Lsi01G017550 (gene) Bottle gourd (USVL1VR-Ls) v1

Overview


Name	Lsi01G017550
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls) v1)
Description	hydroxyproline-rich glycoprotein family protein
Location	chr01: 16339418 .. 16339678 (+)
RNA-Seq Expression	Lsi01G017550
Synteny	Lsi01G017550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAAAACGACGGAGAACAGCCACTGCCGTCCGCCATCGGCTACAGGCCATCTGGCCAGGCTGCCGATGGCCGATGCTGTTGTGGGTGTGTTTCGATTCCAAGACTCATTGGCTTCAGATGCATCTTCATTCTGCTATTGTCCGTTGCCTTGTTCGTTTCTGCTGTTTTTTGGTTGCCCCCTTTTCTCCATTATGCAGATCAAAAGGATCTGGGTCTCAATTCGTCGTATCGAGGTGGGACTCTTCATCGATTCTGA

mRNA sequence

ATGGGGAAAAACGACGGAGAACAGCCACTGCCGTCCGCCATCGGCTACAGGCCATCTGGCCAGGCTGCCGATGGCCGATGCTGTTGTGGGTGTGTTTCGATTCCAAGACTCATTGGCTTCAGATGCATCTTCATTCTGCTATTGTCCGTTGCCTTGTTCGTTTCTGCTGTTTTTTGGTTGCCCCCTTTTCTCCATTATGCAGATCAAAAGGATCTGGGTCTCAATTCGTCGTATCGAGGTGGGACTCTTCATCGATTCTGA

Coding sequence (CDS)

ATGGGGAAAAACGACGGAGAACAGCCACTGCCGTCCGCCATCGGCTACAGGCCATCTGGCCAGGCTGCCGATGGCCGATGCTGTTGTGGGTGTGTTTCGATTCCAAGACTCATTGGCTTCAGATGCATCTTCATTCTGCTATTGTCCGTTGCCTTGTTCGTTTCTGCTGTTTTTTGGTTGCCCCCTTTTCTCCATTATGCAGATCAAAAGGATCTGGGTCTCAATTCGTCGTATCGAGGTGGGACTCTTCATCGATTCTGA

Protein sequence

MGKNDGEQPLPSAIGYRPSGQAADGRCCCGCVSIPRLIGFRCIFILLLSVALFVSAVFWLPPFLHYADQKDLGLNSSYRGGTLHRF

Homology

[Close]

BLAST of Lsi01G017550 vs. ExPASy TrEMBL
Match: A0A5D3CGZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00450 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.5e-35
Identity = 76/86 (88.37%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MGKNDGEQPLPSAIGYRPSGQAADGRCCCGCVSIPRLIGFRCIFILLLSVALFVSAVFWL 60
          MGKNDGEQPLPSAI  RPSG  ADGRCC GCVSI RLIGFRCIFILLLSVALFVSAV WL
Sbjct: 1  MGKNDGEQPLPSAIDSRPSGLVADGRCCRGCVSIRRLIGFRCIFILLLSVALFVSAVVWL 60

Query: 61 PPFLHYADQKDLGLNSSYRGGTLHRF 87
          PPF+HYADQKDLGLN SYRGG LHRF
Sbjct: 61 PPFIHYADQKDLGLNPSYRGGILHRF 86

[Close]

BLAST of Lsi01G017550 vs. ExPASy TrEMBL
Match: A0A0A0KYS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420140 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.0e-33
Identity = 73/80 (91.25%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MGKNDGEQPLPSAIGYRPSGQAADGRCCCGCVSIPRLIGFRCIFILLLSVALFVSAVFWL 60
          MGKNDGEQPLPSAI  RPSG  ADGRCCCGCVSI RLIGFRCIFILLLSVALFVSAVFWL
Sbjct: 1  MGKNDGEQPLPSAIDSRPSGLVADGRCCCGCVSIRRLIGFRCIFILLLSVALFVSAVFWL 60

