Sed0006924 (gene) Chayote v1

Overview


Name	Sed0006924
Type	gene
Organism	Sechium edule (Chayote v1)
Description	GATA transcription factor
Location	LG12: 4844459 .. 4845910 (+)
RNA-Seq Expression	Sed0006924
Synteny	Sed0006924

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGCACATTTCTGTCGGTTCGATTCTTAATTTGATCCTTTTATCTCTCTCTCTGTTCTGTTCTGTTCTAACCCTCAAATTTTTTCCCTCAATCTTCCCTTTTCCCTCTTGATTTTGAACTCTCAATCTTTCTCTCTTCACTCCCATTGTTTCTTCTTTCTTCATCCTCATCGCTTTCGCCATTGATTTCCCTTTTCTGGGTTTGATTCGTTTCTTCTCAGTTCGGCTTCTCTTCTCAGATCTCTCGCCTCCCCTGTTTCCGATCGAGGGTTTTGCGAGATACCCTTGATTTGTTTCTGCTGCTTCTGATCGTTTCATTCACTTCCCATTTCGGGTTTTGCGGTTTTGAAATCTGGGTTTCTCTTAGATCTCTCGAATAGTGATCAGATGACGATGGATCCGAGTGACAGAGTGAGTGTTCGCCCCTGTTTTTGTTCTGTTTTTTTAGAGATTTCTGTTTGGGTTCTGATCGGCGGTTTTGATTTTGCAGGGATCGGAATCGGAGGACATCTCTGGCAAGATCTCCGGCGGGGTTTCGTCGGAGGAGAGTCAAGTCAACGAGCAGAACAAGAAGACCTGTGCTGACTGCGGCACTTCGAAAACCCCTTTGTGGAGAGGCGGACCGGCCGGTCCAAAGGTAATTTCATTTGATTGATCTGAATGTTCATAGAGTTGTGGAGCTTTTTTGTGATCCAAATCTATGATTTTGAACAGTCTCTTTGCAATGCTTGTGGGATTAGAAGTAGGAAGAAGAGGAGGGCAATTTTGGGATTAAGTAAAGGAGTTGTTGAGGATAAGAAGAACAAAAGAAGCAATACTATTAGCAATAGTAGTAAGTTGAGAGATTCTTTGAAACAGAGGCTTTTGGATTTAGGAAGAGAAGTTTTGATGCAAAGATCTACTGTGGAGAGGCAAAGGAAGAAGAAATTGGGAGAAGAAGAACAAGCTGCTGTGTTGTTAATGGCTCTTTCATATGGCTCTGTTTATGCTTAAGATCAGCCATTGATGAAGATCATGAAGAGAAATAAGAACAAAAAAAGGGTGTTTCTTAAGCAGAAACAAGCCAAATCTGACCTAGAAATGTATCTTTTTTCCATCCATTTTGTTATATGTTTCCCCTAATATTGAGTGAAATTCTCTTAGTTCTTTATTGTTCTTTCTCCTCCCCTTTAGATCTCTGTTGATCTCCCTTTTTTGTTGTATTAACTAACCATTGTTTTTTGGATCTTGGAGAGTAATATGAGTAATGTAGTTGTGTTGATGAGTTGGATAATGAATTTTGTTGATGATTCTTGTCTTTTTATCTCAATAATGATTATGTAAAAAACCCCTTTCTAATCTACCTTTGTTTCAACTTTGTTAATTAGACATTTGTGACCATTTATGGGAACATTTTTTTACAGATTTAGTGTTTGTTAATTTGTAAGTCACATTGATCAGCATCTCAAATCAC

