Sed0008820 (gene) Chayote v1

Overview


Name	Sed0008820
Type	gene
Organism	Sechium edule (Chayote v1)
Description	mediator of RNA polymerase II transcription subunit 15a
Location	LG10: 35176791 .. 35183416 (-)
RNA-Seq Expression	Sed0008820
Synteny	Sed0008820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCAGCTAAGCAACCTATCAAATTTGCAGCAGCAGCAGTTAGGACCTCAAAGTAATGTTTCTGGACTTCAACAACAACAAATGCATGGAACTCAGTCAGGTAACTCGAACATGCAATCAAATCAGAATTCCGTGCATATGCTGCAACAGAACAAGGTTCAAATGCAACAAACTCCACAAAATACATCAAATTTATCGTCAACGCAAGGTCAGCAAGGACAACTTCAATCATCCCAACAGTTGATGTCCCAGATTCCGCTGCAGTCCACACAAATCCAACAACAGGTACCTTTACAGCAGCAGCAGCAGCCAAATACCATGTCACATGAGGTCCAAAAAAGGCTTCAAGCTGGAGGTCAAGCACCAAGCTCCTTGCTTCAAACACAAAATGTAAAGGATCAAGCCAAAGCAATTGTATCATGCACGAAGCGCCTTTCCAGAGACATCATCAAGTATGTTTTCTTGATCTGTTTTAATCATTAGACCCTTATCAATTACTATTGAACAATCAAACTAGTATGATATTATCAACGATAGCTGAAACCTGGTGACTTTTTTAAAACATGGCATGTGACTGTGAAATGAGAAAGGGAGAGACCAGGAGAGAAAGAACAGTATCATATATTCAATTTTAAAATTTGGACTATGAAGTTTCTTTAAATTTGAATGAAAATAACGAGTCTTTTCCCTTCACAATTTTGTCATTTTAATGATCCTTGATTCTGTTCTATAAATTAAATTGTCCCTTATTTAAACAAAATTTATTTTCGACACTAATACATACCTCAATTTTCTTAAATTCCGTGGCAAAGTCTTTCGGGCAGTATTTTCTGTTGTTGCTCAATTTAGTTTTCCCTTCAAGTTGATAAAAAACTAATAAATTTCTGAAGAATTCAACTTTTCTTTTCAAACCACCAGTTCGTTAACCCTTCATATAACTAGTGTTCAACGTAATTAGATGGCATTGAGATTAGTTGAATAATACAAACTTAAAATACTAACCCTTGGTAACAAACCTAAAGTTAAGGAAGAGGTGATTGACGCTCCATCAAGATGCCCAAAAAAACATCCTGAAGGAGAAAGAGCCCCCTGCTAGGATTTTTTTCTTCTAGAGTAGCAGTTATGGATATTTTAACTGATACACACTAGCACTCATAAGTAAAACATAGCTTTGTTTGGCACTTTACCTTATGTTTCCATGTTTATTTGTTGTTCTTGATAGCGGTTGTGGTGGGTGTTGTTGTGTCTTTTTTTCTTTTATTGTTCTCAATAAAGGTTGAGTTTTTTATTACCAAGGAGCATACTATCTCTATGCTGCAGTTAACTTCTATCCCCTAGGCACATAAATTTAATGCACGCTGATCTTTACTTAATATCTGTAGCATCTTTAGATTCCACGACTCAGACAGACCAAGCCAATGGTGGTGATCGGCAAGAGGAAATTTATCCGAAGGTAGGTACTAAGCTACCATTTCGTCTGTCTAGATTGCAGTTCTCTTAATTCTTTCGAGATTCAAATGTAAGTTAATTCAATTTGCAATGTTTATTTTTTCTTTTCTTAATTGATTCAATTTTTAGTCTTTAAGGAGTGGTGCGATGGTCGAAGGCTTGGGCTTTGAAGATATGCTCCCCTCAAGGTCCCAAGTTTGAGACTAACATGTGGTATTAATTTGTAGATACCTCATGTGTCTTCATTCCTTCTATATCTCCTGGTTCCTAGCTTAGGGACGGGCGTGGTTATCCCAAGTATAGTAGAGTAAAGTTTCAATTTTTTGGTTTCAAAAAAATTGATTCAATTTTCAATATTATTAGAGAGGGGTGGATATGGGAAGGATATTGGGAGAGTTTTGAGTGGGTCTTATTGCAAGAACTTGTCCAATTGTAAACACTCCCATAGACTGGTAAGAGGATGAATGAGTGGGGTTAATGGGGAAAATCTTTTACCAGAAAGAAAAGTCGGTCCATCATAATTGATCAACATACCTTTAGCAGGAGTATGATATCCATGGGAGGATTGAGATAGGCTACTGATTGAGTTATGGTAGTGCATTGTAGTCCTGTTGTTGGAGATTCTTTAAAGAGCCAAATACCCTTTGGACTAGAGTTACCTCAAGTATCCATGGTATGAATTCCATCAGCTGGATGCTTAAGAAGAAACCTACTGCAAGTTTGAGAAGCCCTTGGGTGAATATATGGGTGAATATAACAAGGGTTTGGGATCCTTTTCAGTCATTGACAAAAATAAAAATTGGAAATGGGAATAGAAGTCTTTTCTGGAATGACCTTTAGATTGGCATCTTTCTTTTAAAAGGTCTTATTTCATGGCTTGTTTTATTATCTACCTCTTCATGGAATTTTGATTTTAGAAGGTTGTTGAAAGATGAAGAAGCATCAGATTTTGAAAGTCGGGTATCTTTGTAAACAATTTCGCACTCCCCAGATTACCTTTTTTGGGATTTTTAAGCCTCTGGCTCTTTTTCAGTCAAATCAACACATGCTTTTCTTGGCTCTAATGCCCCCATGGACAAAATTCTTTTCAAAGCCATTTGGAAATCCAAATCAGGCAAGAAGGTTAATGTATTTATTTGGGTGTTATTAAATGGTAGCTTGAACACTACTGATATTCTGCAAGGGAAGATCCACAAACACTTTCTGCAGCCTTCTGTTTGTCAGCTCTGTTTCTCTGCCTCTGAAGAAAGCACCAACATATTATTTTCTTGCCAATTTACTGCTCTTTGTTGGAACAAGCTGCTGAATTTGTTGTCTCTCTCGGGTTTTCTCAAATAAAGTTGGAGAAAGTATATTGCAGCTATTCTTGGACCCTTCTTTGGATCATTTCCATCAAAAGCCTCTTATATGAGTTTTGGTGGGAAAGGAACCAAGGAATTTTTTCAGGATTCTTCATCCCTTTGGCATGAAAGAAGCGACTTGGCTCGAATGAAGGTCTCTTTATGGGAAAGCTCATCGAAGGCTTTCAATGGATACTCAATCCATCAGATTTTTCAAATTGGGAGGCCTTTTCCTAGTCTTCTTTCTCTATTTTTGCTTTATGGAATCCTTGTTTTTGTTGTCTTGGAACCTTGTTTGGTTTTTGGTTTTCTTTATTTATTTGTATTGTTTTTCTCTTTGTAATTCCTCTTCATTTTATCGATGAAATTGTCTCTCGTTTAAAAAAAACCGAAACAACAGTTGCTCCAATATTAACAATTGATGCAGCCACTGAAACAACAGTTGCTCCAATCACAACAGCAACAATGGAAACAACAGTTGCATGAGACACAGAATCTTCTGTTGAAGCAGCAGTTGATGCAGCAGCAACAACCACAATCAGGTGTTAGTATGATTGATATGATAACAGGTTCAGCCTCTGATAACGGGTCGGGAGCTGCAGTTTCGGGGGATTTGGATGCTAGGACAGAAAGTCGGCTGCTAGCAAGAAATTTTGTTTCACACGATGGACCAAATGGAACCAAAAAGATGAGACGCAATACGAGTTCAATGCCCCTAAATTTTGTATCATCAGCTGGAAGTGTAGATGATGTTTGTAAACCATTGACTGGTGCAGAGACATCTGATCTCGAGTCACCCGCAACATCTACTGTCAAGAGGACCAGGGTTGAGGTAATAGAAAATTTTACCTATTTTATGTTATATGAGGGTGAAATAAAAATATAGTAGTTTAGATAGATATTATTAAGAGACCTAGAACTGATAAGCAACTCAACTTAAGTAATATCATATGCCCTTGTGTTGTTCTTATATTTAGGCTCTGGATTGGAGGTCCCAATTGCAACCGGAATCACGACAACAAATTATCAACAAGATGTATGATCTCTTATCTTTTTCTTGTTCTTATTTCATAAATGTGTTTGAGCTTTTATAAGTTCTTGTTTGAGATTTGCTTTTGTGAATCACATATTCGTGCAATCCATGAACAATCAACACAAAATCTATATAATAGTCTACACAAATTTATTTATTTTTAAATAGAAAATAAAGCTTTTTATTGAGAAAAGAATACAAGGTCCAAAAAGAAACATAACCTAATGAAGGCAGATGCATCACCTAGAGGTCTTTCCACCTTTCTAAACAATTCTACTATTTCTTTCACCTTAAATAATCCACAAAATAGCACAAAATCCCACTTTCCTCAAAAACTCCTTAGCACTAAAGGTTGAAAAAATAAGAAACTCTCTAATCATATGTTTGCAATCTATTGGCCTTACCAGCTTAAAATTAATATCTCAGAAGAACACACTCCACACCTTAGAAGCCTACTCGCAACGCTAGAGAAAATGGTACGAATCTTTCGCTGCCCTCTGGCATAATATGCAACAAAACGAACCCACAAAGGAGGATGCCTTCCTAAACCTTAATGGCTTAATCTTACCTTGAATAACATGTCGAAGTAAAAATCTTTACATTTTTTTATAGCTAGGAATTGAAGCTTAGCCTCATACAACCCATAGGCTCTCGTTCCCACCCTAAAGCTTGGACCTAGAAGGTAACTAGAGATTTTACAATTAAACTCATTCGTGAGTTTTGAACCTAAGACCTCTAAATGAGTATACTTTAGAGACTCCAAACATCTAACAACGAGGCTGTTCTTTGGAGACTTCTTTGGAATTTAAACCTTCCACAAAGAAGAAAACCAGATGACAAAGAATTAACTAGAGAAAATAGCCCTTGAACGACAAGATAAAACTGAACACAAGGGATTTTCCCTCTCTCAAATATCCTCCCAAAAAAACCTCTCTTCTAAGAGGAAAACTCTTAACCACCTATTTCACCAATAATACTATGTTCATCAATGAGTTTTATTACTTTTGAACTAAAGGTTAAATTACAAATTCAATACCTATGATTGGGAGAAAGTTAGAATTTAGTCGGTACGGTTTTAAGCCTTAGAATCTTCCAACTATGTGTGAAGTTTTATCAAACTTACATGAAGAGACTAAATTCTTATTTTCTCCCAACCACATAAATCGAATTTGCAATTTCTCTGAGACTAAACATGGGTAATCTTTTCTATTTGATGGAAAATACAAGGCTCAACTTAGCGACTATATAATCATATGAATGTATAAATGTTTATCCTAGGGTTTCACGTAATCGCCATAGGTTCATAATCAAGATTACTCAATCAATGTCTAGTCGATCTGTGCGTAAGCTAACCCAGACAGTCACGAATATCAAAAAGATTACTCAATCAATATCTTTTAGATAAGAAACAATTTCAGTACTAATATGGAATTACTCAATCAATATCTCCTTAAATAGTCTAAAAATAATTATACTTGAACTGCATATGATATCATTATTAAATTAATTCCAACATTTTTGTGTTAGAATGGAGATTTTGGAGAAGCACCTTCCTGTTGTAGGCCATGAAGGATTGATTGAGCTGAGGAAAATGGTTGAAACGTTTGAGAATGAGATTTATATGGCTGCTATCAATCAGGTATTTATTTCCTAATAATAACAATTTAGATTCCACTTTGATTTGGTGCCTAAAATTTAGTTGAAAATGAAAGCATACTACTGCTGTAACATTTTATTATTTAATAATAGTATTTTAATTTGTGTTTTATTCTATTAGTTTTTAAGAGATTAGTTTAAAGTTTTTTATCCTTCAAACGAGGTAGAAGCTAAGAATTCAATTACTTAATTTTGTATTATATTTAATTTTTAGATTTAAAATTCTTAGATGTCCACAACGTACAACTATTTTTATTGGTTTTAATCATTTTGTCTTATAACTTTCAAATGTCCTGTTTTAATCCATAGACTTTGAAGTTAGTTCCATTTGATCTCTAGACTTTTTAAAGTTAATATTAATTTAAATTGATTTAATAGTATTAGTAATTTTAATCCAAGGAAAGTCAAATGTGAACATATTTCTAAAATTTATAGAGAAACATAATATTCTTTTATTCTTTTAAAGAGAAATTAACAAAAACAATTCTATAAGGACCAACTTTTAAGTGTTTTTTGGATTAAAATTTGATATTTAAAAGTTCATGAACAAAAAAATGGAACAAAGTTCAAATGGACCAAAATGATATTTTAACAATTTTATTTTATTTTGGGGATTTTGCATGTATAATAAAAAAGGATTGAGTTATATCACAAAATCAAAACTAATTCATTTGTAGGATTGAGTTATATCACTTATAAAATTCAATGATCGATAGAGTTCAATCACTAGTTGAGTCTATCAGTGATAGAATTCAATTAGTGATAAACTCATTCTATCACTAGTTGAGTCTATCACTAATAGAATTCAATTAGTGATAAACTCATTCTATCACCGGTTGAGTTCTATCACTAATAGAAATCATGTGTTATCGATTAATTATTTTAAAAATTGTAGTGCAAATATAATACAAGAAGTAGAATGTGGGGAGAGTAAATTCCCTTTTATTTTTTATGTGCTCTCTTCTTTGCACTTATAAGAGAATATATAAGAGAATTATAGTTTTTCTTTGTTTTGTTGAGCTTTGATCACAGTCAAATGAGGTCATAGTCTCCCAAAATCTTGTAATATTACTAACACAACATTACTTTTTTTCTCCAATTCAATGTTTTCTCAGATTTTACAGTCTCTGGAGATTGAAGATTGA