Query: 61 PPFLHYADQKDLGLNSSYRG 81
          PPFLHYADQKDL LN SYRG
Sbjct: 61 PPFLHYADQKDLDLNPSYRG 80

[Close]

BLAST of Lsi01G017550 vs. ExPASy TrEMBL
Match: A0A1S3C173 (uncharacterized protein LOC103495852 OS=Cucumis melo OX=3656 GN=LOC103495852 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 71/80 (88.75%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MGKNDGEQPLPSAIGYRPSGQAADGRCCCGCVSIPRLIGFRCIFILLLSVALFVSAVFWL 60
          MGKNDGEQPLPSAI  RPSG  ADGRCC GCVSI RLIGFRCIFILLLSVALFVSAV WL
Sbjct: 1  MGKNDGEQPLPSAIDSRPSGLVADGRCCRGCVSIRRLIGFRCIFILLLSVALFVSAVVWL 60

Query: 61 PPFLHYADQKDLGLNSSYRG 81
          PPF+HYADQKDLGLN SYRG
Sbjct: 61 PPFIHYADQKDLGLNPSYRG 80

[Close]

BLAST of Lsi01G017550 vs. ExPASy TrEMBL
Match: A0A6J1HW39 (uncharacterized protein LOC111467196 OS=Cucurbita maxima OX=3661 GN=LOC111467196 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.0e-30
Identity = 68/80 (85.00%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1  MGKNDGEQPLPSAIGYRPSGQAADGRCCCGCVSIPRLIGFRCIFILLLSVALFVSAVFWL 60
          MGKNDGEQP  SA+G RPSGQA+DGR CCGCVSI  LIGFRCIFILLLSVALFVSAVFWL
Sbjct: 1  MGKNDGEQPPQSAVGSRPSGQASDGRFCCGCVSIRSLIGFRCIFILLLSVALFVSAVFWL 60

Query: 61 PPFLHYADQKDLGLNSSYRG 81
          PPFLHYADQKD  L S YRG
Sbjct: 61 PPFLHYADQKDPSLKSPYRG 80

[Close]

BLAST of Lsi01G017550 vs. ExPASy TrEMBL
Match: A0A6J1GGI3 (uncharacterized protein LOC111453729 OS=Cucurbita moschata OX=3662 GN=LOC111453729 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.8e-29
Identity = 68/80 (85.00%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1  MGKNDGEQPLPSAIGYRPSGQAADGRCCCGCVSIPRLIGFRCIFILLLSVALFVSAVFWL 60
          MGKNDGEQP  SA+G RPSGQA+DGR CCGCVSI  LIGFRCIFILLLSVALFVSAVF L
Sbjct: 1  MGKNDGEQPPQSAVGSRPSGQASDGRFCCGCVSIRSLIGFRCIFILLLSVALFVSAVFGL 60

Query: 61 PPFLHYADQKDLGLNSSYRG 81
          PPFLHYADQKDLG  S YRG
Sbjct: 61 PPFLHYADQKDLGHKSPYRG 80

[Close]

BLAST of Lsi01G017550 vs. NCBI nr
Match: TYK09646.1 (uncharacterized protein E5676_scaffold447G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 76/86 (88.37%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MGKNDGEQPLPSAIGYRPSGQAADGRCCCGCVSIPRLIGFRCIFILLLSVALFVSAVFWL 60
          MGKNDGEQPLPSAI  RPSG  ADGRCC GCVSI RLIGFRCIFILLLSVALFVSAV WL
Sbjct: 1  MGKNDGEQPLPSAIDSRPSGLVADGRCCRGCVSIRRLIGFRCIFILLLSVALFVSAVVWL 60

Query: 61 PPFLHYADQKDLGLNSSYRGGTLHRF 87
          PPF+HYADQKDLGLN SYRGG LHRF
Sbjct: 61 PPFIHYADQKDLGLNPSYRGGILHRF 86

[Close]

BLAST of Lsi01G017550 vs. NCBI nr
Match: XP_038882638.1 (uncharacterized protein LOC120073837 [Benincasa hispida])

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-34
Identity = 75/80 (93.75%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 1  MGKNDGEQPLPSAIGYRPSGQAADGRCCCGCVSIPRLIGFRCIFILLLSVALFVSAVFWL 60
          MGKNDGEQPLPSAI  RPSGQ ADGRCCCGCVSI RLIGFRCIFILLLSVALFVSAVFWL
Sbjct: 1  MGKNDGEQPLPSAIDSRPSGQVADGRCCCGCVSIRRLIGFRCIFILLLSVALFVSAVFWL 60

Query: 61 PPFLHYADQKDLGLNSSYRG 81
          PPFLHYADQKDLGLN SYRG
Sbjct: 61 PPFLHYADQKDLGLNPSYRG 80

[Close]

BLAST of Lsi01G017550 vs. NCBI nr
Match: KGN54878.2 (hypothetical protein Csa_012907 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 6.2e-33
Identity = 73/80 (91.25%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MGKNDGEQPLPSAIGYRPSGQAADGRCCCGCVSIPRLIGFRCIFILLLSVALFVSAVFWL 60
          MGKNDGEQPLPSAI  RPSG  ADGRCCCGCVSI RLIGFRCIFILLLSVALFVSAVFWL
Sbjct: 1  MGKNDGEQPLPSAIDSRPSGLVADGRCCCGCVSIRRLIGFRCIFILLLSVALFVSAVFWL 60

Query: 61 PPFLHYADQKDLGLNSSYRG 81
          PPFLHYADQKDL LN SYRG
Sbjct: 61 PPFLHYADQKDLDLNPSYRG 80

[Close]

BLAST of Lsi01G017550 vs. NCBI nr
Match: XP_004144318.1 (uncharacterized protein LOC101216010 isoform X1 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 6.2e-33
Identity = 73/80 (91.25%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MGKNDGEQPLPSAIGYRPSGQAADGRCCCGCVSIPRLIGFRCIFILLLSVALFVSAVFWL 60
          MGKNDGEQPLPSAI  RPSG  ADGRCCCGCVSI RLIGFRCIFILLLSVALFVSAVFWL
Sbjct: 1  MGKNDGEQPLPSAIDSRPSGLVADGRCCCGCVSIRRLIGFRCIFILLLSVALFVSAVFWL 60

Query: 61 PPFLHYADQKDLGLNSSYRG 81
          PPFLHYADQKDL LN SYRG
Sbjct: 61 PPFLHYADQKDLDLNPSYRG 80

[Close]

BLAST of Lsi01G017550 vs. NCBI nr
Match: XP_031740216.1 (uncharacterized protein LOC101216010 isoform X2 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 6.2e-33
Identity = 73/80 (91.25%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MGKNDGEQPLPSAIGYRPSGQAADGRCCCGCVSIPRLIGFRCIFILLLSVALFVSAVFWL 60
          MGKNDGEQPLPSAI  RPSG  ADGRCCCGCVSI RLIGFRCIFILLLSVALFVSAVFWL
Sbjct: 1  MGKNDGEQPLPSAIDSRPSGLVADGRCCCGCVSIRRLIGFRCIFILLLSVALFVSAVFWL 60

Query: 61 PPFLHYADQKDLGLNSSYRG 81
          PPFLHYADQKDL LN SYRG
Sbjct: 61 PPFLHYADQKDLDLNPSYRG 80

[Close]

BLAST of Lsi01G017550 vs. TAIR 10
Match: AT3G56590.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 61.2 bits (147), Expect = 4.6e-10
Identity = 37/83 (44.58%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 1  MGKND-GEQPLP---SAIGYRPSGQAADGRCCCGCVSIPRLIGFRCIFILLLSVALFVSA 60
          MGKN   EQ LP    A   R +G      CCC C  I      RC+ IL  S A+F+SA
Sbjct: 1  MGKNTVEEQNLPVSDGAASARNNGGGGISTCCC-CDWISSYFSLRCVLILAFSAAVFLSA 60

Query: 61 VFWLPPFLHYADQKDLGLNSSYR 80
          +FWLPPFL +AD  DL L+  ++
Sbjct: 61 LFWLPPFLGFADPGDLDLDPRFK 82

[Close]

BLAST of Lsi01G017550 vs. TAIR 10
Match: AT3G56590.2 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 61.2 bits (147), Expect = 4.6e-10
Identity = 37/83 (44.58%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 1  MGKND-GEQPLP---SAIGYRPSGQAADGRCCCGCVSIPRLIGFRCIFILLLSVALFVSA 60
          MGKN   EQ LP    A   R +G      CCC C  I      RC+ IL  S A+F+SA
Sbjct: 1  MGKNTVEEQNLPVSDGAASARNNGGGGISTCCC-CDWISSYFSLRCVLILAFSAAVFLSA 60

Query: 61 VFWLPPFLHYADQKDLGLNSSYR 80
          +FWLPPFL +AD  DL L+  ++
Sbjct: 61 LFWLPPFLGFADPGDLDLDPRFK 82

[Close]

BLAST of Lsi01G017550 vs. TAIR 10
Match: AT3G10810.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 1  MGKNDGEQPLPSAIGYRPSGQAADGRCCCGCVS-IPRLIGFRCIFILLLSVALFVSAVFW 60
          MGK + +  L  A G   +G +      CGC   I   +GF+C+F+LLLSVALF+SA+F 
Sbjct: 1  MGKTEDDVSLRVA-GGEATGDSTVRNARCGCCKWISSFVGFKCLFVLLLSVALFLSALFL 60

Query: 61 LPPFLHYADQKDLGLNSSYRG 81
          L PF    D++D  L+  +RG
Sbjct: 61 LLPF--PMDREDSNLDPRFRG 78

The following BLAST results are available for this feature:

BLAST of Lsi01G017550 vs.


Match Name	E-value	Identity	Description

BLAST of Lsi01G017550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGZ9	5.5e-35	88.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KYS3	3.0e-33	91.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420140 PE=4 SV=1	[more]
A0A1S3C173	1.3e-31	88.75	uncharacterized protein LOC103495852 OS=Cucumis melo OX=3656 GN=LOC103495852 PE=...	[more]
A0A6J1HW39	9.0e-30	85.00	uncharacterized protein LOC111467196 OS=Cucurbita maxima OX=3661 GN=LOC111467196...	[more]
A0A6J1GGI3	5.8e-29	85.00	uncharacterized protein LOC111453729 OS=Cucurbita moschata OX=3662 GN=LOC1114537...	[more]

BLAST of Lsi01G017550 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09646.1	1.1e-34	88.37	uncharacterized protein E5676_scaffold447G00450 [Cucumis melo var. makuwa]	[more]
XP_038882638.1	1.5e-34	93.75	uncharacterized protein LOC120073837 [Benincasa hispida]	[more]
KGN54878.2	6.2e-33	91.25	hypothetical protein Csa_012907 [Cucumis sativus]	[more]
XP_004144318.1	6.2e-33	91.25	uncharacterized protein LOC101216010 isoform X1 [Cucumis sativus]	[more]
XP_031740216.1	6.2e-33	91.25	uncharacterized protein LOC101216010 isoform X2 [Cucumis sativus]	[more]

BLAST of Lsi01G017550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56590.1	4.6e-10	44.58	hydroxyproline-rich glycoprotein family protein	[more]
AT3G56590.2	4.6e-10	44.58	hydroxyproline-rich glycoprotein family protein	[more]
AT3G10810.1	1.3e-07	41.98	zinc finger (C3HC4-type RING finger) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (USVL1VR-Ls) v1
Date Performed: 2021-10-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR33826	F20B24.21	coord: 1..80
None	No IPR available	PANTHER	PTHR33826:SF2	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G017550.1	Lsi01G017550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004175	endopeptidase activity
molecular_function	GO:0008236	serine-type peptidase activity