Lsi09G017240 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi09G017240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr09: 25830835 .. 25831290 (-)
RNA-Seq Expression	Lsi09G017240
Synteny	Lsi09G017240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGGCCTCGACAAGATCCCCAATCTGGGATTTTTCATGAGATTTCGTCTCTGCTTTTGAAAATTCTACGATCGCCGCCACCTCCTGTCCCTTTTTCCGATCATGTTTTGGAATTATCTTCCGCTATTTCGTCGTCGTCGTCGAGAATTTTGCCTTCCTCTCAGATTACCCCAGCTGGATTTGCGGCTTTGCTTTTGGGGATTTCGTTGGCTTTGATGCTTTGTGGATCGGTTACTTTCTTCCTTGGCTTCATGTTGATGCCTTGGATTCTCGTTTTGGTGATGATTTTTTATGTGGTTGGGATCGTCTCTACCCTCTCTATGTTGGGACGCTCTTTACTTTGTTGTTTCACCGCTCCAACGCCTCGGAAAGATTTTCATGGCGAGTTTCTTATCTCCTTCTGTTTCCTTGTTTTTATTGAAATTGATTTTTTGCTTCATTTCCTTATCTGA

mRNA sequence

ATGAGTAGGCCTCGACAAGATCCCCAATCTGGGATTTTTCATGAGATTTCGTCTCTGCTTTTGAAAATTCTACGATCGCCGCCACCTCCTGTCCCTTTTTCCGATCATGTTTTGGAATTATCTTCCGCTATTTCGTCGTCGTCGTCGAGAATTTTGCCTTCCTCTCAGATTACCCCAGCTGGATTTGCGGCTTTGCTTTTGGGGATTTCGTTGGCTTTGATGCTTTGTGGATCGGTTACTTTCTTCCTTGGCTTCATGTTGATGCCTTGGATTCTCGTTTTGGTGATGATTTTTTATGTGGTTGGGATCGTCTCTACCCTCTCTATGTTGGGACGCTCTTTACTTTGTTGTTTCACCGCTCCAACGCCTCGGAAAGATTTTCATGGCGAGTTTCTTATCTCCTTCTGTTTCCTTGTTTTTATTGAAATTGATTTTTTGCTTCATTTCCTTATCTGA

Coding sequence (CDS)

ATGAGTAGGCCTCGACAAGATCCCCAATCTGGGATTTTTCATGAGATTTCGTCTCTGCTTTTGAAAATTCTACGATCGCCGCCACCTCCTGTCCCTTTTTCCGATCATGTTTTGGAATTATCTTCCGCTATTTCGTCGTCGTCGTCGAGAATTTTGCCTTCCTCTCAGATTACCCCAGCTGGATTTGCGGCTTTGCTTTTGGGGATTTCGTTGGCTTTGATGCTTTGTGGATCGGTTACTTTCTTCCTTGGCTTCATGTTGATGCCTTGGATTCTCGTTTTGGTGATGATTTTTTATGTGGTTGGGATCGTCTCTACCCTCTCTATGTTGGGACGCTCTTTACTTTGTTGTTTCACCGCTCCAACGCCTCGGAAAGATTTTCATGGCGAGTTTCTTATCTCCTTCTGTTTCCTTGTTTTTATTGAAATTGATTTTTTGCTTCATTTCCTTATCTGA

Protein sequence

MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSTLSMLGRSLLCCFTAPTPRKDFHGEFLISFCFLVFIEIDFLLHFLI

Homology

[Close]

BLAST of Lsi09G017240 vs. ExPASy TrEMBL
Match: A0A0A0KDL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095290 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.4e-56
Identity = 119/129 (92.25%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPA 60
           M   RQDP+SG+F+EISSLLLKILRSPPPPVPFSDHVLELSSAI+SSSSRILPSSQ+TPA
Sbjct: 1   MIMARQDPRSGVFYEISSLLLKILRSPPPPVPFSDHVLELSSAITSSSSRILPSSQMTPA 60

Query: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSTLSMLGRSLLCCFTA 120
           GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVS+LSMLGRSL+CCFTA
Sbjct: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSSLSMLGRSLICCFTA 120

Query: 121 PTPRKDFHG 130
           PTPRKDFHG
Sbjct: 121 PTPRKDFHG 129

[Close]

BLAST of Lsi09G017240 vs. ExPASy TrEMBL
Match: A0A1S3CB48 (uncharacterized protein LOC103498845 OS=Cucumis melo OX=3656 GN=LOC103498845 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.4e-56
Identity = 118/129 (91.47%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPA 60
           M+  +QDP+SG+FHEISSLLLKILRSPPPPVPFSDHVLELSS ISSSSSRILPSSQ+TPA
Sbjct: 1   MNMAQQDPRSGVFHEISSLLLKILRSPPPPVPFSDHVLELSSVISSSSSRILPSSQMTPA 60

Query: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSTLSMLGRSLLCCFTA 120
           GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVS+LS+LGRSL+CCFTA
Sbjct: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSSLSVLGRSLICCFTA 120

Query: 121 PTPRKDFHG 130
           PTPRKDFHG
Sbjct: 121 PTPRKDFHG 129

[Close]

BLAST of Lsi09G017240 vs. ExPASy TrEMBL
Match: A0A6J1DMY8 (uncharacterized protein LOC111022584 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022584 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 8.6e-52
Identity = 112/131 (85.50%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 1   MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPA 60
           M RPR+DPQS + HEISSLL+KILRSPPPPVPFSDHVLELSS ISSSS  +LPSSQITPA
Sbjct: 2   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSG-LLPSSQITPA 61

Query: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSTLSMLGRSLLCCFTA 120
           G A+LLLGISLALMLCGSVTFFLGF+LMPWILVLVMIFYVVGIVS+LSMLGRS+LCCF+A
Sbjct: 62  GLASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSA 121

Query: 121 PTPRKDFHGEF 132
           PTPRKDF+ +F
Sbjct: 122 PTPRKDFNAQF 131

[Close]

BLAST of Lsi09G017240 vs. ExPASy TrEMBL
Match: A0A6J1DPD1 (uncharacterized protein LOC111022584 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111022584 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.5e-51
Identity = 112/129 (86.82%), Postives = 122/129 (94.57%), Query Frame = 0


Query: 1   MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPA 60
           M RPR+DPQS + HEISSLL+KILRSPPPPVPFSDHVLELSS ISSSS  +LPSSQITPA
Sbjct: 2   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSG-LLPSSQITPA 61

Query: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSTLSMLGRSLLCCFTA 120
           G A+LLLGISLALMLCGSVTFFLGF+LMPWILVLVMIFYVVGIVS+LSMLGRS+LCCF+A
Sbjct: 62  GLASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSA 121

Query: 121 PTPRKDFHG 130
           PTPRKDF+G
Sbjct: 122 PTPRKDFNG 129

[Close]

BLAST of Lsi09G017240 vs. ExPASy TrEMBL
Match: A0A6J1JW24 (uncharacterized protein LOC111488035 OS=Cucurbita maxima OX=3661 GN=LOC111488035 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 7.3e-51
Identity = 111/128 (86.72%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPA 60
           MSRP+QDPQSG  HEISSLLLKILRSPPPPVPF+DHVLELSSAISSSS    PSSQ++P 
Sbjct: 3   MSRPQQDPQSGFLHEISSLLLKILRSPPPPVPFADHVLELSSAISSSSI-TFPSSQMSPT 62

Query: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSTLSMLGRSLLCCFTA 120
           GF ALLLGISLALMLCGSVTFFLGFMLMPWILV VMIFY+VGIVS++SMLGRS+LCCFTA
Sbjct: 63  GFVALLLGISLALMLCGSVTFFLGFMLMPWILVFVMIFYMVGIVSSVSMLGRSILCCFTA 122

Query: 121 PTPRKDFH 129
           PTPRKDFH
Sbjct: 123 PTPRKDFH 129

[Close]

BLAST of Lsi09G017240 vs. NCBI nr
Match: KAG7014655.1 (hypothetical protein SDJN02_24834, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.1 bits (588), Expect = 6.3e-57
Identity = 123/145 (84.83%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPA 60
           MSRP+QDPQSG  HEISSLLLKILRSPPPPVPF+DHVLELSSAISSSS    PSSQ++P 
Sbjct: 143 MSRPQQDPQSGFLHEISSLLLKILRSPPPPVPFADHVLELSSAISSSSI-TFPSSQMSPT 202