mRNA sequence

ATGGCTCAGCTAAGCAACCTATCAAATTTGCAGCAGCAGCAGTTAGGACCTCAAAGTAATGTTTCTGGACTTCAACAACAACAAATGCATGGAACTCAGTCAGGTAACTCGAACATGCAATCAAATCAGAATTCCGTGCATATGCTGCAACAGAACAAGGTTCAAATGCAACAAACTCCACAAAATACATCAAATTTATCGTCAACGCAAGGTCAGCAAGGACAACTTCAATCATCCCAACAGTTGATGTCCCAGATTCCGCTGCAGTCCACACAAATCCAACAACAGGTACCTTTACAGCAGCAGCAGCAGCCAAATACCATGTCACATGAGGTCCAAAAAAGGCTTCAAGCTGGAGGTCAAGCACCAAGCTCCTTGCTTCAAACACAAAATGTAAAGGATCAAGCCAAAGCAATTGTATCATGCACGAAGCGCCTTTCCAGAGACATCATCAAGCACATAAATTTAATGCACGCTGATCTTTACTTAATATCTGTAGCATCTTTAGATTCCACGACTCAGACAGACCAAGCCAATGGTGGTGATCGGCAAGAGGAAATTTATCCGAAGCAACAATGGAAACAACAGTTGCATGAGACACAGAATCTTCTGTTGAAGCAGCAGTTGATGCAGCAGCAACAACCACAATCAGGTGTTAGTATGATTGATATGATAACAGGTTCAGCCTCTGATAACGGGTCGGGAGCTGCAGTTTCGGGGGATTTGGATGCTAGGACAGAAAGTCGGCTGCTAGCAAGAAATTTTGTTTCACACGATGGACCAAATGGAACCAAAAAGATGAGACGCAATACGAGTTCAATGCCCCTAAATTTTGTATCATCAGCTGGAAGTGTAGATGATGTTTGTAAACCATTGACTGGTGCAGAGACATCTGATCTCGAGTCACCCGCAACATCTACTGTCAAGAGGACCAGGGTTGAGGCTCTGGATTGGAGGTCCCAATTGCAACCGGAATCACGACAACAAATTATCAACAAGATAATGGAGATTTTGGAGAAGCACCTTCCTGTTGTAGGCCATGAAGGATTGATTGAGCTGAGGAAAATGGTTGAAACGTTTGAGAATGAGATTTATATGGCTGCTATCAATCAGATTTTACAGTCTCTGGAGATTGAAGATTGA

Coding sequence (CDS)

ATGGCTCAGCTAAGCAACCTATCAAATTTGCAGCAGCAGCAGTTAGGACCTCAAAGTAATGTTTCTGGACTTCAACAACAACAAATGCATGGAACTCAGTCAGGTAACTCGAACATGCAATCAAATCAGAATTCCGTGCATATGCTGCAACAGAACAAGGTTCAAATGCAACAAACTCCACAAAATACATCAAATTTATCGTCAACGCAAGGTCAGCAAGGACAACTTCAATCATCCCAACAGTTGATGTCCCAGATTCCGCTGCAGTCCACACAAATCCAACAACAGGTACCTTTACAGCAGCAGCAGCAGCCAAATACCATGTCACATGAGGTCCAAAAAAGGCTTCAAGCTGGAGGTCAAGCACCAAGCTCCTTGCTTCAAACACAAAATGTAAAGGATCAAGCCAAAGCAATTGTATCATGCACGAAGCGCCTTTCCAGAGACATCATCAAGCACATAAATTTAATGCACGCTGATCTTTACTTAATATCTGTAGCATCTTTAGATTCCACGACTCAGACAGACCAAGCCAATGGTGGTGATCGGCAAGAGGAAATTTATCCGAAGCAACAATGGAAACAACAGTTGCATGAGACACAGAATCTTCTGTTGAAGCAGCAGTTGATGCAGCAGCAACAACCACAATCAGGTGTTAGTATGATTGATATGATAACAGGTTCAGCCTCTGATAACGGGTCGGGAGCTGCAGTTTCGGGGGATTTGGATGCTAGGACAGAAAGTCGGCTGCTAGCAAGAAATTTTGTTTCACACGATGGACCAAATGGAACCAAAAAGATGAGACGCAATACGAGTTCAATGCCCCTAAATTTTGTATCATCAGCTGGAAGTGTAGATGATGTTTGTAAACCATTGACTGGTGCAGAGACATCTGATCTCGAGTCACCCGCAACATCTACTGTCAAGAGGACCAGGGTTGAGGCTCTGGATTGGAGGTCCCAATTGCAACCGGAATCACGACAACAAATTATCAACAAGATAATGGAGATTTTGGAGAAGCACCTTCCTGTTGTAGGCCATGAAGGATTGATTGAGCTGAGGAAAATGGTTGAAACGTTTGAGAATGAGATTTATATGGCTGCTATCAATCAGATTTTACAGTCTCTGGAGATTGAAGATTGA

Protein sequence

MAQLSNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSNQNSVHMLQQNKVQMQQTPQNTSNLSSTQGQQGQLQSSQQLMSQIPLQSTQIQQQVPLQQQQQPNTMSHEVQKRLQAGGQAPSSLLQTQNVKDQAKAIVSCTKRLSRDIIKHINLMHADLYLISVASLDSTTQTDQANGGDRQEEIYPKQQWKQQLHETQNLLLKQQLMQQQQPQSGVSMIDMITGSASDNGSGAAVSGDLDARTESRLLARNFVSHDGPNGTKKMRRNTSSMPLNFVSSAGSVDDVCKPLTGAETSDLESPATSTVKRTRVEALDWRSQLQPESRQQIINKIMEILEKHLPVVGHEGLIELRKMVETFENEIYMAAINQILQSLEIED

Homology

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BLAST of Sed0008820 vs. NCBI nr
Match: XP_038887614.1 (mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida])

HSP 1 Score: 215.3 bits (547), Expect = 9.0e-52
Identity = 143/202 (70.79%), Postives = 154/202 (76.24%), Query Frame = 0


