Lsi09G015390.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview
NameLsi09G015390.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr09: 23516382 .. 23517329 (-)
Sequence length498
RNA-Seq ExpressionLsi09G015390.1
SyntenyLsi09G015390.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATACTTTGGTAATTCTCTCCTTCCCCACCATGTTCTTAGTTAGGCTTGAGCAATTTGAACCTCTTATTGATTCAACCTCCTTGTTGGCTCAAATTTCCAACGATGCCGACGTGAAATTCACACCATTGATGCTCATGATAATCGTCTCGAACCATTCCCCTCACTTCGTCGCAACGCTGCAATTATCCCGACGATTGTTCATCAACTTCTCCGTCGATCATAATAAAAGTTCCAAAGTTTCCCTTGAACCCTTCCATGAGGCTATGTTGGATGGTGGAAGCTTTTCTTCAATGACAATCCATCTTTTGGATAAAACAAACCAAATGGTCCTTAGATTTGAGACTTCAAGTTAGTATATCTATATATATAATTCCTTTCTACTCTGGTATGATGAAGGTGCTAAAGAAGTCTCAACCTAGTTGAGATGTGTCGGTGCACCTCTTGATGCTTCTAATTATATGATGCTAGAACATTTTAGATTATTACTTTTTATGTATTGTTACAAGAATTTCGGTTTCTTCCGATGAAATCTTTTCCGAGGCTTTCAACCATCTCTAAAATTCTTGTAGTGATCTTGACTGTTTTCTGATTTTTATTTGATTTCCCTTTATATAAATTTTAGGCCATGATATTCCACCGTTGCATCATGAATTGACATTGTCACCTCCCCAAGCAGAGAATTTAGGGCAAGTTGAATATGGAAATTTTTTCACAGTTACTTCTAAAGAGTTAAGAAGGATTATAAAAGAATTACCTATCTTCCATCAAGATTCAGGTATTTATTATTATTGACACTCTCCTTTTTCTTTTTTTATTTCATAATTATTTGAAAGAAAATGGTTTATGTTTCTAACATAACTTGTCTACGTGTTACAGTTTGTGTTACGGTAACGGGTTCTCGAGTCAAGTTCTCTATTCAATCTAAGGAGATTGTTCTTACGAAAGAG

mRNA sequence

TATACTTTGGTAATTCTCTCCTTCCCCACCATGTTCTTAGTTAGGCTTGAGCAATTTGAACCTCTTATTGATTCAACCTCCTTGTTGGCTCAAATTTCCAACGATGCCGACGTGAAATTCACACCATTGATGCTCATGATAATCGTCTCGAACCATTCCCCTCACTTCGTCGCAACGCTGCAATTATCCCGACGATTGTTCATCAACTTCTCCGTCGATCATAATAAAAGTTCCAAAGTTTCCCTTGAACCCTTCCATGAGGCTATGTTGGATGGCCATGATATTCCACCGTTGCATCATGAATTGACATTGTCACCTCCCCAAGCAGAGAATTTAGGGCAAGTTGAATATGGAAATTTTTTCACAGTTACTTCTAAAGAGTTAAGAAGGATTATAAAAGAATTACCTATCTTCCATCAAGATTCAGTTTGTGTTACGGTAACGGGTTCTCGAGTCAAGTTCTCTATTCAATCTAAGGAGATTGTTCTTACGAAAGAG

Coding sequence (CDS)

TATACTTTGGTAATTCTCTCCTTCCCCACCATGTTCTTAGTTAGGCTTGAGCAATTTGAACCTCTTATTGATTCAACCTCCTTGTTGGCTCAAATTTCCAACGATGCCGACGTGAAATTCACACCATTGATGCTCATGATAATCGTCTCGAACCATTCCCCTCACTTCGTCGCAACGCTGCAATTATCCCGACGATTGTTCATCAACTTCTCCGTCGATCATAATAAAAGTTCCAAAGTTTCCCTTGAACCCTTCCATGAGGCTATGTTGGATGGCCATGATATTCCACCGTTGCATCATGAATTGACATTGTCACCTCCCCAAGCAGAGAATTTAGGGCAAGTTGAATATGGAAATTTTTTCACAGTTACTTCTAAAGAGTTAAGAAGGATTATAAAAGAATTACCTATCTTCCATCAAGATTCAGTTTGTGTTACGGTAACGGGTTCTCGAGTCAAGTTCTCTATTCAATCTAAGGAGATTGTTCTTACGAAAGAG