mRNA sequence

CTGCACATTTCTGTCGGTTCGATTCTTAATTTGATCCTTTTATCTCTCTCTCTGTTCTGTTCTGTTCTAACCCTCAAATTTTTTCCCTCAATCTTCCCTTTTCCCTCTTGATTTTGAACTCTCAATCTTTCTCTCTTCACTCCCATTGTTTCTTCTTTCTTCATCCTCATCGCTTTCGCCATTGATTTCCCTTTTCTGGGTTTGATTCGTTTCTTCTCAGTTCGGCTTCTCTTCTCAGATCTCTCGCCTCCCCTGTTTCCGATCGAGGGTTTTGCGAGATACCCTTGATTTGTTTCTGCTGCTTCTGATCGTTTCATTCACTTCCCATTTCGGGTTTTGCGGTTTTGAAATCTGGGTTTCTCTTAGATCTCTCGAATAGTGATCAGATGACGATGGATCCGAGTGACAGAGGATCGGAATCGGAGGACATCTCTGGCAAGATCTCCGGCGGGGTTTCGTCGGAGGAGAGTCAAGTCAACGAGCAGAACAAGAAGACCTGTGCTGACTGCGGCACTTCGAAAACCCCTTTGTGGAGAGGCGGACCGGCCGGTCCAAAGTCTCTTTGCAATGCTTGTGGGATTAGAAGTAGGAAGAAGAGGAGGGCAATTTTGGGATTAAGTAAAGGAGTTGTTGAGGATAAGAAGAACAAAAGAAGCAATACTATTAGCAATAGTAGTAAGTTGAGAGATTCTTTGAAACAGAGGCTTTTGGATTTAGGAAGAGAAGTTTTGATGCAAAGATCTACTGTGGAGAGGCAAAGGAAGAAGAAATTGGGAGAAGAAGAACAAGCTGCTGTGTTGTTAATGGCTCTTTCATATGGCTCTGTTTATGCTTAAGATCAGCCATTGATGAAGATCATGAAGAGAAATAAGAACAAAAAAAGGGTGTTTCTTAAGCAGAAACAAGCCAAATCTGACCTAGAAATGTATCTTTTTTCCATCCATTTTGTTATATGTTTCCCCTAATATTGAGTGAAATTCTCTTAGTTCTTTATTGTTCTTTCTCCTCCCCTTTAGATCTCTGTTGATCTCCCTTTTTTGTTGTATTAACTAACCATTGTTTTTTGGATCTTGGAGAGTAATATGAGTAATGTAGTTGTGTTGATGAGTTGGATAATGAATTTTGTTGATGATTCTTGTCTTTTTATCTCAATAATGATTATGTAAAAAACCCCTTTCTAATCTACCTTTGTTTCAACTTTGTTAATTAGACATTTGTGACCATTTATGGGAACATTTTTTTACAGATTTAGTGTTTGTTAATTTGTAAGTCACATTGATCAGCATCTCAAATCAC

Coding sequence (CDS)

ATGACGATGGATCCGAGTGACAGAGGATCGGAATCGGAGGACATCTCTGGCAAGATCTCCGGCGGGGTTTCGTCGGAGGAGAGTCAAGTCAACGAGCAGAACAAGAAGACCTGTGCTGACTGCGGCACTTCGAAAACCCCTTTGTGGAGAGGCGGACCGGCCGGTCCAAAGTCTCTTTGCAATGCTTGTGGGATTAGAAGTAGGAAGAAGAGGAGGGCAATTTTGGGATTAAGTAAAGGAGTTGTTGAGGATAAGAAGAACAAAAGAAGCAATACTATTAGCAATAGTAGTAAGTTGAGAGATTCTTTGAAACAGAGGCTTTTGGATTTAGGAAGAGAAGTTTTGATGCAAAGATCTACTGTGGAGAGGCAAAGGAAGAAGAAATTGGGAGAAGAAGAACAAGCTGCTGTGTTGTTAATGGCTCTTTCATATGGCTCTGTTTATGCTTAA

Protein sequence

MTMDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSKGVVEDKKNKRSNTISNSSKLRDSLKQRLLDLGREVLMQRSTVERQRKKKLGEEEQAAVLLMALSYGSVYA

Homology

[Close]

BLAST of Sed0006924 vs. NCBI nr
Match: XP_038877875.1 (GATA transcription factor 15-like [Benincasa hispida])

HSP 1 Score: 254.6 bits (649), Expect = 5.3e-64
Identity = 140/149 (93.96%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   MTMDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60
           M MDPSDRGSESED+SGK +GGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC
Sbjct: 1   MMMDPSDRGSESEDMSGKNTGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60