Query: 1   MAQLSNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSNQNSVHMLQQNKVQMQQTP 60
           MAQ SNLSNLQQQQLGPQSNVSGL QQQMHGTQSGNSNMQSNQ+S+HMLQQNKVQMQQ P
Sbjct: 415 MAQQSNLSNLQQQQLGPQSNVSGL-QQQMHGTQSGNSNMQSNQHSMHMLQQNKVQMQQQP 474

Query: 61  -QNTSNLSSTQGQQGQLQSSQQLMSQIPLQSTQIQQQVPLQQQQQ---PNTMSHEVQKRL 120
            QNTSNL STQGQQGQLQSSQQLMSQIPLQSTQ+ QQVPLQQQQQ   PN MSHE+Q+RL
Sbjct: 475 AQNTSNLLSTQGQQGQLQSSQQLMSQIPLQSTQVPQQVPLQQQQQPPPPNAMSHELQQRL 534

Query: 121 QAGGQAPSSLLQTQNVKDQAKAIVSCTKRLSRDIIKHINLMHADLYLISVASLDSTTQTD 180
           Q GGQAP SLLQ+QNV DQ K +    + L                  S  SLDST QT 
Sbjct: 535 QVGGQAPGSLLQSQNVMDQQKQLFHSQRALPE---------------TSSTSLDSTAQTG 594

Query: 181 QANGGDRQEEIYPKQQWKQQLH 199
           QANGGD QEEIY K +  + L+
Sbjct: 595 QANGGDWQEEIYQKIKAMKDLY 600

[Close]

BLAST of Sed0008820 vs. NCBI nr
Match: XP_038887614.1 (mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida])

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-16
Identity = 120/342 (35.09%), Postives = 167/342 (48.83%), Query Frame = 0


Query: 11   QQQQLGPQSNVSGLQQQQMHGTQSGN-SNMQSNQNSVHMLQQNK----------VQMQQT 70
            Q  QL  Q  +S L+ +Q    + G   ++ + Q S +  QQ K          +    +
Sbjct: 899  QMSQLN-QMEISELKMRQGLAVKPGMFQHVPTTQRSAYTHQQMKPGTSFPISPPIFQAAS 958

Query: 71   PQNTSNLSSTQGQQGQLQSSQQLMSQIPLQSTQIQQQVPL-QQQQQPNTMSHEVQKRLQA 130
            PQ T N S    QQ  L S  +  +  PLQS      VP       P+ M  E +K    
Sbjct: 959  PQVTQNSSPQVDQQSLLSSITK--TGTPLQSASSPFVVPSPSTPMAPSPMPGESEK---- 1018

Query: 131  GGQAPSSLLQTQNVKDQAKAIVSCTKRLSRDIIKHINLMHADLYLISVASLDSTTQTDQA 190
                P+S + T      A    S +   ++ +      + A   L   +  +        
Sbjct: 1019 ----PTSGVSTHTNVGNAGQQTSVSATQAQSLAIGTPGISASPLLAEFSGTEGACANALP 1078

Query: 191  NGGDRQEEIYPKQQWKQQLHETQNLLLKQQLMQQQQPQSGVSMIDMITGSASDNGSGAAV 250
                +    + +Q  ++ +   +++  K  +       S VSMID I GSA  NGS AAV
Sbjct: 1079 TVSGKSS--FTEQPLERLIKAVKSMSPKALISSVNGIGSVVSMIDRIAGSAPGNGSRAAV 1138

Query: 251  SGDLDARTESRLLARNFVSHDGPNGTKKMRRNTSSMPLNFVSSAGSVDDVCKPLTGAETS 310
              DL A T+ RL ARNFV HDGPNGTKKMRR+TS+MPLN VSSAGS++DV KPLTGAETS
Sbjct: 1139 GEDLVAMTKCRLQARNFVPHDGPNGTKKMRRHTSAMPLNVVSSAGSINDVFKPLTGAETS 1198

Query: 311  DLESPATSTVKRTRVEALDWRSQLQPESRQQIINKIMEILEK 341
            DLES ATS+ KR RVEA     +   E  Q++I+ ++ I ++
Sbjct: 1199 DLESTATSSAKRPRVEANHVLLEEIREINQRLIDTVVVISDE 1227

HSP 2 Score: 208.4 bits (529), Expect = 1.1e-49
Identity = 143/228 (62.72%), Postives = 165/228 (72.37%), Query Frame = 0


Query: 1   MAQLSNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSNQNSVHMLQQNKVQM-QQT 60
           MAQ +NLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQS+Q+ +HMLQQNKV M QQ 
Sbjct: 330 MAQQNNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSDQHPMHMLQQNKVHMQQQP 389

Query: 61  PQNTSNLSSTQGQQGQLQSSQQLMSQIPLQSTQIQQQVPL--QQQQQPNTMSHEVQKRLQ 120
           PQN SNL S QG QGQLQSSQQLMSQIPLQSTQ+QQQVPL  QQQQQPN MSH++Q+RLQ
Sbjct: 390 PQNASNLLSAQGPQGQLQSSQQLMSQIPLQSTQVQQQVPLHQQQQQQPNAMSHDLQQRLQ 449

Query: 121 AGGQAPSSLLQTQNVKDQAKAIVSCTKRLSRDIIKHINLMHADLYLISVASLDSTTQTDQ 180
            GGQAPSSLLQ+QNV DQ K +    + L                  S  SLDST QT Q
Sbjct: 450 VGGQAPSSLLQSQNVMDQQKQLYHSQRALPE---------------TSSTSLDSTAQTGQ 509

Query: 181 ANGGDRQEEIYPKQQWKQQLHETQNLLLKQQLMQQ--------QQPQS 218
           ANGGD QEEIY K +  ++L+  +   + Q+++ +        QQP+S
Sbjct: 510 ANGGDWQEEIYQKIKAMKELYFFELKEMYQKILPKVNQLESLPQQPKS 542

[Close]

BLAST of Sed0008820 vs. NCBI nr
Match: XP_022963530.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-26
Identity = 77/124 (62.10%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 217  SGVSMIDMITGSASDNGSGAAVSGDLDARTESRLLARNFVSHDGPNGTKKMRRNTSSMPL 276
            S VSMID + GSA  NGS AAV  DL A T+ RL ARNFVSHDG NGTKKMRR TS+MPL
Sbjct: 1007 SVVSMIDRVAGSAPGNGSRAAVGEDLVAMTKCRLQARNFVSHDGSNGTKKMRRYTSAMPL 1066

Query: 277  NFVSSAGSVDDVCKPLTGAETSDLESPATSTVKRTRVEALDWRSQLQPESRQQIINKIME 336
            N VSSAGS++DV KP TGAETSDLES ATS  KR+RVEA     +   E  Q++I+ ++ 
Sbjct: 1067 NVVSSAGSINDVFKPFTGAETSDLESTATSRAKRSRVEANHVLLEEIREINQRLIDTVVV 1126

Query: 337  ILEK 341
            I ++
Sbjct: 1127 ISDE 1130

HSP 2 Score: 208.4 bits (529), Expect = 1.1e-49
Identity = 143/228 (62.72%), Postives = 165/228 (72.37%), Query Frame = 0


Query: 1   MAQLSNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSNQNSVHMLQQNKVQM-QQT 60
           MAQ +NLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQS+Q+ +HMLQQNKV M QQ 
Sbjct: 409 MAQQNNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSDQHPMHMLQQNKVHMQQQP 468

Query: 61  PQNTSNLSSTQGQQGQLQSSQQLMSQIPLQSTQIQQQVPL--QQQQQPNTMSHEVQKRLQ 120
           PQN SNL S QG QGQLQSSQQLMSQIPLQSTQ+QQQVPL  QQQQQPN MSH++Q+RLQ
Sbjct: 469 PQNASNLLSAQGPQGQLQSSQQLMSQIPLQSTQVQQQVPLHQQQQQQPNAMSHDLQQRLQ 528

Query: 121 AGGQAPSSLLQTQNVKDQAKAIVSCTKRLSRDIIKHINLMHADLYLISVASLDSTTQTDQ 180
            GGQAPSSLLQ+QNV DQ K +    + L                  S  SLDST QT Q
Sbjct: 529 VGGQAPSSLLQSQNVMDQQKQLYHSQRALPE---------------TSSTSLDSTAQTGQ 588

Query: 181 ANGGDRQEEIYPKQQWKQQLHETQNLLLKQQLMQQ--------QQPQS 218
           ANGGD QEEIY K +  ++L+  +   + Q+++ +        QQP+S
Sbjct: 589 ANGGDWQEEIYQKIKAMKELYFFELKEMYQKILPKVNQLESLPQQPKS 621

[Close]

BLAST of Sed0008820 vs. NCBI nr
Match: KAG6571702.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-26
Identity = 77/124 (62.10%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 217  SGVSMIDMITGSASDNGSGAAVSGDLDARTESRLLARNFVSHDGPNGTKKMRRNTSSMPL 276
            S VSMID + GSA  NGS AAV  DL A T+ RL ARNFVSHDG NGTKKMRR TS+MPL
Sbjct: 1086 SVVSMIDRVAGSAPGNGSRAAVGEDLVAMTKCRLQARNFVSHDGSNGTKKMRRYTSAMPL 1145

Query: 277  NFVSSAGSVDDVCKPLTGAETSDLESPATSTVKRTRVEALDWRSQLQPESRQQIINKIME 336
            N VSSAGS++DV KP TGAETSDLES ATS  KR+RVEA     +   E  Q++I+ ++ 
Sbjct: 1146 NVVSSAGSINDVFKPFTGAETSDLESTATSRAKRSRVEANHVLLEEIREINQRLIDTVVV 1205

Query: 337  ILEK 341
            I ++
Sbjct: 1206 ISDE 1209

HSP 2 Score: 208.4 bits (529), Expect = 1.1e-49
Identity = 143/228 (62.72%), Postives = 165/228 (72.37%), Query Frame = 0


Query: 1   MAQLSNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSNQNSVHMLQQNKVQM-QQT 60
           MAQ +NLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQS+Q+ +HMLQQNKV M QQ 
Sbjct: 414 MAQQNNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSDQHPMHMLQQNKVHMQQQP 473

Query: 61  PQNTSNLSSTQGQQGQLQSSQQLMSQIPLQSTQIQQQVPL--QQQQQPNTMSHEVQKRLQ 120
           PQN SNL S QG QGQLQSSQQLMSQIPLQSTQ+QQQVPL  QQQQQPN MSH++Q+RLQ
Sbjct: 474 PQNASNLLSAQGPQGQLQSSQQLMSQIPLQSTQVQQQVPLHQQQQQQPNAMSHDLQQRLQ 533

Query: 121 AGGQAPSSLLQTQNVKDQAKAIVSCTKRLSRDIIKHINLMHADLYLISVASLDSTTQTDQ 180
            GGQAPSSLLQ+QNV DQ K +    + L                  S  SLDST QT Q
Sbjct: 534 VGGQAPSSLLQSQNVMDQQKQLYHSQRALPE---------------TSSTSLDSTAQTGQ 593

Query: 181 ANGGDRQEEIYPKQQWKQQLHETQNLLLKQQLMQQ--------QQPQS 218
           ANGGD QEEIY K +  ++L+  +   + Q+++ +        QQP+S
Sbjct: 594 ANGGDWQEEIYQKIKAMKELYFFELKEMYQKILPKVNQLESLPQQPKS 626

[Close]

BLAST of Sed0008820 vs. NCBI nr
Match: XP_022963528.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-26
Identity = 77/124 (62.10%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 217  SGVSMIDMITGSASDNGSGAAVSGDLDARTESRLLARNFVSHDGPNGTKKMRRNTSSMPL 276
            S VSMID + GSA  NGS AAV  DL A T+ RL ARNFVSHDG NGTKKMRR TS+MPL
Sbjct: 1091 SVVSMIDRVAGSAPGNGSRAAVGEDLVAMTKCRLQARNFVSHDGSNGTKKMRRYTSAMPL 1150

Query: 277  NFVSSAGSVDDVCKPLTGAETSDLESPATSTVKRTRVEALDWRSQLQPESRQQIINKIME 336
            N VSSAGS++DV KP TGAETSDLES ATS  KR+RVEA     +   E  Q++I+ ++ 
Sbjct: 1151 NVVSSAGSINDVFKPFTGAETSDLESTATSRAKRSRVEANHVLLEEIREINQRLIDTVVV 1210

Query: 337  ILEK 341
            I ++
Sbjct: 1211 ISDE 1214

HSP 2 Score: 208.4 bits (529), Expect = 1.1e-49
Identity = 143/228 (62.72%), Postives = 165/228 (72.37%), Query Frame = 0


Query: 1   MAQLSNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSNQNSVHMLQQNKVQM-QQT 60
           MAQ +NLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQS+Q+ +HMLQQNKV M QQ 
Sbjct: 415 MAQQNNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSDQHPMHMLQQNKVHMQQQP 474

Query: 61  PQNTSNLSSTQGQQGQLQSSQQLMSQIPLQSTQIQQQVPL--QQQQQPNTMSHEVQKRLQ 120
           PQN SNL S QG QGQLQSSQQLMSQIPLQSTQ+QQQVPL  QQQQQPN MSH++Q+RLQ
Sbjct: 475 PQNASNLLSAQGPQGQLQSSQQLMSQIPLQSTQVQQQVPLHQQQQQQPNAMSHDLQQRLQ 534

Query: 121 AGGQAPSSLLQTQNVKDQAKAIVSCTKRLSRDIIKHINLMHADLYLISVASLDSTTQTDQ 180
            GGQAPSSLLQ+QNV DQ K +    + L                  S  SLDST QT Q
Sbjct: 535 VGGQAPSSLLQSQNVMDQQKQLYHSQRALPE---------------TSSTSLDSTAQTGQ 594

Query: 181 ANGGDRQEEIYPKQQWKQQLHETQNLLLKQQLMQQ--------QQPQS 218
           ANGGD QEEIY K +  ++L+  +   + Q+++ +        QQP+S
Sbjct: 595 ANGGDWQEEIYQKIKAMKELYFFELKEMYQKILPKVNQLESLPQQPKS 627

[Close]

BLAST of Sed0008820 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.5e-20
Identity = 96/224 (42.86%), Postives = 127/224 (56.70%), Query Frame = 0


Query: 1   MAQLSNLSNLQQQQLGPQSNVSGLQ--QQQMHGTQSGNSNMQSNQNSVHMLQQNKVQMQQ 60
           M+Q ++L    Q  LG QSNV+GLQ  QQQM  +Q GNS++Q+NQ+SVHML Q  V +Q+
Sbjct: 429 MSQQNSLQATHQNPLGTQSNVAGLQQPQQQMLNSQVGNSSLQNNQHSVHMLSQPTVGLQR 488

Query: 61  TPQNTSNLSSTQGQQGQLQSSQQLMSQIPLQSTQIQQQVPLQQQQQPNTMSHEVQKRLQA 120
           T Q    L S+QGQQ Q Q SQQ M  +P   +  QQ   L  QQQPN +  +VQ+RLQA
Sbjct: 489 THQAGHGLYSSQGQQSQNQPSQQQM--MPQLQSHHQQ---LGLQQQPNLLQQDVQQRLQA 548

Query: 121 GGQAPSSLLQTQNVKDQAKAIVSCTKRLSRDIIKHINLMHADLYLISVASLDSTTQTDQA 180
            GQ   SLL  QNV DQ + +    + L                 +  +SLDST QT+ A
Sbjct: 549 SGQVTGSLLPPQNVVDQQRQLYQSQRTLPE---------------MPSSSLDSTAQTESA 608

Query: 181 NGGDRQEEIYPK-QQWKQ-------QLHETQNLLLKQQLMQQQQ 215
           NGGD QEE+Y K +  K+       ++++     L+Q  M QQQ
Sbjct: 609 NGGDWQEEVYQKIKSMKETYLPDLNEIYQRVAAKLQQDSMPQQQ 632

[Close]

BLAST of Sed0008820 vs. ExPASy TrEMBL
Match: A0A6J1HVE4 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467027 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.3e-50
Identity = 143/228 (62.72%), Postives = 165/228 (72.37%), Query Frame = 0


Query: 1   MAQLSNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSNQNSVHMLQQNKVQM-QQT 60
           MAQ +NLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQS+Q+ +HMLQQNKV M QQ 
Sbjct: 331 MAQQNNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSDQHPMHMLQQNKVHMQQQP 390

Query: 61  PQNTSNLSSTQGQQGQLQSSQQLMSQIPLQSTQIQQQVPL--QQQQQPNTMSHEVQKRLQ 120
           PQN SNL S QG QGQLQSSQQLMSQIPLQSTQ+QQQVPL  QQQQQPN MSH++Q+RLQ
Sbjct: 391 PQNASNLLSAQGPQGQLQSSQQLMSQIPLQSTQVQQQVPLHQQQQQQPNAMSHDLQQRLQ 450

Query: 121 AGGQAPSSLLQTQNVKDQAKAIVSCTKRLSRDIIKHINLMHADLYLISVASLDSTTQTDQ 180
            GGQAPSSLLQ+QNV DQ K +    + L                  S  SLDST QT Q
Sbjct: 451 VGGQAPSSLLQSQNVMDQQKQLYHSQRALPE---------------TSSTSLDSTAQTGQ 510

Query: 181 ANGGDRQEEIYPKQQWKQQLHETQNLLLKQQLMQQ--------QQPQS 218
           ANGGD QEEIY K +  ++L+  +   + Q+++ +        QQP+S
Sbjct: 511 ANGGDWQEEIYQKIKAMKELYFFELKEMYQKILPKVNQLESLPQQPKS 543

[Close]

BLAST of Sed0008820 vs. ExPASy TrEMBL
Match: A0A6J1HVE4 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467027 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-26
Identity = 77/124 (62.10%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 217  SGVSMIDMITGSASDNGSGAAVSGDLDARTESRLLARNFVSHDGPNGTKKMRRNTSSMPL 276
            S VSMID + GSA  NGS AAV  DL A T+ RL ARNFVSHDG NGTKKMRR TS+MPL
Sbjct: 1007 SVVSMIDRVAGSAPGNGSRAAVGEDLVAMTKCRLQARNFVSHDGSNGTKKMRRYTSAMPL 1066

Query: 277  NFVSSAGSVDDVCKPLTGAETSDLESPATSTVKRTRVEALDWRSQLQPESRQQIINKIME 336
            N VSSAGS++DV KP TGAETSDLES ATS  KR+RVEA     +   E  Q++I+ ++ 
Sbjct: 1067 NVVSSAGSINDVFKPFTGAETSDLESTATSRAKRSRVEANHVLLEEIREINQRLIDTVVV 1126

Query: 337  ILEK 341
            I ++
Sbjct: 1127 ISDE 1130

HSP 2 Score: 208.4 bits (529), Expect = 5.3e-50
Identity = 143/228 (62.72%), Postives = 165/228 (72.37%), Query Frame = 0


Query: 1   MAQLSNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSNQNSVHMLQQNKVQM-QQT 60
           MAQ +NLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQS+Q+ +HMLQQNKV M QQ 
Sbjct: 415 MAQQNNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSDQHPMHMLQQNKVHMQQQP 474

Query: 61  PQNTSNLSSTQGQQGQLQSSQQLMSQIPLQSTQIQQQVPL--QQQQQPNTMSHEVQKRLQ 120
           PQN SNL S QG QGQLQSSQQLMSQIPLQSTQ+QQQVPL  QQQQQPN MSH++Q+RLQ
Sbjct: 475 PQNASNLLSAQGPQGQLQSSQQLMSQIPLQSTQVQQQVPLHQQQQQQPNAMSHDLQQRLQ 534

Query: 121 AGGQAPSSLLQTQNVKDQAKAIVSCTKRLSRDIIKHINLMHADLYLISVASLDSTTQTDQ 180
            GGQAPSSLLQ+QNV DQ K +    + L                  S  SLDST QT Q
Sbjct: 535 VGGQAPSSLLQSQNVMDQQKQLYHSQRALPE---------------TSSTSLDSTAQTGQ 594

Query: 181 ANGGDRQEEIYPKQQWKQQLHETQNLLLKQQLMQQ--------QQPQS 218
           ANGGD QEEIY K +  ++L+  +   + Q+++ +        QQP+S
Sbjct: 595 ANGGDWQEEIYQKIKAMKELYFFELKEMYQKILPKVNQLESLPQQPKS 627

[Close]

BLAST of Sed0008820 vs. ExPASy TrEMBL
Match: A0A6J1HR60 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467027 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-26
Identity = 77/124 (62.10%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 217  SGVSMIDMITGSASDNGSGAAVSGDLDARTESRLLARNFVSHDGPNGTKKMRRNTSSMPL 276
            S VSMID + GSA  NGS AAV  DL A T+ RL ARNFVSHDG NGTKKMRR TS+MPL
Sbjct: 1091 SVVSMIDRVAGSAPGNGSRAAVGEDLVAMTKCRLQARNFVSHDGSNGTKKMRRYTSAMPL 1150

Query: 277  NFVSSAGSVDDVCKPLTGAETSDLESPATSTVKRTRVEALDWRSQLQPESRQQIINKIME 336
            N VSSAGS++DV KP TGAETSDLES ATS  KR+RVEA     +   E  Q++I+ ++ 
Sbjct: 1151 NVVSSAGSINDVFKPFTGAETSDLESTATSRAKRSRVEANHVLLEEIREINQRLIDTVVV 1210

Query: 337  ILEK 341
            I ++
Sbjct: 1211 ISDE 1214

HSP 2 Score: 208.4 bits (529), Expect = 5.3e-50
Identity = 143/228 (62.72%), Postives = 165/228 (72.37%), Query Frame = 0


Query: 1   MAQLSNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSNQNSVHMLQQNKVQM-QQT 60
           MAQ +NLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQS+Q+ +HMLQQNKV M QQ 
Sbjct: 414 MAQQNNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSDQHPMHMLQQNKVHMQQQP 473

Query: 61  PQNTSNLSSTQGQQGQLQSSQQLMSQIPLQSTQIQQQVPL--QQQQQPNTMSHEVQKRLQ 120
           PQN SNL S QG QGQLQSSQQLMSQIPLQSTQ+QQQVPL  QQQQQPN MSH++Q+RLQ
Sbjct: 474 PQNASNLLSAQGPQGQLQSSQQLMSQIPLQSTQVQQQVPLHQQQQQQPNAMSHDLQQRLQ 533

Query: 121 AGGQAPSSLLQTQNVKDQAKAIVSCTKRLSRDIIKHINLMHADLYLISVASLDSTTQTDQ 180
            GGQAPSSLLQ+QNV DQ K +    + L                  S  SLDST QT Q
Sbjct: 534 VGGQAPSSLLQSQNVMDQQKQLYHSQRALPE---------------TSSTSLDSTAQTGQ 593

Query: 181 ANGGDRQEEIYPKQQWKQQLHETQNLLLKQQLMQQ--------QQPQS 218
           ANGGD QEEIY K +  ++L+  +   + Q+++ +        QQP+S
Sbjct: 594 ANGGDWQEEIYQKIKAMKELYFFELKEMYQKILPKVNQLESLPQQPKS 626

[Close]

BLAST of Sed0008820 vs. ExPASy TrEMBL
Match: A0A6J1HI15 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463831 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-26
Identity = 77/124 (62.10%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 217  SGVSMIDMITGSASDNGSGAAVSGDLDARTESRLLARNFVSHDGPNGTKKMRRNTSSMPL 276
            S VSMID + GSA  NGS AAV  DL A T+ RL ARNFVSHDG NGTKKMRR TS+MPL
Sbjct: 1091 SVVSMIDRVAGSAPGNGSRAAVGEDLVAMTKCRLQARNFVSHDGSNGTKKMRRYTSAMPL 1150

Query: 277  NFVSSAGSVDDVCKPLTGAETSDLESPATSTVKRTRVEALDWRSQLQPESRQQIINKIME 336
            N VSSAGS++DV KP TGAETSDLES ATS  KR+RVEA     +   E  Q++I+ ++ 
Sbjct: 1151 NVVSSAGSINDVFKPFTGAETSDLESTATSRAKRSRVEANHVLLEEIREINQRLIDTVVV 1210

Query: 337  ILEK 341
            I ++
Sbjct: 1211 ISDE 1214

HSP 2 Score: 208.4 bits (529), Expect = 5.3e-50
Identity = 143/228 (62.72%), Postives = 165/228 (72.37%), Query Frame = 0


Query: 1   MAQLSNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSNQNSVHMLQQNKVQM-QQT 60
           MAQ +NLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQS+Q+ +HMLQQNKV M QQ 
Sbjct: 330 MAQQNNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSDQHPMHMLQQNKVHMQQQP 389

Query: 61  PQNTSNLSSTQGQQGQLQSSQQLMSQIPLQSTQIQQQVPL--QQQQQPNTMSHEVQKRLQ 120
           PQN SNL S QG QGQLQSSQQLMSQIPLQSTQ+QQQVPL  QQQQQPN MSH++Q+RLQ
Sbjct: 390 PQNASNLLSAQGPQGQLQSSQQLMSQIPLQSTQVQQQVPLHQQQQQQPNAMSHDLQQRLQ 449

Query: 121 AGGQAPSSLLQTQNVKDQAKAIVSCTKRLSRDIIKHINLMHADLYLISVASLDSTTQTDQ 180
            GGQAPSSLLQ+QNV DQ K +    + L                  S  SLDST QT Q
Sbjct: 450 VGGQAPSSLLQSQNVMDQQKQLYHSQRALPE---------------TSSTSLDSTAQTGQ 509

Query: 181 ANGGDRQEEIYPKQQWKQQLHETQNLLLKQQLMQQ--------QQPQS 218
           ANGGD QEEIY K +  ++L+  +   + Q+++ +        QQP+S
Sbjct: 510 ANGGDWQEEIYQKIKAMKELYFFELKEMYQKILPKVNQLESLPQQPKS 542

[Close]

BLAST of Sed0008820 vs. ExPASy TrEMBL
Match: A0A6J1HI99 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463831 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-26
Identity = 77/124 (62.10%), Postives = 91/124 (73.39%), Query Frame = 0


Query: 217  SGVSMIDMITGSASDNGSGAAVSGDLDARTESRLLARNFVSHDGPNGTKKMRRNTSSMPL 276
            S VSMID + GSA  NGS AAV  DL A T+ RL ARNFVSHDG NGTKKMRR TS+MPL
Sbjct: 1007 SVVSMIDRVAGSAPGNGSRAAVGEDLVAMTKCRLQARNFVSHDGSNGTKKMRRYTSAMPL 1066

Query: 277  NFVSSAGSVDDVCKPLTGAETSDLESPATSTVKRTRVEALDWRSQLQPESRQQIINKIME 336
            N VSSAGS++DV KP TGAETSDLES ATS  KR+RVEA     +   E  Q++I+ ++ 
Sbjct: 1067 NVVSSAGSINDVFKPFTGAETSDLESTATSRAKRSRVEANHVLLEEIREINQRLIDTVVV 1126

Query: 337  ILEK 341
            I ++
Sbjct: 1127 ISDE 1130

HSP 2 Score: 204.5 bits (519), Expect = 7.7e-49
Identity = 141/226 (62.39%), Postives = 162/226 (71.68%), Query Frame = 0


Query: 1   MAQLSNLSNLQQQQLGPQSNVSGLQQQQMHGTQSGNSNMQSNQNSVHMLQQNKVQM-QQT 60
           M Q S+LSNLQQ QLGPQSNVSGLQQQQMHGTQSGNSNMQSNQ+ VHM+QQNKVQM QQ 
Sbjct: 413 MNQQSSLSNLQQPQLGPQSNVSGLQQQQMHGTQSGNSNMQSNQHGVHMMQQNKVQMQQQP 472

Query: 61  PQNTSNLSSTQGQQGQLQSSQQLMSQIPLQSTQIQQQVPLQQQQQPNTMSHEVQKRLQAG 120
           PQN SNL STQGQQGQLQSSQQLMSQIPLQS Q+QQQV LQQQ Q NT+SHE+Q+RLQAG
Sbjct: 473 PQNPSNLLSTQGQQGQLQSSQQLMSQIPLQSAQVQQQVSLQQQPQSNTLSHELQQRLQAG 532

Query: 121 GQAPSSLLQTQNVKDQAKAIVSCTKRLSRDIIKHINLMHADLYLISVASLDSTTQTDQAN 180
           GQAP  LLQ+QNV DQ K +    + L                  S  SLDST QT QAN
Sbjct: 533 GQAPGPLLQSQNVMDQQKQLYHPQRVLPE---------------TSSTSLDSTAQTGQAN 592

Query: 181 GGDRQEEIYPKQQWKQQLHETQNLLLKQQLMQQ--------QQPQS 218
           GGD QEEIY K +  ++L+  +   + Q+++ +        QQP+S
Sbjct: 593 GGDWQEEIYQKIKSMKELYLFELKEMYQKILPKVHQFDSLPQQPKS 623

[Close]

BLAST of Sed0008820 vs. TAIR 10
Match: AT1G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). )

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-21
Identity = 96/224 (42.86%), Postives = 127/224 (56.70%), Query Frame = 0


Query: 1   MAQLSNLSNLQQQQLGPQSNVSGLQ--QQQMHGTQSGNSNMQSNQNSVHMLQQNKVQMQQ 60
           M+Q ++L    Q  LG QSNV+GLQ  QQQM  +Q GNS++Q+NQ+SVHML Q  V +Q+
Sbjct: 429 MSQQNSLQATHQNPLGTQSNVAGLQQPQQQMLNSQVGNSSLQNNQHSVHMLSQPTVGLQR 488

Query: 61  TPQNTSNLSSTQGQQGQLQSSQQLMSQIPLQSTQIQQQVPLQQQQQPNTMSHEVQKRLQA 120
           T Q    L S+QGQQ Q Q SQQ M  +P   +  QQ   L  QQQPN +  +VQ+RLQA
Sbjct: 489 THQAGHGLYSSQGQQSQNQPSQQQM--MPQLQSHHQQ---LGLQQQPNLLQQDVQQRLQA 548

Query: 121 GGQAPSSLLQTQNVKDQAKAIVSCTKRLSRDIIKHINLMHADLYLISVASLDSTTQTDQA 180
            GQ   SLL  QNV DQ + +    + L                 +  +SLDST QT+ A
Sbjct: 549 SGQVTGSLLPPQNVVDQQRQLYQSQRTLPE---------------MPSSSLDSTAQTESA 608

Query: 181 NGGDRQEEIYPK-QQWKQ-------QLHETQNLLLKQQLMQQQQ 215
           NGGD QEE+Y K +  K+       ++++     L+Q  M QQQ
Sbjct: 609 NGGDWQEEVYQKIKSMKETYLPDLNEIYQRVAAKLQQDSMPQQQ 632

[Close]

BLAST of Sed0008820 vs. TAIR 10
Match: AT1G15790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-06
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 317 DWRSQLQPESRQQIINKIMEILEKHLPVVGHEGLIELRKMVETFENEIYMAAINQ 372
           DWR+Q    SR +I+NKIME   K LP +  EG  ELRK+   FE +++  A NQ
Sbjct: 6   DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ 60

[Close]

BLAST of Sed0008820 vs. TAIR 10
Match: AT1G15790.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-06
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 317 DWRSQLQPESRQQIINKIMEILEKHLPVVGHEGLIELRKMVETFENEIYMAAINQ 372
           DWR+Q    SR +I+NKIME   K LP +  EG  ELRK+   FE +++  A NQ
Sbjct: 6   DWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQ 60

The following BLAST results are available for this feature:

BLAST of Sed0008820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887614.1	9.0e-52	70.79	mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida]	[more]
XP_038887614.1	1.2e-16	35.09	mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida]	[more]
XP_022963530.1	2.2e-26	62.10	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 [Cucurbi...	[more]
KAG6571702.1	2.2e-26	62.10	Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy...	[more]
XP_022963528.1	2.2e-26	62.10	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi...	[more]

Pages

BLAST of Sed0008820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I171	2.5e-20	42.86	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]

BLAST of Sed0008820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HVE4	5.3e-50	62.72	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucur...	[more]
A0A6J1HVE4	1.1e-26	62.10	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucur...	[more]
A0A6J1HR60	1.1e-26	62.10	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur...	[more]
A0A6J1HI15	1.1e-26	62.10	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur...	[more]
A0A6J1HI99	1.1e-26	62.10	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucur...	[more]

Pages

BLAST of Sed0008820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15780.1	1.8e-21	42.86	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15790.1	2.1e-06	47.27	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15790.2	2.1e-06	47.27	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036546	Mediator complex subunit 15, KIX domain	PFAM	PF16987	KIX_2	coord: 317..371 e-value: 9.5E-17 score: 60.8
IPR036529	Coactivator CBP, KIX domain superfamily	GENE3D	1.10.246.20	Coactivator CBP, KIX domain	coord: 317..373 e-value: 6.4E-9 score: 37.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..83
None	No IPR available	PANTHER	PTHR33137:SF27	OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED	coord: 315..371
None	No IPR available	PANTHER	PTHR33137:SF27	OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED	coord: 217..314 coord: 2..192
IPR044661	Mediator of RNA polymerase II transcription subunit 15a/b/c-like	PANTHER	PTHR33137	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED	coord: 315..371
IPR044661	Mediator of RNA polymerase II transcription subunit 15a/b/c-like	PANTHER	PTHR33137	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED	coord: 217..314 coord: 2..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0008820.1	Sed0008820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003712	transcription coregulator activity