Protein sequence

YTLVILSFPTMFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINFSVDHNKSSKVSLEPFHEAMLDGHDIPPLHHELTLSPPQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE
Homology
BLAST of Lsi09G015390.1 vs. ExPASy TrEMBL
Match: A0A5D3BTK3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00820 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 9.1e-71
Identity = 139/158 (87.97%), Postives = 150/158 (94.94%), Query Frame = 0

Query: 11  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINF 70
           MFLVRLEQFEPLID+TSLLAQ++ DADVKFTPLMLMIIVSN SP FVATLQLSRRLF NF
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60

Query: 71  SVDHNKSSKVSLEPFHEAMLDG--HDIPPLHHELTLSPPQAENLGQVEYGNFFTVTSKEL 130
           SVDHNKSSKVSL+PFH+AMLDG  HD+PPLHHEL LSPPQAENLGQVEYGNFFTVTS+EL
Sbjct: 61  SVDHNKSSKVSLQPFHDAMLDGGSHDVPPLHHELALSPPQAENLGQVEYGNFFTVTSREL 120

Query: 131 RRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE 167
           RRIIKELP+FHQD+V VTVTGS+VKFSIQSKEI+LTKE
Sbjct: 121 RRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTKE 158

BLAST of Lsi09G015390.1 vs. ExPASy TrEMBL
Match: A0A1S3C8J1 (uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.2e-68
Identity = 139/181 (76.80%), Postives = 150/181 (82.87%), Query Frame = 0

Query: 11  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINF 70
           MFLVRLEQFEPLID+TSLLAQ++ DADVKFTPLMLMIIVSN SP FVATLQLSRRLF NF
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60

Query: 71  SVDHNKSSKVSLEPFHEAMLDG-------------------------HDIPPLHHELTLS 130
           SVDHNKSSKVSL+PFH+AMLDG                         HD+PPLHHEL LS
Sbjct: 61  SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120

Query: 131 PPQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTK 167
           PPQAENLGQVEYGNFFTVTS+ELRRIIKELP+FHQD+V VTVTGS+VKFSIQSKEI+LTK
Sbjct: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 180

BLAST of Lsi09G015390.1 vs. ExPASy TrEMBL
Match: A0A1S4E4N8 (uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 3.0e-45
Identity = 97/180 (53.89%), Postives = 126/180 (70.00%), Query Frame = 0

Query: 11  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINF 70
           MFLVRL+ F+PL D+TS LAQI+ +AD+KFTPL   II SN SP FVA LQ++   FIN+
Sbjct: 3   MFLVRLKDFDPLFDATSRLAQIAREADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFINY 62

Query: 71  SVDHNKSSKVSLEPFHEAMLDG------------------------HDIPPLHHELTLSP 130
            VD++ +S++SLE FH+A+LDG                           P +HHEL+L+P
Sbjct: 63  KVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSSHAPKVHHELSLTP 122

Query: 131 PQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE 167
            Q E+LG+V+Y  FF++ SK+LRR+I+ LPIFH DS+CVT TGS+VKFSI SKEIVLTKE
Sbjct: 123 SQEEDLGEVDYAKFFSIDSKDLRRVIRNLPIFHGDSICVTATGSQVKFSIASKEIVLTKE 182

BLAST of Lsi09G015390.1 vs. ExPASy TrEMBL
Match: A0A5D3BV00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00830 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 7.5e-41
Identity = 104/187 (55.61%), Postives = 124/187 (66.31%), Query Frame = 0

Query: 11  MFLVRLEQFEPLIDSTSLLAQISND-ADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFIN 70
           MFLV+L +FEPL+DSTS LAQ SND AD+KF P  L +IV N SP F ATLQLS R F N
Sbjct: 1   MFLVKLTEFEPLLDSTSYLAQYSNDNADIKFAPGKLFLIVPNRSPRFFATLQLSPRWFSN 60

Query: 71  FSVDHNKSSKVSLEPFHEAMLDGHD-------------------------IPPLHHELTL 130
           +SVDH  SSKVSLE FH+AMLDG D                         I P HHELTL
Sbjct: 61  YSVDHVHSSKVSLESFHDAMLDGGDFSSMSIHLLDKTNQMFLRFDTPSSQIQPSHHELTL 120