Query: 61  NACGIRSRKKRRAILGLSKGVVEDKKNKRSNTISNSSKLRDSLKQRLLDLGREVLMQRST 120
           NACGIRSRKKRRAILGLSKGVVEDKKNK+SN ISN SKLRDSLKQRLL LGREVLMQRST
Sbjct: 61  NACGIRSRKKRRAILGLSKGVVEDKKNKKSNNISN-SKLRDSLKQRLLALGREVLMQRST 120

Query: 121 VERQRKKKLGEEEQAAVLLMALSYGSVYA 150
           VERQR KKLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 VERQR-KKLGEEEQAAVLLMALSYGSVYA 147

[Close]

BLAST of Sed0006924 vs. NCBI nr
Match: XP_004134235.1 (GATA transcription factor 16 [Cucumis sativus] >KGN57147.1 hypothetical protein Csa_010926 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 1.7e-62
Identity = 136/149 (91.28%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 1   MTMDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60
           M MDPSDRGSESED+SGK S GVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC
Sbjct: 1   MMMDPSDRGSESEDMSGKNSSGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60

Query: 61  NACGIRSRKKRRAILGLSKGVVEDKKNKRSNTISNSSKLRDSLKQRLLDLGREVLMQRST 120
           NACGIRSRKKRRAILGLSKGVVEDKKNK+S+ IS++SK RDSLKQRLL LGREVLMQRST
Sbjct: 61  NACGIRSRKKRRAILGLSKGVVEDKKNKKSSNISSNSKFRDSLKQRLLALGREVLMQRST 120

Query: 121 VERQRKKKLGEEEQAAVLLMALSYGSVYA 150
           VERQR KKLGEEEQAAVLLMALS GSVYA
Sbjct: 121 VERQR-KKLGEEEQAAVLLMALSCGSVYA 148

[Close]

BLAST of Sed0006924 vs. NCBI nr
Match: XP_008438922.1 (PREDICTED: GATA transcription factor 16-like [Cucumis melo] >KAA0049527.1 GATA transcription factor 16-like [Cucumis melo var. makuwa] >TYK16205.1 GATA transcription factor 16-like [Cucumis melo var. makuwa])

HSP 1 Score: 249.2 bits (635), Expect = 2.2e-62
Identity = 136/147 (92.52%), Postives = 141/147 (95.92%), Query Frame = 0


Query: 3   MDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNA 62
           MDPSDRGSESED+SGK S GVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNA
Sbjct: 2   MDPSDRGSESEDMSGKNSSGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNA 61

Query: 63  CGIRSRKKRRAILGLSKGVVEDKKNKRSNTISNSSKLRDSLKQRLLDLGREVLMQRSTVE 122
           CGIRSRKKRRAILGLSKGVVEDKKNK+S+ IS++SKLRDSLKQRLL LGREVLMQRSTVE
Sbjct: 62  CGIRSRKKRRAILGLSKGVVEDKKNKKSSNISSNSKLRDSLKQRLLALGREVLMQRSTVE 121

Query: 123 RQRKKKLGEEEQAAVLLMALSYGSVYA 150
           RQR KKLGEEEQAAVLLMALS GSVYA
Sbjct: 122 RQR-KKLGEEEQAAVLLMALSCGSVYA 147

[Close]

BLAST of Sed0006924 vs. NCBI nr
Match: XP_022137770.1 (GATA transcription factor 16-like [Momordica charantia])

HSP 1 Score: 245.7 bits (626), Expect = 2.4e-61
Identity = 136/153 (88.89%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MTMDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60
           M +DPSDRGSESED+SGK SGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC
Sbjct: 1   MMLDPSDRGSESEDMSGKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60

Query: 61  NACGIRSRKKRRAILGLSKGVVEDKKNKRS----NTISNSSKLRDSLKQRLLDLGREVLM 120
           NACGIRSRKKRRAILGLSKGVVEDKK+K+S    ++ S+SS+LRDSLKQRLL LGREVLM
Sbjct: 61  NACGIRSRKKRRAILGLSKGVVEDKKSKKSSSNISSNSSSSRLRDSLKQRLLALGREVLM 120

Query: 121 QRSTVERQRKKKLGEEEQAAVLLMALSYGSVYA 150
           QRSTVERQR KKLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 QRSTVERQR-KKLGEEEQAAVLLMALSYGSVYA 152

[Close]

BLAST of Sed0006924 vs. NCBI nr
Match: XP_022950506.1 (GATA transcription factor 15-like [Cucurbita moschata] >KAG6597560.1 GATA transcription factor 15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029005.1 GATA transcription factor 15, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.7 bits (626), Expect = 2.4e-61
Identity = 136/151 (90.07%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 1   MTMDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60
           M MDPSDR SESEDIS K SGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC
Sbjct: 1   MMMDPSDRVSESEDISSKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60

Query: 61  NACGIRSRKKRRAILGLSKGVVEDKKNKRSNTISN--SSKLRDSLKQRLLDLGREVLMQR 120
           NACGIRSRKKRRAILGLSKGVVEDKKNKRSN+ +N  +SKLRDSLKQRL+ LGREVLMQR
Sbjct: 61  NACGIRSRKKRRAILGLSKGVVEDKKNKRSNSCNNISNSKLRDSLKQRLMALGREVLMQR 120

Query: 121 STVERQRKKKLGEEEQAAVLLMALSYGSVYA 150
           S+VERQR KKLGEEEQAAVLLMALSYGSV+A
Sbjct: 121 SSVERQR-KKLGEEEQAAVLLMALSYGSVFA 150

[Close]

BLAST of Sed0006924 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 4.8e-36
Identity = 91/154 (59.09%), Postives = 110/154 (71.43%), Query Frame = 0


Query: 3   MDPSDRGSESEDISGKISGGVSSEESQVNEQN------KKTCADCGTSKTPLWRGGPAGP 62
           +DP+++  +SE +  K++   + EE   +  N      KK+CA CGTSKTPLWRGGPAGP
Sbjct: 2   LDPTEKVIDSESMESKLTSVDAIEEHSSSSSNEAISNEKKSCAICGTSKTPLWRGGPAGP 61

Query: 63  KSLCNACGIRSRKKRRAILGLSKGVVEDKKNKRSNTISNSSKLRDSLKQRLLDLGREVLM 122
           KSLCNACGIR+RKKRR ++       EDKK K  N    + K  DSLKQRL++LGREV+M
Sbjct: 62  KSLCNACGIRNRKKRRTLISNRS---EDKKKKSHN---RNPKFGDSLKQRLMELGREVMM 121

Query: 123 QRSTVERQRKKKLGEEEQAAVLLMALSY-GSVYA 150
           QRST E QR+ KLGEEEQAAVLLMALSY  SVYA
Sbjct: 122 QRSTAENQRRNKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of Sed0006924 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.5e-33
Identity = 83/139 (59.71%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 11  ESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKK 70
           +SE +  +    +    + VN++ KKTCADCGTSKTPLWRGGP GPKSLCNACGIR+RKK
Sbjct: 12  DSETMKTRAEDMIEQNNTSVNDK-KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKK 71

Query: 71  RRAILGLSKGVVEDKKNKRSNTISNSSKLRDSLKQRLLDLGREVLMQRSTVERQRKKKLG 130
           RR       G  ++KK K+S++   + K  +SLKQ L+DLG   + +RSTVE+QR +KLG
Sbjct: 72  RRG------GTEDNKKLKKSSSGGGNRKFGESLKQSLMDLG---IRKRSTVEKQR-QKLG 131

Query: 131 EEEQAAVLLMALSYGSVYA 150
           EEEQAAVLLMALSYGSVYA
Sbjct: 132 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of Sed0006924 vs. ExPASy Swiss-Prot
Match: Q9LIB5 (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.2e-24
Identity = 81/176 (46.02%), Postives = 102/176 (57.95%), Query Frame = 0


Query: 11  ESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKK 70
           ++E+ S   SGG SS     +   K+TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKK
Sbjct: 22  DNENCSSSGSGGGSS-----SGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKK 81

Query: 71  RRAILGLSKGVVEDKKNKRSN-------------------------------TISNSSKL 130
           R+A LG+     E KKN++SN                                I N+ + 
Sbjct: 82  RQAALGMRS--EEKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRS 141

