Lsi03G009570 (gene) Bottle gourd (USVL1VR-Ls) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTATACCTAGATACTTTATTCTATGGATAAAGGATTTAATTGATAGAAGAATTACCGTAAAGATCAATTAGTCAGGTTGTTGGCCAATACAATAAAAACTGCTTACTTATATCATGATATAAGATCAAAATGAAGGAATCCAATTATGTAATAGGGTGGATCCCCTACGATATTGAGTAGCGGTGTAGCATCAGATCCCAAAGACAGTAAGTCTTTTCTTTCTTATGAAGGAAAGTCTTTTTCAAGGATTCTATATAAATTTCTAGATGAAACCGAGATAGTTATCTTTCAGAAAATTGTAACGATAGTGGAATGCCTATGCTTTATTCTTCTGAAGGTGGGAGAAAAGATAAAACTTATTTAATTATTCAGCAAAATGAAAGTTTGAAACTTATATAATTAACCTCTTTTGCTTAACTCGAGAAAAAAAATGGGCTAGATCTATGAAAAATTTCATTCAATTAGATTAGATATGGTAAATTTTTTAAAATATGGGACAGCAAAAGAATTGACTGTTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACACGCTATAGCACTTACTCCCGATAATTAG ATGGATATGGTAAATTTTTTAAAATATGGGACAGCAAAAGAATTGACTGTTGAGCCGTATGAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACACGCTATAGCACTTACTCCCGATAATTAG ATGGATATGGTAAATTTTTTAAAATATGGGACAGCAAAAGAATTGACTGTTGAGCCGTATGAGGAAACTCTCAAGTACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACACGCTATAGCACTTACTCCCGATAATTAG MDMVNFLKYGTAKELTVEPYEETLKYGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKHAIALTPDN Homology
BLAST of Lsi03G009570 vs. ExPASy Swiss-Prot
Match: Q4VZH4 (Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 4.1e-12 Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = 0
BLAST of Lsi03G009570 vs. ExPASy Swiss-Prot
Match: Q09MH7 (Photosystem I assembly protein Ycf3 OS=Citrus sinensis OX=2711 GN=ycf3 PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 5.3e-12 Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0
BLAST of Lsi03G009570 vs. ExPASy Swiss-Prot
Match: A4GG96 (Photosystem I assembly protein Ycf3 OS=Phaseolus vulgaris OX=3885 GN=ycf3 PE=3 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 1.2e-11 Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0
BLAST of Lsi03G009570 vs. ExPASy Swiss-Prot
Match: Q2PMU4 (Photosystem I assembly protein Ycf3 OS=Glycine max OX=3847 GN=ycf3 PE=3 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 1.2e-11 Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0
BLAST of Lsi03G009570 vs. ExPASy Swiss-Prot
Match: A8SEA4 (Photosystem I assembly protein Ycf3 OS=Ceratophyllum demersum OX=4428 GN=ycf3 PE=3 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 1.5e-11 Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0
BLAST of Lsi03G009570 vs. ExPASy TrEMBL
Match: A0A4U5Q996 (30S ribosomal protein S4, chloroplastic OS=Populus alba OX=43335 GN=rps4 PE=3 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 2.3e-18 Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0
BLAST of Lsi03G009570 vs. ExPASy TrEMBL
Match: W1P7C5 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00334p00015220 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 3.9e-18 Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0
BLAST of Lsi03G009570 vs. ExPASy TrEMBL
Match: A0A7J6HQR9 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027372 PE=4 SV=1) HSP 1 Score: 100.1 bits (248), Expect = 3.9e-18 Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0
BLAST of Lsi03G009570 vs. ExPASy TrEMBL
Match: A0A444XLF1 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B09g096572 PE=4 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 5.1e-18 Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0
BLAST of Lsi03G009570 vs. ExPASy TrEMBL
Match: A0A445C631 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A07g032141 PE=4 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 6.7e-18 Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0
BLAST of Lsi03G009570 vs. NCBI nr
Match: KAE8652973.1 (hypothetical protein Csa_021105 [Cucumis sativus]) HSP 1 Score: 105.5 bits (262), Expect = 1.9e-19 Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0
BLAST of Lsi03G009570 vs. NCBI nr
Match: TKS04885.1 (ribosomal protein S4 [Populus alba]) HSP 1 Score: 100.9 bits (250), Expect = 4.8e-18 Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0
BLAST of Lsi03G009570 vs. NCBI nr
Match: KAG6735386.1 (hypothetical protein POTOM_062012 [Populus tomentosa]) HSP 1 Score: 100.9 bits (250), Expect = 4.8e-18 Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0
BLAST of Lsi03G009570 vs. NCBI nr
Match: ERN02875.1 (hypothetical protein AMTR_s00334p00015220 [Amborella trichopoda] >KAF4397632.1 hypothetical protein G4B88_027372 [Cannabis sativa]) HSP 1 Score: 100.1 bits (248), Expect = 8.1e-18 Identity = 47/52 (90.38%), Postives = 49/52 (94.23%), Query Frame = 0
BLAST of Lsi03G009570 vs. NCBI nr
Match: RYQ90503.1 (hypothetical protein Ahy_B09g096572 isoform E [Arachis hypogaea]) HSP 1 Score: 99.8 bits (247), Expect = 1.1e-17 Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0
BLAST of Lsi03G009570 vs. TAIR 10
Match: ATCG00360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 64.3 bits (155), Expect = 4.6e-11 Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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