Query: 131 SPPQAENL----GQVEYGNFFTVTSKELRRIIKELPIFHQDS-VCVTVTGSRVKFSIQSK 167
           SPPQ+E++     +++   F  V SK LRR+IKELPIFH DS +CV+VT S++KFSI SK
Sbjct: 121 SPPQSEDIQICEHELDLDKFVIVKSKSLRRVIKELPIFHNDSIICVSVTTSQIKFSIASK 180

BLAST of Lsi09G015390.1 vs. ExPASy TrEMBL
Match: A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.7e-38
Identity = 103/186 (55.38%), Postives = 124/186 (66.67%), Query Frame = 0

Query: 11  MFLVRLEQFEPLIDSTSLLAQISND-ADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFIN 70
           MFLV+L+ F+PL+D+TS LAQIS D AD+KFTP    II S+ SP F+ATLQLS + F  
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 71  FSVDHNKSSKVSLEPFHEAMLDG-------------------------HDIPPLHHELTL 130
           FSVD++ SSKVSLE FH+A+LDG                          +I PLHHELTL
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 131 SPPQAEN--LGQVEYG--NFFTVTSKELRRIIKELPIFHQDS-VCVTVTGSRVKFSIQSK 166
           SPPQAE+  +GQ E     +F V SK LRRIIK+LPIF  DS + V VT SRVKFSI SK
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSIISVDVTNSRVKFSIASK 180

BLAST of Lsi09G015390.1 vs. NCBI nr
Match: TYK02993.1 (uncharacterized protein E5676_scaffold46G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 276.2 bits (705), Expect = 1.9e-70
Identity = 139/158 (87.97%), Postives = 150/158 (94.94%), Query Frame = 0

Query: 11  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINF 70
           MFLVRLEQFEPLID+TSLLAQ++ DADVKFTPLMLMIIVSN SP FVATLQLSRRLF NF
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60

Query: 71  SVDHNKSSKVSLEPFHEAMLDG--HDIPPLHHELTLSPPQAENLGQVEYGNFFTVTSKEL 130
           SVDHNKSSKVSL+PFH+AMLDG  HD+PPLHHEL LSPPQAENLGQVEYGNFFTVTS+EL
Sbjct: 61  SVDHNKSSKVSLQPFHDAMLDGGSHDVPPLHHELALSPPQAENLGQVEYGNFFTVTSREL 120

Query: 131 RRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE 167
           RRIIKELP+FHQD+V VTVTGS+VKFSIQSKEI+LTKE
Sbjct: 121 RRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTKE 158

BLAST of Lsi09G015390.1 vs. NCBI nr
Match: XP_008458682.1 (PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo])

HSP 1 Score: 267.3 bits (682), Expect = 8.8e-68
Identity = 139/181 (76.80%), Postives = 150/181 (82.87%), Query Frame = 0

Query: 11  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINF 70
           MFLVRLEQFEPLID+TSLLAQ++ DADVKFTPLMLMIIVSN SP FVATLQLSRRLF NF
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60

Query: 71  SVDHNKSSKVSLEPFHEAMLDG-------------------------HDIPPLHHELTLS 130
           SVDHNKSSKVSL+PFH+AMLDG                         HD+PPLHHEL LS
Sbjct: 61  SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120

Query: 131 PPQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTK 167
           PPQAENLGQVEYGNFFTVTS+ELRRIIKELP+FHQD+V VTVTGS+VKFSIQSKEI+LTK
Sbjct: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 180

BLAST of Lsi09G015390.1 vs. NCBI nr
Match: KAG7013723.1 (hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-48
Identity = 112/181 (61.88%), Postives = 127/181 (70.17%), Query Frame = 0

Query: 11  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINF 70
           MFLV+L+QFEPL+D+TSLL QIS DADV+FT  ML +I S+ SP FVATLQ+S RLF N+
Sbjct: 1   MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNY 60

Query: 71  SVDHNKSSKVSLEPFHEAMLDGHDI-------------------------PPLHHELTLS 130
           SVDH  SSKVSLE FH+AMLDG                            PPLH EL LS
Sbjct: 61  SVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMILRYENPSSNDPPLHLELPLS 120

Query: 131 PPQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTK 167
           PPQAE+LGQVEYG FFTV SK LR+IIKELP+FH D V V  T +RVKFSI SKEI +TK
Sbjct: 121 PPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTK 180

BLAST of Lsi09G015390.1 vs. NCBI nr
Match: XP_016903187.1 (PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 6.1e-45
Identity = 97/180 (53.89%), Postives = 126/180 (70.00%), Query Frame = 0

Query: 11  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINF 70
           MFLVRL+ F+PL D+TS LAQI+ +AD+KFTPL   II SN SP FVA LQ++   FIN+
Sbjct: 3   MFLVRLKDFDPLFDATSRLAQIAREADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFINY 62

Query: 71  SVDHNKSSKVSLEPFHEAMLDG------------------------HDIPPLHHELTLSP 130
            VD++ +S++SLE FH+A+LDG                           P +HHEL+L+P
Sbjct: 63  KVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSSHAPKVHHELSLTP 122

Query: 131 PQAENLGQVEYGNFFTVTSKELRRIIKELPIFHQDSVCVTVTGSRVKFSIQSKEIVLTKE 167
            Q E+LG+V+Y  FF++ SK+LRR+I+ LPIFH DS+CVT TGS+VKFSI SKEIVLTKE
Sbjct: 123 SQEEDLGEVDYAKFFSIDSKDLRRVIRNLPIFHGDSICVTATGSQVKFSIASKEIVLTKE 182

BLAST of Lsi09G015390.1 vs. NCBI nr
Match: XP_038875055.1 (uncharacterized protein LOC120067580 [Benincasa hispida])

HSP 1 Score: 179.9 bits (455), Expect = 1.8e-41
Identity = 106/182 (58.24%), Postives = 122/182 (67.03%), Query Frame = 0

Query: 11  MFLVRLEQFEPLIDSTSLLAQISNDADVKFTPLMLMIIVSNHSPHFVATLQLSRRLFINF 70
           MFLV+L  FEPL+D+TS LAQISN ADVKFTPL   +I    SP FVATLQLS++ F N+
Sbjct: 1   MFLVKLTNFEPLLDATSYLAQISNYADVKFTPLEFYLIAPYPSPRFVATLQLSQKCFTNY 60

Query: 71  SVDHNKSSKVSLEPFHEAMLDG-------------------------HDIPPLHHELTLS 130
           SVDH  +SKV LE FH+A+LDG                          +IPPLHHELT S
Sbjct: 61  SVDHEHTSKVDLESFHDAILDGGSFASMTIHLLEKPNQMILRFQTPSSEIPPLHHELTFS 120

Query: 131 PPQ-AENL--GQVEYGNFFTVTSKELRRIIKELPIFHQDS-VCVTVTGSRVKFSIQSKEI 164
           PPQ A+N   GQ+E G FF V S+ LRRIIKELPIF  DS VCV VT S++KFSI SKEI
Sbjct: 121 PPQLADNNIGGQLEEGKFFIVKSEALRRIIKELPIFQDDSVVCVGVTSSQIKFSIASKEI 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BTK39.1e-7187.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C8J14.2e-6876.80uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=... [more]
A0A1S4E4N83.0e-4553.89uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=... [more]
A0A5D3BV007.5e-4155.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DZ072.7e-3855.38LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
TYK02993.11.9e-7087.97uncharacterized protein E5676_scaffold46G00820 [Cucumis melo var. makuwa][more]
XP_008458682.18.8e-6876.80PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo][more]
KAG7013723.11.6e-4861.88hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_016903187.16.1e-4553.89PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo][more]
XP_038875055.11.8e-4158.24uncharacterized protein LOC120067580 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.70.10.10coord: 6..97
e-value: 3.9E-6
score: 28.3
NoneNo IPR availableGENE3D3.70.10.10coord: 98..166
e-value: 1.8E-5
score: 26.4

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi09G015390Lsi09G015390gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi09G015390.1.exon.3Lsi09G015390.1.exon.3exon
Lsi09G015390.1.exon.2Lsi09G015390.1.exon.2exon
Lsi09G015390.1.exon.1Lsi09G015390.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi09G015390.1.CDS.3Lsi09G015390.1.CDS.3CDS
Lsi09G015390.1.CDS.2Lsi09G015390.1.CDS.2CDS
Lsi09G015390.1.CDS.1Lsi09G015390.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi09G015390.1Lsi09G015390.1-proteinpolypeptide