Query: 131 RDSLK----QRLLDLGREV-LMQRSTVERQRK-KKLGEEEQAAVLLMALSYGSVYA 150
             S       + LDLG +V +M+RS VE++R  +KLGEEE+AAVLLMALS  SVYA
Sbjct: 142 SSSSSNKGVSKFLDLGFKVPVMKRSAVEKKRLWRKLGEEERAAVLLMALSCSSVYA 190

[Close]

BLAST of Sed0006924 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 4.4e-13
Identity = 50/115 (43.48%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 36  KTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRA-ILGLSKGVVEDKKNKRSNTIS 95
           + C++C T+KTP+WRGGP GPKSLCNACGIR RK+RR+ +LG+               I 
Sbjct: 26  RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIH--------------II 85

Query: 96  NSSKLRDSLKQRLLDLGREVLMQRSTVERQRKKKLGEEEQAAVLLMALSYGSVYA 150
            S K   S K  LL            V  ++++ L EEEQAA+ L+ LS  SV A
Sbjct: 86  RSHKSLASKKINLLS------SSHGGVAVKKRRSLKEEEQAALCLLLLSCSSVLA 120

[Close]

BLAST of Sed0006924 vs. ExPASy Swiss-Prot
Match: Q9SZI6 (Putative GATA transcription factor 22 OS=Arabidopsis thaliana OX=3702 GN=GATA22 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-12
Identity = 66/186 (35.48%), Postives = 90/186 (48.39%), Query Frame = 0


Query: 10  SESEDISGKISGGVSSEESQVNEQNK---KTCADCGTSKTPLWRGGPAGPKSLCNACGIR 69
           S  +  +   S  +S+ E Q    N    + C+DC T+KTPLWR GP GPKSLCNACGIR
Sbjct: 170 SSKQHTNNDQSSNLSNSERQNGYNNDCVIRICSDCNTTKTPLWRSGPRGPKSLCNACGIR 229

Query: 70  SRKKRR---------AILGLSKGVVEDK---KNKRSN----------------------- 129
            RK RR         A+ G+S  V++ K   KNK SN                       
Sbjct: 230 QRKARRAAMATATATAVSGVSPPVMKKKMQNKNKISNGVYKILSPLPLKVNTCKRMITLE 289

Query: 130 ---------TISNSSKLRDSLKQRLLDLGREVLMQRSTVERQRKKKLGEEEQAAVLLMAL 149
                    T SNS+ L  S      DL   +L+ +S+  +Q   +  +E++AA+LLMAL
Sbjct: 290 ETALAEDLETQSNSTMLSSSDNIYFDDLA--LLLSKSSAYQQVFPQ--DEKEAAILLMAL 349

[Close]

BLAST of Sed0006924 vs. ExPASy TrEMBL
Match: A0A0A0L942 (GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G165640 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.2e-63
Identity = 136/149 (91.28%), Postives = 141/149 (94.63%), Query Frame = 0


Query: 1   MTMDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60
           M MDPSDRGSESED+SGK S GVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC
Sbjct: 1   MMMDPSDRGSESEDMSGKNSSGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60

Query: 61  NACGIRSRKKRRAILGLSKGVVEDKKNKRSNTISNSSKLRDSLKQRLLDLGREVLMQRST 120
           NACGIRSRKKRRAILGLSKGVVEDKKNK+S+ IS++SK RDSLKQRLL LGREVLMQRST
Sbjct: 61  NACGIRSRKKRRAILGLSKGVVEDKKNKKSSNISSNSKFRDSLKQRLLALGREVLMQRST 120

Query: 121 VERQRKKKLGEEEQAAVLLMALSYGSVYA 150
           VERQR KKLGEEEQAAVLLMALS GSVYA
Sbjct: 121 VERQR-KKLGEEEQAAVLLMALSCGSVYA 148

[Close]

BLAST of Sed0006924 vs. ExPASy TrEMBL
Match: A0A5A7U5C0 (GATA transcription factor 16-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001340 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.1e-62
Identity = 136/147 (92.52%), Postives = 141/147 (95.92%), Query Frame = 0


