLKNLMIGGIYNI-ENHHLEVLRSHLLENRS---- 180

Query: 181 QKQQQQQQQQHILYHEHIDRPKLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKIKREE 240
           Q +QQ+ +Q H LYHEH+DRP LLS+++ P+IDVQICPKCY+I  VYDCSRE CKIK+ E
Sbjct: 181 QNKQQEWRQVHHLYHEHVDRPNLLSNDFLPLIDVQICPKCYDIRNVYDCSRERCKIKQGE 240

Query: 241 KLPVECRGCSHCIPRCEECGGCVNKYDELEEVVCAGILCSSCWLQLPKCNHCNRPYCKRH 300
            L  +CRGC  C+PRCEECGGCV+  DE+EE +C GI+CSSCWLQLPKCNHCNRPYCKRH
Sbjct: 241 NLLADCRGCISCMPRCEECGGCVD-VDEIEEAICPGIVCSSCWLQLPKCNHCNRPYCKRH 292

Query: 301 SDNV 305
            DN+
Sbjct: 301 RDNI 292

[Close]

BLAST of Sed0015068 vs. TAIR 10
Match: AT2G01620.1 (RNI-like superfamily protein )

HSP 1 Score: 213.4 bits (542), Expect = 2.8e-55
Identity = 121/315 (38.41%), Postives = 167/315 (53.02%), Query Frame = 0


Query: 26  HEALFLVLSHL-PLFELLSMSAVCVSLRDAVEHDVLLWLHIVVDRPLNSRLSDRILRRIS 85
           HE L +VL +L  LFELLSM  V  SLRDA+  +  LW  +V++ PL+SRL+D IL   S
Sbjct: 17  HEVLLIVLPYLHSLFELLSMIRVSRSLRDAIRDETALWTKLVIEPPLSSRLTDDILSEFS 76

Query: 86  RKADGRLRTMALINCFRISDSGLCDVVEKNPLLTKLYVPGCTSLTPGGVVKAVGTLSQHS 145
            K+ G+L+T+ L  C  +++ GL  VV+ NPL+TK+ VPGC+ LTP G+++ V +LS+++
Sbjct: 77  SKSAGKLKTLILRQCLMVTNKGLRRVVDANPLITKIIVPGCSGLTPEGIMECVESLSKNN 136

Query: 146 HNLKSLMIDGIYKIKKDEHLEVLKGYLLINRSQQLQQKQQQQQQQQHILYHEHIDRPKLL 205
           H L++L I+G+    K +HL  L  YL                                 
Sbjct: 137 HKLETLHINGVNGFTK-QHLSALYTYL--------------------------------- 196

Query: 206 SDEYQPIIDVQICPKCYEIGRVYDCSRETCKIKREEKLPVECRGCSHCIPRCEECGGC-V 265
               +  ID+++CPKC E+  +  CSRE+C  K+      +CRGC  CIPRC EC  C V
Sbjct: 197 --SSEGTIDLEVCPKCDEVRMIPSCSRESCNQKQR-----KCRGCWLCIPRCAECAVCLV 256

Query: 266 NKYDELEEVVCAG--ILCSSCWLQLPKCNHCNRPYCKRHSD-------NVSTSAAGFVCE 325
               E +E  C    +LC  CWL LPKC  CN+PYC  HS          + S   F CE
Sbjct: 257 GSDTESQEAACGNDDVLCLECWLVLPKCRFCNKPYCTNHSSRRHEIAITDAASRPSFECE 290

Query: 326 VCLETQGLGPILNDF 330
            C    G  P   D+
Sbjct: 317 ACYYRAGTNPYEVDY 290

[Close]

BLAST of Sed0015068 vs. TAIR 10
Match: AT3G26000.1 (Ribonuclease inhibitor )

HSP 1 Score: 151.4 bits (381), Expect = 1.3e-36
Identity = 95/269 (35.32%), Postives = 143/269 (53.16%), Query Frame = 0


Query: 21  EPAPPHEALFLVLSHLPLFELLSMSAVCVSLRDAVEHDVLLWLHIVVDRPLNSRLSDRIL 80
           E A  H A+   L HL   +LLS+S VC SL   V  D LLW HI + RPLN ++++  L
Sbjct: 196 EDAYVHPAIGFCLYHLRGKDLLSVSMVCKSLHTTVCDDTLLWKHIHICRPLNEKITEEAL 255

Query: 81  RRISRKADGRLRTMALINCFRISDSGLCDVVEKNPLLTKLYVPGCTSLTPGGVVKAVGTL 140
             ++ +A G ++ + +++C RI+D  L  VV +N  + K+ VPGCT +T  G++  +  L
Sbjct: 256 LHLTERAQGTMQCLRIVDCCRITDDCLKRVVARNRQVVKIGVPGCTRITIDGILSVLRDL 315

Query: 141 -SQHSHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRSQQLQQKQQQQQQQQHILYHEHID 200
            S     +K L + G++ + KD + E++    + N+ +Q  QK +         YH    
Sbjct: 316 KSAGKLQVKHLQLRGLFGVTKDHYDELIDLLNIDNKVKQTIQKPR--------FYHR--- 375