Query: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSTLSMLGRSLLCCFTA 120
           GFAALLLGISLALMLCGSVTFFLGFMLMPWILV VMIFY+VGIVS++SMLGRS+LCCFTA
Sbjct: 203 GFAALLLGISLALMLCGSVTFFLGFMLMPWILVFVMIFYMVGIVSSVSMLGRSILCCFTA 262

Query: 121 PTPRKDFHGEFLISFCFLVFIEIDF 146
           PTPRKDFHGEFL   CFLVFI   F
Sbjct: 263 PTPRKDFHGEFLFCLCFLVFIRFGF 286

[Close]

BLAST of Lsi09G017240 vs. NCBI nr
Match: XP_004151234.1 (uncharacterized protein LOC101208751 [Cucumis sativus] >KGN46462.1 hypothetical protein Csa_004800 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 9.1e-56
Identity = 119/129 (92.25%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPA 60
           M   RQDP+SG+F+EISSLLLKILRSPPPPVPFSDHVLELSSAI+SSSSRILPSSQ+TPA
Sbjct: 1   MIMARQDPRSGVFYEISSLLLKILRSPPPPVPFSDHVLELSSAITSSSSRILPSSQMTPA 60

Query: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSTLSMLGRSLLCCFTA 120
           GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVS+LSMLGRSL+CCFTA
Sbjct: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSSLSMLGRSLICCFTA 120

Query: 121 PTPRKDFHG 130
           PTPRKDFHG
Sbjct: 121 PTPRKDFHG 129

[Close]

BLAST of Lsi09G017240 vs. NCBI nr
Match: XP_008459845.1 (PREDICTED: uncharacterized protein LOC103498845 [Cucumis melo])

HSP 1 Score: 227.3 bits (578), Expect = 9.1e-56
Identity = 118/129 (91.47%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPA 60
           M+  +QDP+SG+FHEISSLLLKILRSPPPPVPFSDHVLELSS ISSSSSRILPSSQ+TPA
Sbjct: 1   MNMAQQDPRSGVFHEISSLLLKILRSPPPPVPFSDHVLELSSVISSSSSRILPSSQMTPA 60

Query: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSTLSMLGRSLLCCFTA 120
           GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVS+LS+LGRSL+CCFTA
Sbjct: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSSLSVLGRSLICCFTA 120

Query: 121 PTPRKDFHG 130
           PTPRKDFHG
Sbjct: 121 PTPRKDFHG 129

[Close]

BLAST of Lsi09G017240 vs. NCBI nr
Match: XP_038875874.1 (uncharacterized protein LOC120068233 [Benincasa hispida])

HSP 1 Score: 220.7 bits (561), Expect = 8.5e-54
Identity = 118/129 (91.47%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPA 60
           M+RP+Q PQSG+F+EISSLLLKILRSPPPPVPFSDHVLELSSAISSSS  ILPSSQ+TPA
Sbjct: 1   MNRPQQHPQSGVFYEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSG-ILPSSQMTPA 60

Query: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSTLSMLGRSLLCCFTA 120
           GFAALLLGISLALMLCGSVTFFLGFMLMPWILV VMIFYV GIVS+LSMLGRSLLCCFTA
Sbjct: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVSVMIFYVAGIVSSLSMLGRSLLCCFTA 120

Query: 121 PTPRKDFHG 130
           PTPRKDFHG
Sbjct: 121 PTPRKDFHG 128

[Close]

BLAST of Lsi09G017240 vs. NCBI nr
Match: XP_022155438.1 (uncharacterized protein LOC111022584 isoform X1 [Momordica charantia])

HSP 1 Score: 213.0 bits (541), Expect = 1.8e-51
Identity = 112/131 (85.50%), Postives = 123/131 (93.89%), Query Frame = 0


Query: 1   MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISSSSSRILPSSQITPA 60
           M RPR+DPQS + HEISSLL+KILRSPPPPVPFSDHVLELSS ISSSS  +LPSSQITPA
Sbjct: 2   MRRPREDPQSRVLHEISSLLMKILRSPPPPVPFSDHVLELSSVISSSSG-LLPSSQITPA 61

Query: 61  GFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSTLSMLGRSLLCCFTA 120
           G A+LLLGISLALMLCGSVTFFLGF+LMPWILVLVMIFYVVGIVS+LSMLGRS+LCCF+A
Sbjct: 62  GLASLLLGISLALMLCGSVTFFLGFLLMPWILVLVMIFYVVGIVSSLSMLGRSILCCFSA 121