Query: 3   MDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNA 62
           MDPSDRGSESED+SGK S GVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNA
Sbjct: 2   MDPSDRGSESEDMSGKNSSGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNA 61

Query: 63  CGIRSRKKRRAILGLSKGVVEDKKNKRSNTISNSSKLRDSLKQRLLDLGREVLMQRSTVE 122
           CGIRSRKKRRAILGLSKGVVEDKKNK+S+ IS++SKLRDSLKQRLL LGREVLMQRSTVE
Sbjct: 62  CGIRSRKKRRAILGLSKGVVEDKKNKKSSNISSNSKLRDSLKQRLLALGREVLMQRSTVE 121

Query: 123 RQRKKKLGEEEQAAVLLMALSYGSVYA 150
           RQR KKLGEEEQAAVLLMALS GSVYA
Sbjct: 122 RQR-KKLGEEEQAAVLLMALSCGSVYA 147

[Close]

BLAST of Sed0006924 vs. ExPASy TrEMBL
Match: A0A1S3AXI2 (GATA transcription factor 16-like OS=Cucumis melo OX=3656 GN=LOC103483877 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.1e-62
Identity = 136/147 (92.52%), Postives = 141/147 (95.92%), Query Frame = 0


Query: 3   MDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNA 62
           MDPSDRGSESED+SGK S GVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNA
Sbjct: 2   MDPSDRGSESEDMSGKNSSGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNA 61

Query: 63  CGIRSRKKRRAILGLSKGVVEDKKNKRSNTISNSSKLRDSLKQRLLDLGREVLMQRSTVE 122
           CGIRSRKKRRAILGLSKGVVEDKKNK+S+ IS++SKLRDSLKQRLL LGREVLMQRSTVE
Sbjct: 62  CGIRSRKKRRAILGLSKGVVEDKKNKKSSNISSNSKLRDSLKQRLLALGREVLMQRSTVE 121

Query: 123 RQRKKKLGEEEQAAVLLMALSYGSVYA 150
           RQR KKLGEEEQAAVLLMALS GSVYA
Sbjct: 122 RQR-KKLGEEEQAAVLLMALSCGSVYA 147

[Close]

BLAST of Sed0006924 vs. ExPASy TrEMBL
Match: A0A6J1C7L6 (GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111009131 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61
Identity = 136/153 (88.89%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MTMDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60
           M +DPSDRGSESED+SGK SGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC
Sbjct: 1   MMLDPSDRGSESEDMSGKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60

Query: 61  NACGIRSRKKRRAILGLSKGVVEDKKNKRS----NTISNSSKLRDSLKQRLLDLGREVLM 120
           NACGIRSRKKRRAILGLSKGVVEDKK+K+S    ++ S+SS+LRDSLKQRLL LGREVLM
Sbjct: 61  NACGIRSRKKRRAILGLSKGVVEDKKSKKSSSNISSNSSSSRLRDSLKQRLLALGREVLM 120

Query: 121 QRSTVERQRKKKLGEEEQAAVLLMALSYGSVYA 150
           QRSTVERQR KKLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 QRSTVERQR-KKLGEEEQAAVLLMALSYGSVYA 152

[Close]

BLAST of Sed0006924 vs. ExPASy TrEMBL
Match: A0A6J1GF07 (GATA transcription factor 15-like OS=Cucurbita moschata OX=3662 GN=LOC111453593 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61
Identity = 136/151 (90.07%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 1   MTMDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60
           M MDPSDR SESEDIS K SGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC
Sbjct: 1   MMMDPSDRVSESEDISSKNSGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60

Query: 61  NACGIRSRKKRRAILGLSKGVVEDKKNKRSNTISN--SSKLRDSLKQRLLDLGREVLMQR 120
           NACGIRSRKKRRAILGLSKGVVEDKKNKRSN+ +N  +SKLRDSLKQRL+ LGREVLMQR
Sbjct: 61  NACGIRSRKKRRAILGLSKGVVEDKKNKRSNSCNNISNSKLRDSLKQRLMALGREVLMQR 120

Query: 121 STVERQRKKKLGEEEQAAVLLMALSYGSVYA 150
           S+VERQR KKLGEEEQAAVLLMALSYGSV+A
Sbjct: 121 SSVERQR-KKLGEEEQAAVLLMALSYGSVFA 150

[Close]

BLAST of Sed0006924 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 )

HSP 1 Score: 152.1 bits (383), Expect = 3.4e-37
Identity = 91/154 (59.09%), Postives = 110/154 (71.43%), Query Frame = 0


Query: 3   MDPSDRGSESEDISGKISGGVSSEESQVNEQN------KKTCADCGTSKTPLWRGGPAGP 62
           +DP+++  +SE +  K++   + EE   +  N      KK+CA CGTSKTPLWRGGPAGP
Sbjct: 2   LDPTEKVIDSESMESKLTSVDAIEEHSSSSSNEAISNEKKSCAICGTSKTPLWRGGPAGP 61

Query: 63  KSLCNACGIRSRKKRRAILGLSKGVVEDKKNKRSNTISNSSKLRDSLKQRLLDLGREVLM 122
           KSLCNACGIR+RKKRR ++       EDKK K  N    + K  DSLKQRL++LGREV+M
Sbjct: 62  KSLCNACGIRNRKKRRTLISNRS---EDKKKKSHN---RNPKFGDSLKQRLMELGREVMM 121

Query: 123 QRSTVERQRKKKLGEEEQAAVLLMALSY-GSVYA 150
           QRST E QR+ KLGEEEQAAVLLMALSY  SVYA
Sbjct: 122 QRSTAENQRRNKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of Sed0006924 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 )

HSP 1 Score: 141.7 bits (356), Expect = 4.6e-34
Identity = 83/139 (59.71%), Postives = 103/139 (74.10%), Query Frame = 0


Query: 11  ESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKK 70
           +SE +  +    +    + VN++ KKTCADCGTSKTPLWRGGP GPKSLCNACGIR+RKK
Sbjct: 12  DSETMKTRAEDMIEQNNTSVNDK-KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKK 71

Query: 71  RRAILGLSKGVVEDKKNKRSNTISNSSKLRDSLKQRLLDLGREVLMQRSTVERQRKKKLG 130
           RR       G  ++KK K+S++   + K  +SLKQ L+DLG   + +RSTVE+QR +KLG
Sbjct: 72  RRG------GTEDNKKLKKSSSGGGNRKFGESLKQSLMDLG---IRKRSTVEKQR-QKLG 131

Query: 131 EEEQAAVLLMALSYGSVYA 150
           EEEQAAVLLMALSYGSVYA
Sbjct: 132 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of Sed0006924 vs. TAIR 10
Match: AT3G16870.1 (GATA transcription factor 17 )

HSP 1 Score: 111.7 bits (278), Expect = 5.1e-25
Identity = 81/176 (46.02%), Postives = 102/176 (57.95%), Query Frame = 0


Query: 11  ESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKK 70
           ++E+ S   SGG SS     +   K+TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKK
Sbjct: 22  DNENCSSSGSGGGSS-----SGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKK 81

Query: 71  RRAILGLSKGVVEDKKNKRSN-------------------------------TISNSSKL 130
           R+A LG+     E KKN++SN                                I N+ + 
Sbjct: 82  RQAALGMRS--EEKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRS 141

Query: 131 RDSLK----QRLLDLGREV-LMQRSTVERQRK-KKLGEEEQAAVLLMALSYGSVYA 150
             S       + LDLG +V +M+RS VE++R  +KLGEEE+AAVLLMALS  SVYA
Sbjct: 142 SSSSSNKGVSKFLDLGFKVPVMKRSAVEKKRLWRKLGEEERAAVLLMALSCSSVYA 190

[Close]

BLAST of Sed0006924 vs. TAIR 10
Match: AT4G16141.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 101.3 bits (251), Expect = 6.9e-22
Identity = 80/196 (40.82%), Postives = 97/196 (49.49%), Query Frame = 0


Query: 1   MTMDPSDRGSESEDISGKISGGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLC 60
           MT +      ES   S  +  G  S      +  KKTC DCGTS+TPLWRGGPAGPKSLC
Sbjct: 3   MTEETKTTKLESAGDSSDVDNGNCSSSGSGGD-TKKTCVDCGTSRTPLWRGGPAGPKSLC 62

Query: 61  NACGIRSRKKRRAILG-------------------------------------------- 120
           NACGI+SRKKR+A LG                                            
Sbjct: 63  NACGIKSRKKRQAALGIRQDDIKIKSKSNNNLGLESRNVKTGKGEPVNVKIAKCEPGIVK 122

Query: 121 LSKGVVEDKKNKRSNTISNSSKLRDSLKQ-----RLLDLGREV-LMQRSTVERQRK-KKL 146
           ++KG   + KNK      NSS   ++ K      R LD G +V  M+RS VE++R  +KL
Sbjct: 123 IAKGEPGNVKNKIKRDPENSSSSNNNKKNVKRVGRFLDFGFKVPAMKRSAVEKKRLWRKL 182

[Close]

BLAST of Sed0006924 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 )

HSP 1 Score: 75.9 bits (185), Expect = 3.1e-14
Identity = 50/115 (43.48%), Postives = 65/115 (56.52%), Query Frame = 0


Query: 36  KTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRA-ILGLSKGVVEDKKNKRSNTIS 95
           + C++C T+KTP+WRGGP GPKSLCNACGIR RK+RR+ +LG+               I 
Sbjct: 26  RCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIH--------------II 85

Query: 96  NSSKLRDSLKQRLLDLGREVLMQRSTVERQRKKKLGEEEQAAVLLMALSYGSVYA 150
            S K   S K  LL            V  ++++ L EEEQAA+ L+ LS  SV A
Sbjct: 86  RSHKSLASKKINLLS------SSHGGVAVKKRRSLKEEEQAALCLLLLSCSSVLA 120

The following BLAST results are available for this feature:

BLAST of Sed0006924 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877875.1	5.3e-64	93.96	GATA transcription factor 15-like [Benincasa hispida]	[more]
XP_004134235.1	1.7e-62	91.28	GATA transcription factor 16 [Cucumis sativus] >KGN57147.1 hypothetical protein ...	[more]
XP_008438922.1	2.2e-62	92.52	PREDICTED: GATA transcription factor 16-like [Cucumis melo] >KAA0049527.1 GATA t...	[more]
XP_022137770.1	2.4e-61	88.89	GATA transcription factor 16-like [Momordica charantia]	[more]
XP_022950506.1	2.4e-61	90.07	GATA transcription factor 15-like [Cucurbita moschata] >KAG6597560.1 GATA transc...	[more]

BLAST of Sed0006924 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LG10	4.8e-36	59.09	GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2	[more]
Q9FJ10	6.5e-33	59.71	GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1	[more]
Q9LIB5	7.2e-24	46.02	GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1	[more]
Q8LC59	4.4e-13	43.48	GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2	[more]
Q9SZI6	2.9e-12	35.48	Putative GATA transcription factor 22 OS=Arabidopsis thaliana OX=3702 GN=GATA22 ...	[more]

BLAST of Sed0006924 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L942	8.2e-63	91.28	GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G165640 P...	[more]
A0A5A7U5C0	1.1e-62	92.52	GATA transcription factor 16-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3AXI2	1.1e-62	92.52	GATA transcription factor 16-like OS=Cucumis melo OX=3656 GN=LOC103483877 PE=4 S...	[more]
A0A6J1C7L6	1.2e-61	88.89	GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111009131...	[more]
A0A6J1GF07	1.2e-61	90.07	GATA transcription factor 15-like OS=Cucurbita moschata OX=3662 GN=LOC111453593 ...	[more]

BLAST of Sed0006924 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06740.1	3.4e-37	59.09	GATA transcription factor 15	[more]
AT5G49300.1	4.6e-34	59.71	GATA transcription factor 16	[more]
AT3G16870.1	5.1e-25	46.02	GATA transcription factor 17	[more]
AT4G16141.1	6.9e-22	40.82	GATA type zinc finger transcription factor family protein	[more]
AT5G26930.1	3.1e-14	43.48	GATA transcription factor 23	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47172	OS01G0976800 PROTEIN	coord: 18..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006924.1	Sed0006924.1	mRNA
Sed0006924.2	Sed0006924.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding