Lsi09G018430 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G018430
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	60S ribosomal protein L38
Location	chr09: 27271286 .. 27276387 (+)
RNA-Seq Expression	Lsi09G018430
Synteny	Lsi09G018430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTAGATGGACCTTCTTGGATTGGGCTTATTTCAATTGACGGCCCGTTGGGTTTTGGACCGAGAAACTCAGCAACCCTCCGCATAAATAAGAAGTTCTAAACCTAGGGTTGTGTCTTCACGCTCGGCCGCCTCAGTTCTCCCACCAAAATGGTACCTCTCAAATTTCCGCTTTTGATTTCTTATGCTTCACTTGTTATCTGCCATGATTTAGCTTCTGTTCTATCTTGTTCAATGCTATGAGGGTGCATATCCTTATTAGATTACAACTCCATATGTTCTATTCACGCTGAAATTTGAGGCGTTCTTGAGTTTTTTTTTTTTTTTTTTTGGTTAAGGTCTATGGATTAAAGTAACTGTTTGATATGTGGATTTTCTTCTTCAAATTCTGTCACTGTTGTGTACATGTCTCCTTCTCGTTTGCATATCTTGTGATTTCTTTGTCTTTTTGTTCCATATTTCAATATACAGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAGATTTGCTTTCTTAAGAACCAGCACTGCAATGTTGAGTATTCCTGATATATTAGAAGTGGCAATAACTGTAGCTAGGTGAAGTGTTTTTAATTGGTTAGATAGATTACAAGTGTTTCATAATTTGTTTGTGACAACTATAAATTTCCAAGGAAGAGGCTAAAACACTCATGTGTGCTTTTATCGTCAGCTTTTGGCTTGAATGATCCTTAAATCTCCTAAAACATGCCTCTTCTTTTGACTAACTTTCCTATAAGTGCAAATAGAGACTCTCCCACAAATCGCCCGCTTGTGATTTCTTTCTCTACAAGTTTGTGTTTGCTTTTTGCTTCCTTATATCGGTCTCTGTACAAAATTTTGTGTATTTCTTTAGCTCTGCCCACATCTCTATCTTCTTAACCATAAGGATGAATTGCTTACGATGAATCCCCTTGTAGATAGGGGCAAAATCCTTCGGCAGGCTTGTGTTTTCGCCTTCTTTGGGGAATTTTACTTGACTCTTGAGGAATTTTAGATTTTTTGGGGGTTGAGGGATCTGGGTAAGTTATTAGCATCTTGGGGCTTCCTTCGTCAAGTTAGGCTTCATTTCTTGGAACTTGTTAGTGTTCGGATTCCTTTTCTTGAACTCACGGTGTATTCTTTCACTATCTATGAAAGCATGGTTTTCTATTAAAATACCCTTTTGGTCTTGTATTTTAGGATTTACATTTTAGTTGTCTTATTTTAGTCCTTGCACTCAATAAATTTTTAAGTTTTCGGCTATTTTAGTTTATGGCCCACTTTTTCAAAAAGTATAATAAGATCGTCTCTACTATCCTTGATCCCATCAATTCTGGGGGAAAATTTTACTTTCACTTTTCTCGAATAGAAATTATTATAATTATTTTATAAGGTTCTATATTAAAAAATAATAACCTCAAACTAACCTAAAATGACTATTTTGTATTATGAAAGAACATGTATTAAAATTTGTCATTGGAGAGTTTTGTGACTAAATTTGAATGAATCCCAAATTACAGAGATGAAAATGGTGTTTTAACTTCAAACAAAATTGGTTCCTATGATGTTTTGCTAAGATGAGGATAAATTTTGTCTGAATATTGATTGACCTTTATTTTTCCACTTTGGCAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAAAGTCTCAAATGATCACAAGAATGAGAACTAGATTTTTTGTATGGTGTTTTCTTTCCCAACTATTTAGAATACATTTAAATTGGATTTGAGCTTGTAGTAATCCATATTTATCTTCGTTTTCCAGTGGATTGGTTGAAATTTTGAATTGTTATGGTGAGTTTATCATGTGAGTTGATGTTTCATTAAATTCACGGCAGTGTTTCTAACCAAAGGTGGATTTGATAAGCACAACCTTTTTCATAAAGGGCAGTAAACAGTTTGTTTTTGAACAATACCATGCTGATCCTTTTTATTTTATTTATTTTTTTTTTTTTTTTTTTTTTTTTGCCATTTCGATTTGTATTCTAATACATGTTTTAATTATCTTAACTATGCTCATCTTGGCTATCAAATCATGGTGAATGTAATGTTTGAAATTCGCCACCAAATTTGACGCCCATGCATTATTTGAACATGATTAGGATTTTTGTGAAATTATTTGTCTTGCATAACTCAGAATTAAGGAAGGTTGAAAACAATTGAAACTCAATTCAACAGCCATTGGATGTCATCATAACAAATGAAGCAATTACAGAAGATTGTCTGATTGTTCCTTTTTTTTTTATCAATTGTAGGATAGATATATTAAAACGTAGAGAATTAAAAATATTTAAGCTTCTACTCTGGAACACCTTGTTCATAAAACTTTCAGCACTAAAAAGCTCTTTTGATACTTCACTCGGGAGAGAGACTACAAAAACACAAGTTGAACTAAGGTGAGGGATTTTAATCTCAAATCATCTAGTTAAGCGTACACATTCTATGTCAATGACTCAAGCAATTTTAGTTGGATTACTTTTTGAAAATTTTCTTATGAAACATGTGAATGAAGATAAAACGTGTTTAACACGGTAGGTAGGTGACTAAATCATAGAGGATACAAGAGAATGTAGGAGTCACTAGTGTTAAATATGGGTCTAGAGCGGTACAACAATACTCTTTCAATCTCAACCCACTATGTTTTTAAGTGGTGTAAGACTATCTGTTGGCATCTAAATAAATATTGTATTGTACCTCTAAATTCTAATATAACACCCACCCAAAGAAGAGAAAGGGGCCTAAAAAAACTCCTTTTGCCTCCTTTGGATTAGGGTAATTTAAAAAAATATATATTAGCAAAGAAATAGGCAAGGTTGGAAACTATTTGTACAAATAAGCCATTTGTCTTGTCTTTATTCAATGGTTTTTATCTTTTTTTTTTTTTTAATGAACATTTTTAATCTCTAAGTTTTGAGAAATAAATTTAAATAGTGTTTTGAGATTAATTTTACCCTCTGATAACCAAATTTTTATTATTTGAGTTTAAAAGGTAATAAATAATAAAATTAACAATAAAAACAAAAACAATTATCATCCAAATGGCTTCTGTGAGCTATTTGCAGTAGAAGGAAAAATGGAGGAAGACCACGAGAGAAAAACTAGAGAAAATGAAGCTTTTTTTTTTTTTTTTTGAGGAAAAGGAAGGAGGTGATGAGAGAGAAGAGTATTTGTCTTTATTATTATATTACCTTTTTAAATTTTCTATGTCCGCATTAAAAAATAAAATAAAATTAGTTACTTACGGTTGTAAACAGTAAAATTAACTCCAACTCCAATGACCATTTAAACATATTTCTCAAAACTTAGGAACCTCTGTGTAGGATATGACCACGGCCACCGTTAAGTTATATCTCCACTATCAACTCAACCACGTACGACCTTGAGCCTATCACTACCACAACCTTGACCATAATTGTATTTTAGGAAAAAAAAACACCTTTTTCTTTAAATTTTGGGAGTTTTCATTTGTACTTTTTAAAATGTTATTTCTTTTTCCATTTAAGGTTTGTTTTAATTTAATTTGTTTCAAAATGTTACAATTTTATCTTCGAGATTTGCATTTTGTTTCAATTTGATTTATGTTTAACATTTGTAATCTTCATTTTTCATAATACTCAATTTTAATTTTTGGTGTTAGTGTCTATTAATTAATTTAAGATAATTATAAATTAAAATTTTTAAATTATTTTTAATAAACATGTAAAACTTAATTAATTACAATTCTTTTAAATTAATATACATTAACACTCCAGATGAAAAGTTAATATTTGGTGAAAAATCAAAATTAAAAGTGTAAAAATTTTAAATTCAAAGACCAAATTGAAACAAAACTCAATTTTCATCGGTAAAATTGTAATATTTTGAAATTCAAATAATCACTAATTATTCAGAAAAAATATTAGAGTTCATGCAGATAAATGGACAAAACATCATCAACCAAATCGAAATATAAAAATTAGTTTGCCATTTTTCATTATTGATTATTTATTTTTTAATTATTATTTTTAATTAAATTTTCGTGTTTCTATTCAATAATCAATAAATAGGTAAATGGGCCTTCTTGGATTGGGCTTATCTCAATTGACGGCCCGTTAGGTTTTGGACCGGAAACTCAGCAAACCTCCACATAAATAAGAACTAAAACCTAGGGTTTTGAATCAGGAACTACGCTCGGCATCCTCCATTCTGTCACCAAAATGGTACCTCTCAAATTATAATTCCTAATTTCATTGCTTTTCTATTGTTCATGTTCTTAATACATTCATGATTCAATCCGCTATTGGTTTCTTATGCTTGCTGTCGACAACTATGATTTAGCTTCGGTTCTATCTTGTTCAATGCAATGTTATGAGGGTGCATATCCTCATTAGGTTATAACTCCATATGTTCTATTCACGCTGAAATTTGAGGCGTTCTTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTATGGATTAAAGTAACTGTTTGATATGTGGATTTTCTTCTTCAAATTCTGTCACTGTTGTGTACATGTCTCCTTCTCGTTTGCATATCTTGTGATTTCTTTGTCTTTTTGTTCCATATTTCAATATACAGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG

mRNA sequence

AGGTAGATGGACCTTCTTGGATTGGGCTTATTTCAATTGACGGCCCGTTGGGTTTTGGACCGAGAAACTCAGCAACCCTCCGCATAAATAAGAAGTTCTAAACCTAGGGTTGTGTCTTCACGCTCGGCCGCCTCAGTTCTCCCACCAAAATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGAAGTGGCAATAACTGTAGCTAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAAAGTCTCAAATGATCACAAGAATGAGAACTAGATTTTTTGTATGTGGATTGGTTGAAATTTTGAATTGTTATGGTGAGTTTATCATGGCAAGGATACAAGAGAATGTAGGAGTCACTAGTGTTAAATATGGGTCTAGAGCGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG

Coding sequence (CDS)

ATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGAAGTGGCAATAACTGTAGCTAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAAAGTCTCAAATGATCACAAGAATGAGAACTAGATTTTTTGTATGTGGATTGGTTGAAATTTTGAATTGTTATGGTGAGTTTATCATGGCAAGGATACAAGAGAATGTAGGAGTCACTAGTGTTAAATATGGGTCTAGAGCGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG

Protein sequence

MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEILNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Homology

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BLAST of Lsi09G018430 vs. ExPASy Swiss-Prot
Match: O22860 (60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.1e-27
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPEVAI 67
          PP +++
Sbjct: 61 PPGLSV 66

[Close]

BLAST of Lsi09G018430 vs. ExPASy Swiss-Prot
Match: P46291 (60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.7e-25
Identity = 56/66 (84.85%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60

Query: 61 PPEVAI 67
          PP +++
Sbjct: 61 PPGLSV 66

[Close]

BLAST of Lsi09G018430 vs. ExPASy Swiss-Prot
Match: Q95V84 (60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-23
Identity = 54/66 (81.82%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSL 60

Query: 61 PPEVAI 67
          PP +A+
Sbjct: 61 PPGLAV 66

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BLAST of Lsi09G018430 vs. ExPASy Swiss-Prot
Match: Q32PB9 (60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4)

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-21
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPEVAI 67
          PP +A+
Sbjct: 61 PPGLAV 66

[Close]

BLAST of Lsi09G018430 vs. ExPASy Swiss-Prot
Match: P63173 (60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-21
Identity = 50/66 (75.76%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSL
Sbjct: 1  MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 61 PPEVAI 67
          PP +A+
Sbjct: 61 PPGLAV 66

[Close]

BLAST of Lsi09G018430 vs. ExPASy TrEMBL
Match: A0A103XQP8 (Ribosomal protein L38e (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_002813 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 4.9e-52
Identity = 125/189 (66.14%), Postives = 129/189 (68.25%), Query Frame = 0


Query: 2   PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 61
           PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLP
Sbjct: 15  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKLKQSLP 74

Query: 62  PEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEILNCYGEFIMARIQENVGVTS 121
           P                                VC L  I      F     Q       
Sbjct: 75  P--------------------------------VCLLSFIYIILDIFCWFYTQ------- 134

Query: 122 VKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAD 181
                  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+
Sbjct: 135 -------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKAN 157

Query: 182 KLKQSLPPG 191
           KLKQSLPPG
Sbjct: 195 KLKQSLPPG 157

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BLAST of Lsi09G018430 vs. ExPASy TrEMBL
Match: A0A0D9X019 (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 8.6e-49
Identity = 112/190 (58.95%), Postives = 125/190 (65.79%), Query Frame = 0


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60

Query: 61  PPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEILNCYGEFIMARIQENVGVT 120
           PP + +                                                      
Sbjct: 61  PPGLTV------------------------------------------------------ 120

Query: 121 SVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA 180
                 + PKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA
Sbjct: 121 ------QEPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKA 130

Query: 181 DKLKQSLPPG 191
           +KLKQSLPPG
Sbjct: 181 NKLKQSLPPG 130

[Close]

BLAST of Lsi09G018430 vs. ExPASy TrEMBL
Match: A0A6A2WU09 (60S ribosomal protein L38 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116971pilonHSYRG00380 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 7.5e-45
Identity = 121/231 (52.38%), Postives = 139/231 (60.17%), Query Frame = 0


Query: 2    PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 61
            PKQIHEIKDFLLTARRKDAR VKIK+S+DVVKFKVRCSKYLYTLC+ D++KADKLKQSLP
Sbjct: 1247 PKQIHEIKDFLLTARRKDARLVKIKKSRDVVKFKVRCSKYLYTLCMSDAKKADKLKQSLP 1306

Query: 62   PEVAITVARF---------ECARSVKE--WLKSQMITRMRTRFFVCGLVEILNCYGEFIM 121
            P   + + R           C R  K+   +K  ++T  R                +   
Sbjct: 1307 PGKLLCINRVASFFVLNEPACYRIPKQIHEIKDFLLTARRK---------------DARS 1366

Query: 122  ARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARR-------------------------- 181
             +I+++  V   K     PKQIHEIKDFLLTARR                          
Sbjct: 1367 VKIKKSRDVVKFK-----PKQIHEIKDFLLTARRKDARSVKIKKSMCHPSAFMVMISELP 1426

Query: 182  -----KDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG 191
                 KDARSVKIK+S+DVVKFKVRCSKYLYTL V D EKADKLKQSLPPG
Sbjct: 1427 SHCQKKDARSVKIKKSRDVVKFKVRCSKYLYTLYVSDVEKADKLKQSLPPG 1457

[Close]

BLAST of Lsi09G018430 vs. ExPASy TrEMBL
Match: A0A4S4DHN9 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_012270 PE=3 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 4.1e-43
Identity = 110/186 (59.14%), Postives = 128/186 (68.82%), Query Frame = 0


Query: 2   PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 61
           PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS+YLYTLCVFDSEKADKLKQSLP
Sbjct: 22  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSRYLYTLCVFDSEKADKLKQSLP 81

Query: 62  PEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEILNCYGEFIMARIQENVGVTS 121
           P      A+  CA +   + +S++  + R                +   +R+ E+    S
Sbjct: 82  PG-----AKTSCATTYGTYGQSKLTFKSRPA-------------SQEPTSRVHESAHGFS 141

Query: 122 VKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAD 181
                  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRC+++         E+A 
Sbjct: 142 PSISQ--PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCARF---------ERAR 178

Query: 182 KLKQSL 188
            +KQ+L
Sbjct: 202 PVKQAL 178

[Close]

BLAST of Lsi09G018430 vs. ExPASy TrEMBL
Match: A0A498I9U8 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_002263 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.2e-37
Identity = 95/166 (57.23%), Postives = 113/166 (68.07%), Query Frame = 0


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           +PKQIHEIKDFLLTARRKDARSVKIK++KD VKFKV CSKYLYTLCVFDS+KADKLKQSL
Sbjct: 11  LPKQIHEIKDFLLTARRKDARSVKIKKTKDAVKFKVHCSKYLYTLCVFDSKKADKLKQSL 70

Query: 61  PPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEILNCYGEFIMARIQENVGVT 120
           PP  A T            W  +Q+ ++  T+  V   + +        + R   ++ V 
Sbjct: 71  PPNFANTT----------HWCHNQLSSKFSTKLNVQTQLNV-------ELVRWLSDLRVG 130

Query: 121 SVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS 167
            + +    PKQ HE+KDFLLTARRKDA SVK KR  DVVKFKVRC+
Sbjct: 131 DLPF---VPKQTHEMKDFLLTARRKDAISVKTKRINDVVKFKVRCN 156

[Close]

BLAST of Lsi09G018430 vs. NCBI nr
Match: KAG6515258.1 (hypothetical protein ZIOFF_025650 [Zingiber officinale])

HSP 1 Score: 231.1 bits (588), Expect = 8.0e-57
Identity = 135/200 (67.50%), Postives = 146/200 (73.00%), Query Frame = 0


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRGKDVVKFKVRCSKYLYTLCVFDSEKANKLKQSL 60

Query: 61  PPEVAITV---------ARFECARSVKEWLKSQMITRMRTRFFVCGLVEILNC-YGEFIM 120
           PP     V           FEC R++K          M+ R  V  L   L+  YG    
Sbjct: 61  PPVYLSGVLDGLLMGYWLLFECPRNMK----------MQLRTLVWPLAHFLSLEYG---- 120

Query: 121 ARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLY 180
            R+  +  +  V + +  PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLY
Sbjct: 121 -RLNSSTVMAFVPFIN--PKQIHEIKDFLLTARRKDARSVKIKRGKDVVKFKVRCSKYLY 180

Query: 181 TLCVFDSEKADKLKQSLPPG 191
           TLCVFDSEKA+KLKQSLPPG
Sbjct: 181 TLCVFDSEKANKLKQSLPPG 183

[Close]

BLAST of Lsi09G018430 vs. NCBI nr
Match: KAG6512538.1 (hypothetical protein ZIOFF_030659 [Zingiber officinale])

HSP 1 Score: 229.2 bits (583), Expect = 3.0e-56
Identity = 134/202 (66.34%), Postives = 143/202 (70.79%), Query Frame = 0


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRGKDVVKFKVRCSKYLYTLCVFDSEKANKLKQSL 60

Query: 61  PPEVAITV---------ARFECARSVKEWLKS---QMITRMRTRFFVCGLVEILNCYGEF 120
           PP     V           FEC R++K  L++    +    R   F   LV  +     F
Sbjct: 61  PPVYLSGVLGALLMGYWLLFECPRNMKMQLRTLVWPLGVNYRVSSFYHVLVTCVPVESSF 120

Query: 121 IMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKY 180
           I     E +           PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKY
Sbjct: 121 IR---HETI-----------PKQIHEIKDFLLTARRKDARSVKIKRGKDVVKFKVRCSKY 180

Query: 181 LYTLCVFDSEKADKLKQSLPPG 191
           LYTLCVFDSEKA+KLKQSLPPG
Sbjct: 181 LYTLCVFDSEKANKLKQSLPPG 188

[Close]

BLAST of Lsi09G018430 vs. NCBI nr
Match: KAE8646721.1 (hypothetical protein Csa_005163 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 1.7e-54
Identity = 126/189 (66.67%), Postives = 133/189 (70.37%), Query Frame = 0


Query: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
           MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60

Query: 61  PPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEILNCYGEFIMARIQENVGVT 120
           PP                                    V +L  + + +           
Sbjct: 61  PP------------------------------------VRVLTLHNQQLRG--------- 120

Query: 121 SVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA 180
           S+   ++ PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA
Sbjct: 121 SLCSATKMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKA 144

Query: 181 DKLKQSLPP 190
           DKLKQSLPP
Sbjct: 181 DKLKQSLPP 144

[Close]

BLAST of Lsi09G018430 vs. NCBI nr
Match: KAF3497693.1 (hypothetical protein DY000_02056630 [Brassica cretica])

HSP 1 Score: 218.4 bits (555), Expect = 5.3e-53
Identity = 125/189 (66.14%), Postives = 131/189 (69.31%), Query Frame = 0


Query: 2   PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 61
           PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLP
Sbjct: 11  PKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLP 70

Query: 62  PEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEILNCYGEFIMARIQENVGVTS 121
           P VA T      AR                   V  L+ +L                   
Sbjct: 71  PVVATTSG---AAR------------------MVLSLLIVL------------------- 130

Query: 122 VKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAD 181
                  PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKAD
Sbjct: 131 ------TPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKAD 153

Query: 182 KLKQSLPPG 191
           KLKQSLPPG
Sbjct: 191 KLKQSLPPG 153

[Close]

BLAST of Lsi09G018430 vs. NCBI nr
Match: KVH95117.1 (Ribosomal protein L38e, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 214.2 bits (544), Expect = 1.0e-51
Identity = 125/189 (66.14%), Postives = 129/189 (68.25%), Query Frame = 0


Query: 2   PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP 61
           PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLP
Sbjct: 15  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKANKLKQSLP 74

