Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAATTCTTCCGATCCTGCAATCTGCTCTATAGCTTTCCCAATCTCCGTTGATCTCTTCCTATTCAGAAAACATCCCGACTACGTAACTAATTCCTTCGGTGACATCGTTTATAGGCTCAGTCGTCGATCTTTGAAATCGTTGTCAGTTGACAAGATTGTACTACTTGACGCTGCTGTCAGCCCTCTCATTTCCATTTATCGCGTTAACGTAAGTATTCACCCTACTTTTGTTCATCGTCTCCTGTGTTAGTTTCAAGATTCAGTGTAATAGCTTTGTTTAGTATCCTGTTGTGAACTAGTTTTTTTCTTTCCTCTTCATGTTTGCTTGCAAGTTCCTAATCATGTGAAGAGCAAGTTCGTTGCCTCCAATTTTCAGAAGCTGAGTGTTTTTGATTAATTTTGTTGCGATCGTATGATCAAAAAGTTAGGAAAGGTAGATTCAACATGTTAGAATAACCCACATTTTTCTTTTCTACTTCGCCTTCAGGAATTAGATCCATTACTTTAATACGAAATAATTAGAGAATTCCAGCTCGTATCCACCAAAGAATTAGCAAAGTTTTCCTCCTTCTGTATGGGGAAGGAGAGTTTTAATATTGTATGACCTAAATGATTTTGGTGTTTCCTATTTCTAGCTTGCAAAATGATCTAGAATTTTAGTATCGACCATTTTTTCACAGTTTTTGTCTGTTATGTGCCTTCTAGTTGTTTGTGATTTTAGAATTGTGATTGTTGGGATTTGTTAAAATTCCTTCACATTGGTCACTACATTCCAAATGAACCATCCCTATAA
mRNA sequence
ATGGCTAATTCTTCCGATCCTGCAATCTGCTCTATAGCTTTCCCAATCTCCGTTGATCTCTTCCTATTCAGAAAACATCCCGACTACGTAACTAATTCCTTCGGTGACATCGTTTATAGGCTCAGTCGTCGATCTTTGAAATCGTTGTCAGTTGACAAGATTGTACTACTTGACGCTGCTGTCAGCCCTCTCATTTCCATTTATCGCGTTAACAATTGTGATTGTTGGGATTTGTTAAAATTCCTTCACATTGGTCACTACATTCCAAATGAACCATCCCTATAA
Coding sequence (CDS)
ATGGCTAATTCTTCCGATCCTGCAATCTGCTCTATAGCTTTCCCAATCTCCGTTGATCTCTTCCTATTCAGAAAACATCCCGACTACGTAACTAATTCCTTCGGTGACATCGTTTATAGGCTCAGTCGTCGATCTTTGAAATCGTTGTCAGTTGACAAGATTGTACTACTTGACGCTGCTGTCAGCCCTCTCATTTCCATTTATCGCGTTAACAATTGTGATTGTTGGGATTTGTTAAAATTCCTTCACATTGGTCACTACATTCCAAATGAACCATCCCTATAA
Protein sequence
MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDAAVSPLISIYRVNNCDCWDLLKFLHIGHYIPNEPSL
Homology
BLAST of Lsi02G012180 vs. ExPASy TrEMBL
Match:
A0A6J1G943 (protein LURP-one-related 7 OS=Cucurbita moschata OX=3662 GN=LOC111452060 PE=3 SV=1)
HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 0
Query: 1 MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDAA 60
MANSSDPAIC+ + PI VDLFL +KHPD+VT S GD ++RLSR+SLKS S+DKIVL DAA
Sbjct: 1 MANSSDPAICAASLPIPVDLFLSKKHPDHVTTSSGDFIFRLSRQSLKSSSIDKIVLHDAA 60
Query: 61 VS--PLISIYRVNNCDCWDLLK 81
+ PLISI+RVN + W K
Sbjct: 61 AAAGPLISIHRVNK-ESWQGFK 81
BLAST of Lsi02G012180 vs. ExPASy TrEMBL
Match:
A0A0A0K429 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238420 PE=3 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 8.7e-18
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 0
Query: 1 MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDA- 60
MAN SDPAICS A PI +DLFL ++HPDY+TNS GDI+YR++R +LKS SVDKI+L A
Sbjct: 1 MANPSDPAICSPALPIPIDLFLSKQHPDYLTNSSGDIIYRINRHALKSSSVDKILLPHAD 60
Query: 61 AVSPLISIYRVNNCDCWDLLK 81
A PLISI+RVN + W+ K
Sbjct: 61 AADPLISIFRVNK-ESWEGFK 80
BLAST of Lsi02G012180 vs. ExPASy TrEMBL
Match:
A0A6J1KES0 (protein LURP-one-related 7 OS=Cucurbita maxima OX=3661 GN=LOC111493191 PE=3 SV=1)
HSP 1 Score: 97.4 bits (241), Expect = 3.3e-17
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 0
Query: 1 MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDAA 60
MA SSDPAIC+ PI VDLFL +KHPD+VT+S GDI++RLSR+ LKS S+DKIVL DAA
Sbjct: 1 MAKSSDPAICAAPLPIPVDLFLSKKHPDHVTSSSGDIIFRLSRQYLKSSSIDKIVLHDAA 60
Query: 61 VS---PLISIYRVNNCDCWDLLK 81
+ PLISI+RVN + W K
Sbjct: 61 AAAAGPLISIHRVNK-ESWQGFK 82
BLAST of Lsi02G012180 vs. ExPASy TrEMBL
Match:
A0A5A7T6Q3 (Protein LURP-one-related 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00070 PE=3 SV=1)
HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0
Query: 1 MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDA- 60
MANSSDP ICS A PI +DLFL ++HP Y+TNS GDI+Y+++R + KS SVDKI+L A
Sbjct: 1 MANSSDPTICSAALPIPIDLFLSKEHPHYLTNSSGDIIYKINRHAFKSSSVDKILLPHAD 60
Query: 61 AVSPLISIYRVNNCDCWDLLK 81
A PLISI+RVN + W+ K
Sbjct: 61 AADPLISIFRVNK-ESWEGFK 80
BLAST of Lsi02G012180 vs. ExPASy TrEMBL
Match:
A0A1S3CIB3 (protein LURP-one-related 7 OS=Cucumis melo OX=3656 GN=LOC103501291 PE=3 SV=1)
HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = 0
Query: 1 MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDA- 60
MANSSDP ICS A PI +DLFL ++HP Y+TNS GDI+Y+++R + KS SVDKI+L A
Sbjct: 1 MANSSDPTICSAALPIPIDLFLSKEHPHYLTNSSGDIIYKINRHAFKSSSVDKILLPHAD 60
Query: 61 AVSPLISIYRVNNCDCWDLLK 81
A PLISI+RVN + W+ K
Sbjct: 61 AADPLISIFRVNK-ESWEGFK 80
BLAST of Lsi02G012180 vs. NCBI nr
Match:
XP_038884438.1 (protein LURP-one-related 7 [Benincasa hispida])
HSP 1 Score: 109.8 bits (273), Expect = 1.3e-20
Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = 0
Query: 1 MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDAA 60
MANSSDPAICS A PI+VDLFL ++HPDY+TNS GDI+YR++R SLKS SVDKIVLLDAA
Sbjct: 1 MANSSDPAICSAALPIAVDLFLSKEHPDYLTNSSGDIIYRINRPSLKSSSVDKIVLLDAA 60
Query: 61 VS-PLISIYRVNNCDCWDLLK 81
+ PLISI+RVN + W K
Sbjct: 61 AADPLISIFRVNK-ESWQGFK 80
BLAST of Lsi02G012180 vs. NCBI nr
Match:
KAG6607355.1 (Protein LURP-one-related 7, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 102.4 bits (254), Expect = 2.1e-18
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 0
Query: 1 MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDAA 60
MANSSDPAIC+ PI VDLFL +KHPD+VT S GDI++RLSR+SLKS S+DKIVL DAA
Sbjct: 1 MANSSDPAICAAPLPIPVDLFLSKKHPDHVTTSSGDIIFRLSRQSLKSSSIDKIVLHDAA 60
Query: 61 VS-PLISIYRVNNCDCWDLLK 81
+ PLISI+RVN + W K
Sbjct: 61 AAGPLISIHRVNK-ESWQGFK 80
BLAST of Lsi02G012180 vs. NCBI nr
Match:
XP_022948358.1 (protein LURP-one-related 7 [Cucurbita moschata])
HSP 1 Score: 101.3 bits (251), Expect = 4.7e-18
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 0