Query: 201 RPKLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKIKREEKLPVECRGCSHCIPRCEEC 260
               +S +    +D+++CPKC     VYDC  E CK K+  K   ECR CS CI RC  C
Sbjct: 376 GEACVSCDDDRALDIEMCPKCQNFKLVYDCPAEDCKGKK--KGSEECRACSLCIQRCYHC 435

Query: 261 GGCVNKYDELEEVVCAGILCSSCWLQLPK 289
           G C+    E EE+ C  +LC+ C    PK
Sbjct: 436 GRCIID-TEYEEMFCLELLCAVCSKPTPK 450

[Close]

BLAST of Sed0015068 vs. TAIR 10
Match: AT3G27290.1 (RNI-like superfamily protein )

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-25
Identity = 87/262 (33.21%), Postives = 133/262 (50.76%), Query Frame = 0


Query: 26  HEALFLVLSHLPLFELLSMSAVCVSLRDAVEHDVLLWLHI-VVDRPLNSRLSDRILRRIS 85
           H+A  LVL +L L E+L++  VC SLRD+V  +   W  I + D  L  R++D  L +++
Sbjct: 128 HDAFELVLPYLELKEILAVEVVCRSLRDSVGKEPFFWTSIDLNDSFLQYRVTDESLLKLT 187

Query: 86  RKADGRLRTMALINCFRISDSGLCDVVEKNPLLTKLYVPGCTSLTPGGVVKAVGTL-SQH 145
           R+A G +R + L  C  I+D GL  V+  NP LTKL V GC  L+  G+V  +  L S +
Sbjct: 188 RRALGGVRCLNLGGCVGITDYGLKQVLASNPHLTKLSVSGCLRLSTAGLVSTLRDLKSSN 247

Query: 146 SHNLKSLMIDGIYKIKKDEHLEVLKGYLLINRSQQ--LQQKQQQQQQQQHILYHEHIDRP 205
              +KSL+  G     K++  E+    LL+    +  LQ+++++        ++   DR 
Sbjct: 248 RLGVKSLITGGALYFTKEQFKEL---NLLLGGDAKVGLQERKKRFYTSCRSEFYLEDDR- 307

Query: 206 KLLSDEYQPIIDVQICPKCYEIGRVYDCSRETCKIKREEKL-PVECRGCSHCIPRCEECG 265
                    + D++ICP C +   V+DC  +TC +K +       CR C  CI RC ECG
Sbjct: 308 ---------VTDLEICPWCEKPSLVFDCPADTCPLKGQYPYSKSSCRACVVCIERCHECG 367

Query: 266 GCVNKYDELEEVVCAGILCSSC 283
            C+N  D   +  C    C  C
Sbjct: 368 SCLN--DCENKPFCFAFSCVVC 374

The following BLAST results are available for this feature:

BLAST of Sed0015068 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906463.1	9.2e-133	77.47	F-box protein SKIP28 [Benincasa hispida]	[more]
KAA0046341.1	1.1e-125	72.73	F-box protein SKIP28 isoform X1 [Cucumis melo var. makuwa] >TYK30504.1 F-box pro...	[more]
KAG6579265.1	1.4e-125	73.77	F-box protein SKIP28, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004150124.1	1.9e-125	72.41	F-box protein SKIP28 [Cucumis sativus]	[more]
XP_022939676.1	7.1e-125	73.46	F-box protein SKIP28 [Cucurbita moschata]	[more]

BLAST of Sed0015068 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZU90	4.0e-54	38.41	F-box protein SKIP28 OS=Arabidopsis thaliana OX=3702 GN=SKIP28 PE=1 SV=1	[more]
Q9LU91	1.9e-35	35.32	F-box protein SKIP14 OS=Arabidopsis thaliana OX=3702 GN=SKIP14 PE=1 SV=1	[more]
Q9LK24	1.5e-24	33.21	F-box protein At3g27290 OS=Arabidopsis thaliana OX=3702 GN=At3g27290 PE=2 SV=1	[more]

BLAST of Sed0015068 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TYB5	5.3e-126	72.73	F-box protein SKIP28 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0KSU6	9.0e-126	72.41	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G566290 PE=4 ...	[more]
A0A6J1FGL5	3.4e-125	73.46	F-box protein SKIP28 OS=Cucurbita moschata OX=3662 GN=LOC111445493 PE=4 SV=1	[more]
A0A6J1IEZ1	1.3e-124	73.15	F-box protein SKIP28 OS=Cucurbita maxima OX=3661 GN=LOC111472110 PE=4 SV=1	[more]
A0A1S4E4Z1	1.2e-117	72.04	F-box protein SKIP28 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504545 PE=4 SV=...	[more]

BLAST of Sed0015068 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01620.1	2.8e-55	38.41	RNI-like superfamily protein	[more]
AT3G26000.1	1.3e-36	35.32	Ribonuclease inhibitor	[more]
AT3G27290.1	1.1e-25	33.21	RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 24..64 e-value: 0.0058 score: 25.8
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 25..67 e-value: 1.6E-5 score: 24.7
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 25..65 score: 8.861604
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 24..209 e-value: 2.5E-10 score: 41.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	coord: 18..319
None	No IPR available	PANTHER	PTHR13382:SF16	F-BOX PROTEIN SKIP28	coord: 18..319
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 90..160
IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	PROSITE	PS00198	4FE4S_FER_1	coord: 246..257
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 25..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015068.1	Sed0015068.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding
molecular_function	GO:0005515	protein binding