Query: 62  PEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEILNCYGEFIMARIQENVGVTS 121
           P                                VC L  I      F     Q       
Sbjct: 75  P--------------------------------VCLLSFIYIILDIFCWFYTQ------- 134

Query: 122 VKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAD 181
                  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+
Sbjct: 135 -------PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDAEKAN 157

Query: 182 KLKQSLPPG 191
           KLKQSLPPG
Sbjct: 195 KLKQSLPPG 157

[Close]

BLAST of Lsi09G018430 vs. TAIR 10
Match: AT2G43460.1 (Ribosomal L38e protein family )

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-28
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPEVAI 67
          PP +++
Sbjct: 61 PPGLSV 66

[Close]

BLAST of Lsi09G018430 vs. TAIR 10
Match: AT3G59540.1 (Ribosomal L38e protein family )

HSP 1 Score: 123.2 bits (308), Expect = 2.2e-28
Identity = 59/66 (89.39%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL 60
          MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSL
Sbjct: 1  MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60

Query: 61 PPEVAI 67
          PP +++
Sbjct: 61 PPGLSV 66

The following BLAST results are available for this feature:

BLAST of Lsi09G018430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22860	3.1e-27	89.39	60S ribosomal protein L38 OS=Arabidopsis thaliana OX=3702 GN=RPL38A PE=3 SV=1	[more]
P46291	3.7e-25	84.85	60S ribosomal protein L38 OS=Solanum lycopersicum OX=4081 GN=RPL38 PE=3 SV=1	[more]
Q95V84	1.2e-23	81.82	60S ribosomal protein L38 OS=Branchiostoma belcheri OX=7741 GN=RPL38 PE=3 SV=1	[more]
Q32PB9	1.9e-21	75.76	60S ribosomal protein L38 OS=Bos taurus OX=9913 GN=RPL38 PE=3 SV=4	[more]
P63173	1.9e-21	75.76	60S ribosomal protein L38 OS=Homo sapiens OX=9606 GN=RPL38 PE=1 SV=2	[more]

BLAST of Lsi09G018430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A103XQP8	4.9e-52	66.14	Ribosomal protein L38e (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 G...	[more]
A0A0D9X019	8.6e-49	58.95	Uncharacterized protein OS=Leersia perrieri OX=77586 PE=3 SV=1	[more]
A0A6A2WU09	7.5e-45	52.38	60S ribosomal protein L38 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116971pil...	[more]
A0A4S4DHN9	4.1e-43	59.14	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0122...	[more]
A0A498I9U8	1.2e-37	57.23	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_002263 PE=3 SV=1	[more]

BLAST of Lsi09G018430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6515258.1	8.0e-57	67.50	hypothetical protein ZIOFF_025650 [Zingiber officinale]	[more]
KAG6512538.1	3.0e-56	66.34	hypothetical protein ZIOFF_030659 [Zingiber officinale]	[more]
KAE8646721.1	1.7e-54	66.67	hypothetical protein Csa_005163 [Cucumis sativus]	[more]
KAF3497693.1	5.3e-53	66.14	hypothetical protein DY000_02056630 [Brassica cretica]	[more]
KVH95117.1	1.0e-51	66.14	Ribosomal protein L38e, partial [Cynara cardunculus var. scolymus]	[more]

BLAST of Lsi09G018430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43460.1	2.2e-28	89.39	Ribosomal L38e protein family	[more]
AT3G59540.1	2.2e-28	89.39	Ribosomal L38e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002675	Ribosomal protein L38e	PFAM	PF01781	Ribosomal_L38e	coord: 129..190 e-value: 5.2E-31 score: 106.5 coord: 2..67 e-value: 1.2E-31 score: 108.6
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 129..190
IPR002675	Ribosomal protein L38e	PANTHER	PTHR10965	60S RIBOSOMAL PROTEIN L38	coord: 1..66
IPR038464	Ribosomal protein L38e superfamily	GENE3D	3.30.720.90		coord: 128..190 e-value: 1.4E-31 score: 110.4 coord: 1..69 e-value: 1.8E-33 score: 116.5
None	No IPR available	PANTHER	PTHR10965:SF14	60S RIBOSOMAL PROTEIN L38	coord: 129..190
None	No IPR available	PANTHER	PTHR10965:SF14	60S RIBOSOMAL PROTEIN L38	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G018430.1	Lsi09G018430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome