Lsi04G009290 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCAAAGTAATTTCATGTCACACTGTTGGCTCATGGAAGCAGCAGCTACTCAAAGCCAAACTATACAACAAGCTGGTATTAATCTTTACTTCAAACTTATCTCTGTCTTTAAATTTGATTAAATAATTGTCTTTTAATTTACATGAAAACCAATTCAAATTTGAATCCAATTTCTTCCACCTACAACCCTTGGCTATTCACTTTTTAAATGTGTTTTAAATTAAAATTAAATCCAAAATTTTGAAAAATTAAGGAACTGTTTGATAATATCTTTAGTTTTGATTTTTTATTTTTGAAATTAAACTTATAATCTCCACTTTTATTTCTAGTTTTCTATTTTTTAAATATGTTTGCCTCTCTTGAATTTTTTAGTCAGATTCGAAAAAACAAAAACTATCTTTTTTTTACTTTTCTAACATTTATCTAGCTTGATTTTTGAAAATATAAATAGTATTCAAATAACAAAATAAAAAAAACTTATGAGTGGAAGTAGTGTTTATAATTTAGCTTAATTTTCAAAAACAAAAAATCAAGTTTATAAAAACTACATCCACCTATAAGTTTTGTTATCCACTTTATACCAATATTTTAAAAAATCAAACCAAATAGTATGAAATTCTTGTTGTTTTTAAATTTTGACTAAAAATTCAAGTGTTTCTTCAGAAAGAAAGAAAGAAAAAAAAAAAAAAAAAACCATAGTATGTGTTGATGCAAAATATGAGTAGGGGAAACACACCTGACTCTCACGTGACATCATCATTTAAATTTTTAATTCAGGGAAGAGAGTACTTGCAAAACAAAGAAAAACGACTCTGATGCCTAAGTCAGTTAGAGAATTATAGAATAGGAAAGAAATCAGAAGTTTTAAGTTACTTTTAATGGAGTCATGATAATCTATTTTGTAGGGGATTTGACCTAGGGTTTTATTCTAACTCTACTGGGATTAGGATATGGGTTTCCTAATCCTTAGTAAGCTAGGATCAAATCTCATATTATTTTATATTATCTTATATTATCTCGATTTTTTACTTTATTCCATTAGGCTAAAATCCATTCCTCGAAGATATAAAATTTAAGAGAAAACAAGCCTATAAATTTAAAAAAAAAAAATAAAGAAGATAAAAAAACATAATGCTACCAAACGGAGCCAAAATTATTATTATTATGAAAGGAGACTAACAATTGTAGTATTCTGTATTTTGGTAGGTGGTTGTGAACTTTACAGCAGCATGGTGTGGCCCATGTCGTGCCATGGCTCCAATTCTTCAAGAGCTGTCGAAGAAAATGAGTAATGTTATATTCTTGAAAGTGGATATTGATGAACTCATGGTAAGTTAAAAAAATAAATAAATAAATAAATTATTCGATCATATGCTTTTGCAACCAGTGAAGTAATTTTGTTAAAATTGTGGTTTAGTTTTACAGAGTATTGCAAATGAGTATGGAGTAAGTTCCATTCCTTCATTTCAATTCATGAAGAATGGGAAGTTGGTGGACAAGTTCGTAGGTGCAAACAAAGATTTACTCCAAAACACTCTTTCCAAACATGTAGCCTAA ATGGGCAAAGTGGTTGTGAACTTTACAGCAGCATGGTGTGGCCCATGTCGTGCCATGGCTCCAATTCTTCAAGAGCTGTCGAAGAAAATGAGTAATGTTATATTCTTGAAAGTGGATATTGATGAACTCATGAGTATTGCAAATGAGTATGGAGTAAGTTCCATTCCTTCATTTCAATTCATGAAGAATGGGAAGTTGGTGGACAAGTTCGTAGGTGCAAACAAAGATTTACTCCAAAACACTCTTTCCAAACATGTAGCCTAA ATGGGCAAAGTGGTTGTGAACTTTACAGCAGCATGGTGTGGCCCATGTCGTGCCATGGCTCCAATTCTTCAAGAGCTGTCGAAGAAAATGAGTAATGTTATATTCTTGAAAGTGGATATTGATGAACTCATGAGTATTGCAAATGAGTATGGAGTAAGTTCCATTCCTTCATTTCAATTCATGAAGAATGGGAAGTTGGTGGACAAGTTCGTAGGTGCAAACAAAGATTTACTCCAAAACACTCTTTCCAAACATGTAGCCTAA MGKVVVNFTAAWCGPCRAMAPILQELSKKMSNVIFLKVDIDELMSIANEYGVSSIPSFQFMKNGKLVDKFVGANKDLLQNTLSKHVA Homology
BLAST of Lsi04G009290 vs. ExPASy Swiss-Prot
Match: Q43636 (Thioredoxin H-type OS=Ricinus communis OX=3988 PE=3 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 1.6e-26 Identity = 52/86 (60.47%), Postives = 71/86 (82.56%), Query Frame = 0
BLAST of Lsi04G009290 vs. ExPASy Swiss-Prot
Match: P29448 (Thioredoxin H1 OS=Arabidopsis thaliana OX=3702 GN=TRX1 PE=1 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 8.5e-25 Identity = 48/84 (57.14%), Postives = 70/84 (83.33%), Query Frame = 0
BLAST of Lsi04G009290 vs. ExPASy Swiss-Prot
Match: P29449 (Thioredoxin H-type 1 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 1.6e-23 Identity = 49/84 (58.33%), Postives = 69/84 (82.14%), Query Frame = 0
BLAST of Lsi04G009290 vs. ExPASy Swiss-Prot
Match: Q07090 (Thioredoxin H-type 2 OS=Nicotiana tabacum OX=4097 PE=3 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 1.6e-23 Identity = 47/84 (55.95%), Postives = 66/84 (78.57%), Query Frame = 0
BLAST of Lsi04G009290 vs. ExPASy Swiss-Prot
Match: Q0D840 (Thioredoxin H1 OS=Oryza sativa subsp. japonica OX=39947 GN=TRXH PE=1 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 3.0e-22 Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 0