Query: 1 MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDAA 60
MANSSDPAIC+ + PI VDLFL +KHPD+VT S GD ++RLSR+SLKS S+DKIVL DAA
Sbjct: 1 MANSSDPAICAASLPIPVDLFLSKKHPDHVTTSSGDFIFRLSRQSLKSSSIDKIVLHDAA 60
Query: 61 VS--PLISIYRVNNCDCWDLLK 81
+ PLISI+RVN + W K
Sbjct: 61 AAAGPLISIHRVNK-ESWQGFK 81
BLAST of Lsi02G012180 vs. NCBI nr
Match:
XP_023523465.1 (protein LURP-one-related 7 isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 99.4 bits (246), Expect = 1.8e-17
Identity = 53/84 (63.10%), Postives = 64/84 (76.19%), Query Frame = 0
Query: 1 MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDAA 60
MANSSDPAIC+ PI VDLFL +KHPD+VT S G+I++RLSR+SLKS S+DKIVL DAA
Sbjct: 1 MANSSDPAICAAPLPIPVDLFLSKKHPDHVTTSSGNIIFRLSRQSLKSSSIDKIVLHDAA 60
Query: 61 VS----PLISIYRVNNCDCWDLLK 81
+ PLISI+RVN + W K
Sbjct: 61 AAAAAGPLISIHRVNK-ESWQGFK 83
BLAST of Lsi02G012180 vs. NCBI nr
Match:
XP_004139831.1 (protein LURP-one-related 7 [Cucumis sativus] >KGN44278.1 hypothetical protein Csa_016427 [Cucumis sativus])
HSP 1 Score: 99.4 bits (246), Expect = 1.8e-17
Identity = 51/81 (62.96%), Postives = 63/81 (77.78%), Query Frame = 0
Query: 1 MANSSDPAICSIAFPISVDLFLFRKHPDYVTNSFGDIVYRLSRRSLKSLSVDKIVLLDA- 60
MAN SDPAICS A PI +DLFL ++HPDY+TNS GDI+YR++R +LKS SVDKI+L A
Sbjct: 1 MANPSDPAICSPALPIPIDLFLSKQHPDYLTNSSGDIIYRINRHALKSSSVDKILLPHAD 60
Query: 61 AVSPLISIYRVNNCDCWDLLK 81
A PLISI+RVN + W+ K
Sbjct: 61 AADPLISIFRVNK-ESWEGFK 80
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1G943 | 2.3e-18 | 64.63 | protein LURP-one-related 7 OS=Cucurbita moschata OX=3662 GN=LOC111452060 PE=3 SV... | [more] |
A0A0A0K429 | 8.7e-18 | 62.96 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G238420 PE=3 SV=1 | [more] |
A0A6J1KES0 | 3.3e-17 | 62.65 | protein LURP-one-related 7 OS=Cucurbita maxima OX=3661 GN=LOC111493191 PE=3 SV=1 | [more] |
A0A5A7T6Q3 | 1.6e-16 | 59.26 | Protein LURP-one-related 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
A0A1S3CIB3 | 1.6e-16 | 59.26 | protein LURP-one-related 7 OS=Cucumis melo OX=3656 GN=LOC103501291 PE=3 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_038884438.1 | 1.3e-20 | 70.37 | protein LURP-one-related 7 [Benincasa hispida] | [more] |
KAG6607355.1 | 2.1e-18 | 66.67 | Protein LURP-one-related 7, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_022948358.1 | 4.7e-18 | 64.63 | protein LURP-one-related 7 [Cucurbita moschata] | [more] |
XP_023523465.1 | 1.8e-17 | 63.10 | protein LURP-one-related 7 isoform X2 [Cucurbita pepo subsp. pepo] | [more] |
XP_004139831.1 | 1.8e-17 | 62.96 | protein LURP-one-related 7 [Cucumis sativus] >KGN44278.1 hypothetical protein Cs... | [more] |
Match Name | E-value | Identity | Description | |