Query: 121 PTPRKDFHGEF 132
           PTPRKDF+ +F
Sbjct: 122 PTPRKDFNAQF 131

[Close]

BLAST of Lsi09G017240 vs. TAIR 10
Match: AT1G27290.1 (unknown protein; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.4 bits (311), Expect = 7.8e-29
Identity = 71/130 (54.62%), Postives = 95/130 (73.08%), Query Frame = 0


Query: 1   MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISS--SSSRILPSS--- 60
           M R R + QS +F+++SSL+L +LRSPP P+   DH  +  + I    SS R   SS   
Sbjct: 2   MRRQRDEQQSRVFYDLSSLVLNLLRSPPMPISLPDHFPDPPARIRPPFSSHRFSSSSPSL 61

Query: 61  -QITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSTLSMLGRSL 120
             I+P+GFA+LLLGIS+ALMLCGSVTFF+GF+LMPW+L L+++FYV GIVS +SM+GRS+
Sbjct: 62  AHISPSGFASLLLGISVALMLCGSVTFFIGFLLMPWVLALILVFYVAGIVSAISMVGRSI 121

Query: 121 LC-CFTAPTP 124
           LC   T P+P
Sbjct: 122 LCYVLTPPSP 131

[Close]

BLAST of Lsi09G017240 vs. TAIR 10
Match: AT1G27290.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.4 bits (311), Expect = 7.8e-29
Identity = 71/130 (54.62%), Postives = 95/130 (73.08%), Query Frame = 0


Query: 1   MSRPRQDPQSGIFHEISSLLLKILRSPPPPVPFSDHVLELSSAISS--SSSRILPSS--- 60
           M R R + QS +F+++SSL+L +LRSPP P+   DH  +  + I    SS R   SS   
Sbjct: 2   MRRQRDEQQSRVFYDLSSLVLNLLRSPPMPISLPDHFPDPPARIRPPFSSHRFSSSSPSL 61

Query: 61  -QITPAGFAALLLGISLALMLCGSVTFFLGFMLMPWILVLVMIFYVVGIVSTLSMLGRSL 120
             I+P+GFA+LLLGIS+ALMLCGSVTFF+GF+LMPW+L L+++FYV GIVS +SM+GRS+
Sbjct: 62  AHISPSGFASLLLGISVALMLCGSVTFFIGFLLMPWVLALILVFYVAGIVSAISMVGRSI 121

Query: 121 LC-CFTAPTP 124
           LC   T P+P
Sbjct: 122 LCYVLTPPSP 131

The following BLAST results are available for this feature:

BLAST of Lsi09G017240 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi09G017240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDL5	4.4e-56	92.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095290 PE=4 SV=1	[more]
A0A1S3CB48	4.4e-56	91.47	uncharacterized protein LOC103498845 OS=Cucumis melo OX=3656 GN=LOC103498845 PE=...	[more]
A0A6J1DMY8	8.6e-52	85.50	uncharacterized protein LOC111022584 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DPD1	1.5e-51	86.82	uncharacterized protein LOC111022584 isoform X4 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1JW24	7.3e-51	86.72	uncharacterized protein LOC111488035 OS=Cucurbita maxima OX=3661 GN=LOC111488035...	[more]

BLAST of Lsi09G017240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014655.1	6.3e-57	84.83	hypothetical protein SDJN02_24834, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004151234.1	9.1e-56	92.25	uncharacterized protein LOC101208751 [Cucumis sativus] >KGN46462.1 hypothetical ...	[more]
XP_008459845.1	9.1e-56	91.47	PREDICTED: uncharacterized protein LOC103498845 [Cucumis melo]	[more]
XP_038875874.1	8.5e-54	91.47	uncharacterized protein LOC120068233 [Benincasa hispida]	[more]
XP_022155438.1	1.8e-51	85.50	uncharacterized protein LOC111022584 isoform X1 [Momordica charantia]	[more]

BLAST of Lsi09G017240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G27290.1	7.8e-29	54.62	unknown protein; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bac...	[more]
AT1G27290.2	7.8e-29	54.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34781:SF2	TRANSMEMBRANE PROTEIN	coord: 1..129
None	No IPR available	PANTHER	PTHR34781	TRANSMEMBRANE PROTEIN	coord: 1..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G017240.1	Lsi09G017240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane