Lsi05G005360.1 (mRNA) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi05G005360.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	Unknown protein
Location	chr05: 6673594 .. 6679496 (+)
Sequence length	375
RNA-Seq Expression	Lsi05G005360.1
Synteny	Lsi05G005360.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACGGTTAGCAGAGTTGTAAGGCCAAGAGGTGGAGCCACGACCGTCCAAGCGACCCAAGCCATCGATGAACAAGTTGTTCACTTGGTCGAAACTAAGCCAATAGTTGCCGGTGGCGAAATGCTTATCGGCAGGAGCCAACAATTCGCCGTCAAGTTGTATACGAATGAAGCCATGGCATGGACCTTGAAGCAGCAATGGTAAAACTAAGAATTTCCCTTGTGCTGGTATTAAAACTACACCACCTCCATTGTTTCCACAAGCTTGGCTCCATGCCATACTTAATGCCTATTATACAAATAAACTCATTAACCTTTTATAATCATCATCTTTCAACAAAATGATAGCTTAAAATTTCAAATTTCACAGTTTTGAGAATCATTTTTTCTTTGTTTTTGAATTTAACTATTTAACAAAGCTCATTTAGAAAGTGAAGACTCATTGAAATTTATCCTTTTTTTTTTCTTTATATATAAATTTTATTTTCAAACTAAAAAGAAATGAAAACAAAAGTACATTATGTACCATAACTGTCTAGTATATGTTGTGTCTTAGTCTCTTAGATGATGAAAAAAATTAGAGCTGATTTGATAATGTACTTTTTATAATAATAATAATAATAATAATAATTACTTCTACCTAAGATTTATTTGTCTTTTTTAATCAACTATGTACGATAGATTTTGAAGTATAAGTCAAATTTTGAAAATTTAAAAAGTAGCAAAAATTTCATACATACATATACTAGTGCTTCTAATGCTTTTGTTTTTTTAAAAAAAAAAAAAAATTAAAACAAGAAACAAAAACATTATCGAGATAATAACAATTTTTATTGTCACTAATTTTATAAATTACTACATTGAAAACTATTAAAAAAAAGTTATTAATTAGAATTGAATTTTAAAGCATCTGTGGTTTTATATTGAAAATAAAAATTTTTACCTTACTATTATCCGTTATTCCGTCAGGTTTGGCACCAAATTGCATAATATTGAACACTTTTTGAGCATCACAATATTTACAAATGCAAAATAACATCATAATCGACATTATATATCCAATTGCTAAAGAACTCAAACCCATTTTTTTTTTGCTTTTTTTTTTCTTTGTTCCTTTCTCAAAGATTCTAATTTTTTATCTTTTTTTTTTTCATTTTTATAACAAAATTTTAAAAACCAAAAATGGAATAACTCTCAATGAGTTGTTTTATTCTTTTATAGGTCAATTTATTTTGTTGGAAAATCTCCTATAATGATTTTATTGGTAAACCATGTCATTGAGAGATTAATGAGAATGAACTTTTAAAGGAAAATAATTAGTCTCACCCAATGATGAAAGTATTTTTTTGATATGTCGATATATCCATAAATCAAAAGATTCGATATCAATATTAAATATTTATAGATATCTCCAACATTTTTTTTATTAATACTTCTAAAACATAAAAATGTCATCTATTTAGTCTAATATGAACAGAAATACTAATAACAATATCCATAATTAGTTTGGGAGTAAAAACAATTCAATTATTAATCTAAATAAATTTTATAAAATTCGTGATTTACATAAATATTCGTCGATATCAATATTTTGTCAATATATCCATCAATATATTCGTAAAATTGAAATGTCGATATCGATACTTTGTCGATATTTTATCCGTAAAATTAAAATGTCGATATCGATATCGACATCAATAGTTTAATCTTTGGTCTTACCTTCCATTTCTTCTGTATCTCTGATTTCTTTACGAAAATGAATTTAGAATTAAACCTTAAACTCCATTACATGTTGAGTAGTTAAAAATCCTCTCGAGGAACTCAATTCTTTTAACAAATTATGTTTTATTGAAGAGTAGGAAAGATGCATGGAAATTGAAGGGAAAAAATGTGAGTCTCATTTTTACAAAGGTATCAACTTTAATTTCTCAGTCGAAATATCACAATTAACTTTTGTATGTCTTTAACATAATTTTGAGAGTGAAGATCAGACTATTGATTGTAGTTTGCACTTTATTCATTGAACTAAATGTCATTTAAGTTATGATTGTTGTGACATCCACACACTTTCTCTTAGTTCAACAATGTATATAAATGTATTTGAGTCTTTAATCTCTTAATTGAGAATATATATGTCTCAAGTAATCGAATTATCCTCAAATATGTCAACCGCTACAACCTCTAGAAGAGTGACATTTTTATTCTATAACATTCATAGATGATGGTATCTATCAACAAGGGTTAAAAAGGGTATTATTAGATATCAAAACCATATGAGGAGGAGATAAGTTTTATAGAAAAGGAAAAAAAAATAGTACACCTAACTTAATTGTTGTTAGGCAATTTAGATTGTGTTTTATATTTTCGTAGATTCACTAAGATTCTTCAATAAATATACATTCAACATATGTGTTTTTAATGTTTTCATTATATTTAGATTTATATCTTAAATTCTAAAAATTCAAATTTATATTTAAAAAGGTAAAAATCTTAATAAAATATGATATTTAATGTTATAAATCTAATTTATTTTTTATTAAAAAAATAAAAAATAAAATATATTATAATATTATAATTTATATCTAACTAGCTAGGTTGGATCAGGAGATTAGGTTATTTGAGTTAGATTTATTTCCTATTCGAAATAATGTTTTAATATATTAGGTACCTAAGTATTATAATTATATTTTATTTGGTATAAATAGGTCCTTAGATATGTACTTATTAGGGAATTAAGCCTTAGGCAGTCTTTCCAATTTCTTCCCATTTTTACCTTCCTTTAAATTTCATAATAATAAGAACTAACGTGTTCTATACTAATTATTTAAATATCAGAAAGTATATGAAACCTCATTAAAGGGGACTCATATCAATAGAAAAGATCACTAGTTTTTCTCAAATTCATCCCATGTTAAAAATAAATGTGAAACTTCTTACATCGAAAGAATTGTTCAGTTTGGTCACCATAATGTGTGGGAGTATTGCTTGATTTTTACACCATGCATAACCGTAAGTGTATAGTGTCAAGTTTTAATACAGTGATTGAGTTCGTGTATCGTTCTCAGAATTCGGGCCAATTTAGCTAAGTACCTATTGGAAGAGAAATTTTGGTCAATCAAAACTTGTCACGTCATCACAACAAAAGCTAATTTTATTAAATTTGGGGCCAATTAAAAATTACCGTGTCCCTAATTAAAATTTGAAGACAAATAAATGACAAACTAAAAAATGTCACGTGTCTCATATCTGGCCATCTGATCACAAACGATAGATTTATTGAATTCAATGGTGATTAAGCTCGGACCACAATTAATAAATTTGAGTTAAAGTCCAATTGAGCTTGAAATTATAAATTGGATCGAACCGAATAATTAAAGTTGTCTGGGTCCAAAGCCCAACCCAATTCAAATCCACGACGAAAATTTGGGTCAAAGAAAAGACTAGGCGTGAACCCAATCTTTGGGCCCAAGAGCAACTGGATCCAAGGCCATATAAGATCTATGAAAACCCTCTGTAAATAGATGTCTTACCCCTTCATTTGGGAGGGGAGAATTAAAGCTTTGAAGACCAAATATGAAGTTCTCAAGCTTTGAAGATCAAAGGTCTCAATTTTTGAACAACTGGAGCTCTAAAGCTCTGAAGCTCTGAACCTCTAACGACTTGAAAATTGAAGCCCTTAAGATATGAAGAACACGATATTGTTGATATACCAAATTTGAAGTATATCATTTAGAATGATTATTAAAATTTAACATTAGACTTTCAATTGTATATTTATATTAATTCAAAATGAATTACAAGTAGATCATTAGCGTACCAACAACATATTATAATGAGCTAAAATGCAGAACTAAGTATATAGTGTATCAATAATTTATCAACACTCATTCAACTTTTATTTGAATTGTAACATAGATGTATTATAGTATGTAAATAGTCATTACACAAATTCATTTCATGTACATTTTTAGTGTATCAATAGTATATCACTCATAACTTAAATTTGTTTTAAGTATTGTATTGGTGCATCGATAGTATATCAATACTCATTCAAAAATTTAATTTTAATTATATATATTATTAGTGCATTAGTAGTTATAGTTAGTCACTTATTCAAAATTCATTTAAAGTATACATTAACTTATCAATATTGTATCAATCTTCATAAAAAAAAATAATTTCAAGTGTATCATTAATGTATTAGTAGTATATCAACATTTCTTCTAAATAAAATTTTAAGTATAATATTGGTATATTAGTATTATATCAACATTAACTCAAAATCCAATTTCAAGTATATCATTAGTGTATCAATAGTTTATCAGCATTCATTCAAAATGGTTACTAACATAATGGATTGAACCATTATGAGCTTATTATAATGTACTAGAAAAATAATGTTCTATAGCAGACGAATAAGGATTGAAATTAAGTCCACAAATACTAGTAAATGAACAAGCACTTCTTGACTAATAAATATGGTTTATAAATAATTTTGGTATATCTATTGTATAACTTATATACTTTATGTTTGGTATATTAGTCCGTTTGATATATCAAATATAAATAATATCATATATATTACTGATATACATGTTGATACACCAATAAGGATAAATTTGGAATGATAAAAAACAAAAATCTAACTTTTATGTTTTTTTTTCTATATTTTCAAATTTTGAAAAACCAAGCAAAATTTGTAACTTTAAGAATTTTTTTTTCTATTCTTGCAACTGCCCAAAAAATAAATGTGAAATTACTTAAATTGGAAGAATTAGCACAATGTGTGTGGTTGATAGGTTTTTTTTAGGGTAATGGTAATGATTAGTAATTTTAGGGATAATAATCAAGTGTATAACAACACTTTTAAAAAATTGTAAATATAGCAAAGTCATAGACTCTTGAGGTCTATCCTAGACCATAAAAGCTTATCACTAATAGACTTTGATATATTTGCAATTTTTTTAAAATGTTATTATATATATTAATACTTACGAGTGTCCTTGGAGGTAAAGAAAAGAAGCATCTTTCAAACATGCAGATTACAGTTCTTTTTAGCTATTGGATGAGACAGACACAATGGCTTCATTTTGAAACATCCCAGAAGGAAGAACAAAGACTAATTAATTAATTACTTAAAGACAAGAAGGAGGCAATTGAGAGCCAAAAGCAGAACCCCTAACATTTTGACAAATGGAAGTGGAGGAGGCAGCGCCATTGAAGGCTAAGTTAATGTTGTGTAGCACTATGCCTTGGCATGGAGCAACTTGGCTACAATTGAAAGTTACTGCTGCTTGGATACTTGAAGTTCCTCTTATGTCTTCATACTTCACATCTTTAATTTGTACTCTTGATTCACTCTGCAACCACAGACATTTTGCTTTAGATAATCAACTCTGGTTAATAAACCAAATAAGTTTCAAGTAATTCATGTATATATATATACCACTTTAGTATAGCAAAGATTGTGGGGACAATAGTTCTGGTCGATGACGATAGGGTTATTGACATTATGCATTTCGATATTCAAAAATGCAATGTTGCTAACCACGCTTGAATACGATGTTGACCATGTTTTGATCCTGACGCCATTCATCGTGCCATAGAAGTTGGTGTCTCTTACTGTGATTCTAGAGACGTCTGCTTCATTTGGATACTTTCCGAGACTGCCAATGCTGATTCCATGGCCAGGACCGCAGTGGACATTAGTTATGTTGATGGTTTGACTTCCAGGGCCCAAGGCGATGCAATCGTCTCCAGTGGCAATCAACGAATTTTGGATGGTGATACCTGTAGACATGCCAATGCGGAATCCGTCTGTGTTGGGACTGTCTTGTGGTGCAATTACTGTAACATTATCAAACACAACGTCGTTGCACCCATTCACTGCGAAATGACATGA

mRNA sequence

ATGGGACGAGTTGTAAGGCCAAGAGGTGGAGCCACGACCGTCCAAGCGACCCAAGCCATCGATGAACAAGTTGTTCACTTGGTCGAAACTAAGCCAATAGTTGCCGGTGGCGAAATGCTTATCGGCAGGAGCCAACAATTCGCCGTCAAGTTGTATACGAATGAAGCCATGGCATGGACCTTGAAGCAGCAATGGTCCTTAGATATGGCCCAAGGCGATGCAATCGTCTCCAGTGGCAATCAACGAATTTTGGATGGTGATACCTGTAGACATGCCAATGCGGAATCCGTCTGTGTTGGGACTGTCTTGTGGTGCAATTACTGTAACATTATCAAACACAACGTCGTTGCACCCATTCACTGCGAAATGACATGA

Coding sequence (CDS)

ATGGGACGAGTTGTAAGGCCAAGAGGTGGAGCCACGACCGTCCAAGCGACCCAAGCCATCGATGAACAAGTTGTTCACTTGGTCGAAACTAAGCCAATAGTTGCCGGTGGCGAAATGCTTATCGGCAGGAGCCAACAATTCGCCGTCAAGTTGTATACGAATGAAGCCATGGCATGGACCTTGAAGCAGCAATGGTCCTTAGATATGGCCCAAGGCGATGCAATCGTCTCCAGTGGCAATCAACGAATTTTGGATGGTGATACCTGTAGACATGCCAATGCGGAATCCGTCTGTGTTGGGACTGTCTTGTGGTGCAATTACTGTAACATTATCAAACACAACGTCGTTGCACCCATTCACTGCGAAATGACATGA

Protein sequence

MGRVVRPRGGATTVQATQAIDEQVVHLVETKPIVAGGEMLIGRSQQFAVKLYTNEAMAWTLKQQWSLDMAQGDAIVSSGNQRILDGDTCRHANAESVCVGTVLWCNYCNIIKHNVVAPIHCEMT

Homology

[Close]

BLAST of Lsi05G005360.1 vs. ExPASy TrEMBL
Match: A0A0A0L2V8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063630 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.4e-14
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 3  RVVRPRGGATTVQATQAIDEQVVHLVETKPIVAGGEMLIGRSQQFAVKLYTNEAMAWTLK 62
          RV RP    T  QATQ +DEQVV + +TKP+VA G++LI  SQQFA+KLYTN+AMAWTLK
Sbjct: 14 RVGRPSRSTTAGQATQTVDEQVVDIFDTKPMVADGKLLIRGSQQFAIKLYTNDAMAWTLK 73

Query: 63 QQW 66
          QQW
Sbjct: 74 QQW 76

[Close]

BLAST of Lsi05G005360.1 vs. NCBI nr
Match: KAE8650114.1 (hypothetical protein Csa_010527, partial [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 7.1e-14
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 3  RVVRPRGGATTVQATQAIDEQVVHLVETKPIVAGGEMLIGRSQQFAVKLYTNEAMAWTLK 62
          RV RP    T  QATQ +DEQVV + +TKP+VA G++LI  SQQFA+KLYTN+AMAWTLK
Sbjct: 14 RVGRPSRSTTAGQATQTVDEQVVDIFDTKPMVADGKLLIRGSQQFAIKLYTNDAMAWTLK 73

Query: 63 QQW 66
          QQW
Sbjct: 74 QQW 76

The following BLAST results are available for this feature:

BLAST of Lsi05G005360.1 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi05G005360.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2V8	3.4e-14	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063630 PE=4 SV=1	[more]

BLAST of Lsi05G005360.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650114.1	7.1e-14	66.67	hypothetical protein Csa_010527, partial [Cucumis sativus]	[more]

BLAST of Lsi05G005360.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi05G005360	Lsi05G005360	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G005360.1.exon.1	Lsi05G005360.1.exon.1	exon
Lsi05G005360.1.exon.2	Lsi05G005360.1.exon.2	exon
Lsi05G005360.1.exon.3	Lsi05G005360.1.exon.3	exon
Lsi05G005360.1.exon.4	Lsi05G005360.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G005360.1.CDS.1	Lsi05G005360.1.CDS.1	CDS
Lsi05G005360.1.CDS.2	Lsi05G005360.1.CDS.2	CDS
Lsi05G005360.1.CDS.3	Lsi05G005360.1.CDS.3	CDS
Lsi05G005360.1.CDS.4	Lsi05G005360.1.CDS.4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi05G005360.1	Lsi05G005360.1-protein	polypeptide