BLAST of Lsi04G009290 vs. ExPASy TrEMBL
Match: A0A6J1CBX5 (thioredoxin H1-like OS=Momordica charantia OX=3673 GN=LOC111010155 PE=4 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32 Identity = 69/84 (82.14%), Postives = 77/84 (91.67%), Query Frame = 0
BLAST of Lsi04G009290 vs. ExPASy TrEMBL
Match: A0A0A0KLS7 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G190490 PE=4 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 7.5e-32 Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 0
BLAST of Lsi04G009290 vs. ExPASy TrEMBL
Match: A0A6J1CDG5 (thioredoxin H1-like OS=Momordica charantia OX=3673 GN=LOC111010214 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 9.7e-32 Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = 0
BLAST of Lsi04G009290 vs. ExPASy TrEMBL
Match: A0A5A7U8S0 (Thioredoxin H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G00820 PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31 Identity = 71/85 (83.53%), Postives = 80/85 (94.12%), Query Frame = 0
BLAST of Lsi04G009290 vs. ExPASy TrEMBL
Match: A0A1S3CMJ1 (thioredoxin H-type-like OS=Cucumis melo OX=3656 GN=LOC103502659 PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31 Identity = 71/85 (83.53%), Postives = 80/85 (94.12%), Query Frame = 0
BLAST of Lsi04G009290 vs. NCBI nr
Match: XP_038893093.1 (thioredoxin H1-like [Benincasa hispida]) HSP 1 Score: 148.3 bits (373), Expect = 3.1e-32 Identity = 71/84 (84.52%), Postives = 79/84 (94.05%), Query Frame = 0
BLAST of Lsi04G009290 vs. NCBI nr
Match: XP_022139186.1 (thioredoxin H1-like [Momordica charantia]) HSP 1 Score: 148.3 bits (373), Expect = 3.1e-32 Identity = 69/84 (82.14%), Postives = 77/84 (91.67%), Query Frame = 0
BLAST of Lsi04G009290 vs. NCBI nr
Match: XP_004149944.1 (thioredoxin H-type [Cucumis sativus]) HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31 Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 0
BLAST of Lsi04G009290 vs. NCBI nr
Match: KAE8648009.1 (hypothetical protein Csa_021401 [Cucumis sativus]) HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31 Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 0
BLAST of Lsi04G009290 vs. NCBI nr
Match: XP_022139257.1 (thioredoxin H1-like [Momordica charantia]) HSP 1 Score: 145.6 bits (366), Expect = 2.0e-31 Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = 0
BLAST of Lsi04G009290 vs. TAIR 10
Match: AT3G51030.1 (thioredoxin H-type 1 ) HSP 1 Score: 114.0 bits (284), Expect = 6.0e-26 Identity = 48/84 (57.14%), Postives = 70/84 (83.33%), Query Frame = 0
BLAST of Lsi04G009290 vs. TAIR 10
Match: AT1G19730.1 (Thioredoxin superfamily protein ) HSP 1 Score: 104.0 bits (258), Expect = 6.3e-23 Identity = 47/83 (56.63%), Postives = 66/83 (79.52%), Query Frame = 0
BLAST of Lsi04G009290 vs. TAIR 10
Match: AT1G45145.1 (thioredoxin H-type 5 ) HSP 1 Score: 101.7 bits (252), Expect = 3.1e-22 Identity = 40/82 (48.78%), Postives = 62/82 (75.61%), Query Frame = 0
BLAST of Lsi04G009290 vs. TAIR 10
Match: AT3G17880.1 (tetraticopeptide domain-containing thioredoxin ) HSP 1 Score: 90.5 bits (223), Expect = 7.2e-19 Identity = 38/82 (46.34%), Postives = 60/82 (73.17%), Query Frame = 0
BLAST of Lsi04G009290 vs. TAIR 10
Match: AT3G17880.2 (tetraticopeptide domain-containing thioredoxin ) HSP 1 Score: 90.5 bits (223), Expect = 7.2e-19 Identity = 38/82 (46.34%), Postives = 60/82 (73.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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