Lcy08g004390 (gene) Sponge gourd (P93075) v1

Overview
NameLcy08g004390
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
LocationChr08: 5880517 .. 5885837 (-)
RNA-Seq ExpressionLcy08g004390
SyntenyLcy08g004390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAACAAAGAAAGAAGAAGAAGATGTAGGAAGTTTCAAAAAAGAAAAGGAAAAGGCCCCTTTTTCGAGCAGCGGCGGCAGGGTTTAGCATTTGAATGCCCTAAGTCTAAGACGGAGCTCCGTTCATCGTGGCCGATTGCATAGAATTTCTCGCTGCATTCTCAGATTTACCGATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCTCAGGTTGCAAGGCTGCCACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTTCTGCAAGGTAATTTCCTCAAAAGCTTTCGATTTCGACGAAGTGTGCTCAATGTAAATTAACTATGAAATCTGTCTGAGTTGAGTTAACTGCGACGACTAAGGATCGAGAATAGGGCACTTGTGCCGATGTGGATCGGAAACGAATGCTGAATTGAGTTGAAAATAAGCTGAATGTTCTCGTTTGTGATCATTTATTTATTTAATTCTGTGAAGGGTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCTGCATTGATGACTTCGATGCTTTCTGTTTCTCGACATAGTTATGGCTGGCTTTCAGAAGGTACTTTCAGTCTCTTGTTCTTCTAGTAGTTTCTAGGAATCGGACCAAGTTATGAGCAATTATACTAGGATGAATTTTACTCTTTTCAATGTCTTGTTATGCTGTCAGTTTTTTCTTTGGTTCTGGTTTTTGTTGGCAAAAAATTAAATCTGCTGTGTTGGTTGAATAGCTTTATTAGTTACTTGGATTGGCTTTGTGATGTACAACACAGAGGAGGATAACATGTGATATACACAATAGATCCTTTAAATTTGGACCTTAGAATGTAGGATGAGAAATAGGATGGGAAAATAGTGGAGGGAGGGATATTTTATTTATTTATTTATTATTTTTATATATACAAGAAACACGAACTTCTCACTGATATTTGAGAAGTTATAGATGAAGATGAAGAGATGAGCTTTTATAATTCATTTCATCATAATTTTCACCAAGTGATTGAAAACAATAATAGGAAACTATCTAGAAAATAATTCTCCACTTGCTCATGTTAAACCATCAACAGTATTTTGGTATTTTGGGCAAATATATTTCCCCACTGCATCAGTAATCTAAAGTCTAAACGCTCTTTTGGCTTGATTGAGCAGATGTTTTTTGCTATCTTTTTCATATCAGTGAATCAAGAATCTGAGTTTATTGTCTTAAGATAAATATAAAATGCTGCATTCTGGATTGGGGTCTAACTTTTTCACCGCTAAAAAACACAAAATGGCTTTCATCCACATACTTGAAATTAAATGTGAAGATACTAATTGCTATGTTTAATCAGTGTTCAATGATGATGTGTGATGAATGGTCAAGGGGATTCGAGAGAAGATTTTTATGCAGAGTTCCACATTGTGACAGTGCCCGCTGCTAAATTAGATGAGCTGATGCACAGGGATTTGGTTTTCCATGTCTTGACTTTCAGTCAAGTTTGCATGTCTTGAATTCCTAATTTGTGTAACTATGGATCACTAGAATGTATAGGAACATCTACCGTAGACAGACATTTGCCTTTTATTTGAAAAGGAAGGCTTTAAAAAAATTGTGCTCATGGAGTCATTATGTTGGATTACTTTATAGAAATGTCTTGCAATTTTGAAATAAAAATGCTTATGGAGATAAGACTTGGAGATTCTTCTCTAGCAGTCTTTATGTTATCTTGTATGTTACTCTATCTTTACTCATTCTATGTGGATACCTCATGTTTTTGATGGATGCTTGTTTTCTAAAACTCTAAAAGTTGTTGTGTACTAAATATTATTCTATGAGCTCGAAAAGATTATCGAATACAATGCCTTTAGGTAACTTCCAATCAAAGTTAATAACTGCATTTATCTGCTGACGTGTGGAAGGCTCTTTGATACTAAACAGTAATTTGAAGTAGCAGTACTCTAATGGCTTTTGATTCATTTATGTCCAATAAGAGTTTAGAAATCCTTTCCTCGTTTTTTAACGCCATTTAATATCCTATTTGGCAGTGACTGGCTTGCAAACTTCATGATATACGTTGAATAGAGAAGGTTCGATTATCTGGCAAACATATTCAACCAAGTAATCTTCGATGGCATTGGCTACCAGGGGTTTAAGCCTGGCATAGCGATCTTTTATTCTAAAGTTTGTTTCCTGAGCATGTTTGATCGATTCTCAAGTACAAGTAAAAGAAAATTTCCAACTTGTCCCCTGTTTCTGTCATTGACAAAATACCATGATTGCTTGTTCTAATTTATACTTCTTCTGATATGTTATATGTTACTGAAATTTTAATAATTTACACAAGTTGTGATTCTCTCCTAGAAATGATTACAATTTATAATGCGTATACACAGTTGCACTCGTGACTTGCCTTCAACTATACTCAAATAACCTAAGTATGATGAGCAGAGTTGCTGGAGACCATCAATAGAGTTCCGTGAGTGCAAAGGTTATAATGCAAGTTCAGTATAGCTTTTGTCAAGGAAATAACTGTGCAAGTTAGCTGAATATCATAATGGTTTTTTTTTTTTTCCAGAGAAAAGAGGTAACAAAATGCAAATGCATTGGTAGAACCTTCTATTTACTTTTCCAACTAATACGACCAGGAAGTAACATGTGCACTTGCCGTTCCAGATCTTTATCACATCAGATCCAAACTAAGCAGGTAATAGTCACAGCAATAATCAACTTATATTACCTTCAGCAAGATTTGTGTTGCCATATAAAACTGTATACCAGTTAAATAGCAGTCCACCACACAATAGAGAAAGTAAATCCATGATAAATTAACATTGCACTATCCAAAGTCACTCTTCGACGTTAACTAATTCATATTCAACCAGAGAGAGATTGTTGTCTTCTTTAACTTCAAAGTTAGCTGGTTCAGCAACTTCAATTCGTCCCCATTTATCTACTGCTAACCTCATAGAACCTTTAAACATGTCAATCTTTGCATTCCGCAGGGTCACAGTGTTTCCTGGCTTCATGATATCAACTGCAAAAGTTACGACCATTTGTTTAATTAGACAACAAAACACCATAAGCATTGAAGCTTTTTATTTTACTGGAGGTGGGAGGTAAGGATTGAAGATTACTCCACTGCCTCAACATACAAAAAACTCGAACTCGAGCACAAACTCAAATACATGACCGTCCAGCCTCAGAATGTGACTAATTCCCAAATAATGAACAAATTTTATCCCCAACACAAATAAGATTTACACACACGTCTGTTTTTCTAATCAGGATGGCTGTCCCACTAATCTAAAAAAATAAAGGTACATTCTTGCATTCATCTCAAAGACCAAAAATAACAAAATGTCACCATCCGGCTTCAGAATAGCTTTTTTATGCAAAAGAATGTTGAGAAGTACAATGATTGTTCAAAATCCGCTAAACAGAGCATACATATACAGGTAATATCATAAAAATAGTAATCTCTAGCAACCAAGATAACGAACAAGATGACTGTGAATAAGGGCTGGTTCCTTGTCCTCTTCCACCCAAACCCACAAATGGATTGCCATAGGTTCTTATAACCAAGCAGAGCCAAAAACACCAACAACTACGTTCAAGGCAAGAGATATAGAGACGACTATGCAATTAAATTAACAGCAGATTTTAAGTCAGAAGAAACATCTAAGTTGAGACATAAAGGGTGTCTGCAGCCATAGACCTTAATCCAGTATCTCAAAGCTCCTGATTTACAGAAGATGAACAAAAATGAGCTCTATCTTGACCAGTAACATCCCTCATACCTCAGAGAGAATGACTTGCTCCAGAAATAATAAAGAAGAAACTCACGGACCAGAAAACTCATACACTAACTATCCTCAAGCTCCGTTCAAGAGCTAGAACTAGAGACACTCTTCCCTAAAAGAATTCCAGGTAGTCTGTTTCAAATTTCAACAATGTAGTTTCCTTTGCACCCTCAGATCAAGGTATCTAAGAAACCCTTCAAATCTGCAGGAATCTTCCGAACTTATATTGAACAACAATCACATACACATTCTTCCTCCATAGATTAAAGTCTTCGGCCCAAAAAAGCATTTCTATTTCAAACCTTGTTAAAGCCATTTAAAGTTTTCTTGATTCTCATTGATTGATTGGGATACCTCCATTAGACAAGACCCTATCTTTGATACCACTCCTTGTTATACAATTATCTCAACACCCAAATTCTATTTATATTAGAACACATCCATTCAAAAAAAAATTAACAGAACAAAAGATCCAGGGTGGTTCAGCACAGACGAGTCACTATAAGCTTAAATAAATTTTTGTTGGGGCACCTTCTAGTAACTATAAAAGGAGGTTTCTTTGATGGGCTACCTTTCAGAATACCCCTGAACGGAGTAACTTCTCTATTATCAAGGAAAAGTTTCTATTGCTAGTTATAAAAAAAAAACAAAAGCTACAGAGAAGAATACTAAATTCACGAGGCACAAAGATGAAATTCATAAACAAAAAAGAAAATCACTCACTATTCAAAAGAATTCTCACTCACAGCAAAAAAAAATCCAACAGAAATGAAGAGCCCACATCCCAATTTTAGAAAAAAAAAAAAAACATCCAAGAAAAAGGAAACTAATATCCATCCATTCTATCCAATGTTTTTTCATGACTGTACACAAAATCGCCTGAGCAAAACACATGGAGACATCCAAAAGATGAGAAAAAGTAGGCTAACAAATACTTTTATGGCTGCAGAGAAACATACCTTGGTCGTTTCGAGCTGTGAAGACGATGGAACCAGTCTCATCACCAACAAGACATTCAGAGATACGAGTTAATTGCTGAGGGCGAGCCGTAAGCATGGCGGATCGTCCACCTTTATTGACCACCTTGACATTTTTGGAGCTCACAACCTTGACCGTGAGAGTGTGGCCGCTCGTACCAGGCTTTAGCTCTTCTACTTTAATGAAGACAGGCTTCCTCTTTGCAGGGGCATTCACTGTTGCCGTCGCCATGGAAATCGAGGTAACGGAACGAAACCCTGTTGCCGATGAGAATGCACCGTGAAAATGGAGAATGAAATCGAACCCTGAAGGTCAAAACCCTAACCCTAAGAATTTAATTTCGGATTGCACTCGCATTTGGGATTTTCAGATTAGGTTTCGAAATATGGGCTCATTTCTTGTCACTGGATTGGGCTGGGTTAAGATTTTGGGCCCTGGGCTTCGATTAAATTATAAATTTAGTCCTTGTCT

mRNA sequence

AAAAAACAAAGAAAGAAGAAGAAGATGTAGGAAGTTTCAAAAAAGAAAAGGAAAAGGCCCCTTTTTCGAGCAGCGGCGGCAGGGTTTAGCATTTGAATGCCCTAAGTCTAAGACGGAGCTCCGTTCATCGTGGCCGATTGCATAGAATTTCTCGCTGCATTCTCAGATTTACCGATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCTCAGGTTGCAAGGCTGCCACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTTCTGCAAGGGTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCTGCATTGATGACTTCGATGCTTTCTGTTTCTCGACATAGTTATGGCTGGCTTTCAGAAGTGACTGGCTTGCAAACTTCATGATATACGTTGAATAGAGAAGGTTCGATTATCTGGCAAACATATTCAACCAAGTAATCTTCGATGGCATTGGCTACCAGGGGTTTAAGCCTGGCATAGCGATCTTTTATTCTAAAGTTTGTTTCCTGAGCATGTTTGATCGATTCTCAAGTACAAGTAAAAGAAAATTTCCAACTTGTCCCCTGTTTCTGTCATTGACAAAATACCATGATTGCTTGTTCTAATTTATACTTCTTCTGATATGTTATATGTTACTGAAATTTTAATAATTTACACAAGTTGTGATTCTCTCCTAGAAATGATTACAATTTATAATGCGTATACACAGTTGCACTCGTGACTTGCCTTCAACTATACTCAAATAACCTAAGTATGATGAGCAGAGTTGCTGGAGACCATCAATAGAGTTCCGTGAGTGCAAAGAGAAAAGAGGTAACAAAATGCAAATGCATTGGTAGAACCTTCTATTTACTTTTCCAACTAATACGACCAGGAAGTAACATGTGCACTTGCCGTTCCAGATCTTTATCACATCAGATCCAAACTAAGCAGAGAAACATACCTTGGTCGTTTCGAGCTGTGAAGACGATGGAACCAGTCTCATCACCAACAAGACATTCAGAGATACGAGTTAATTGCTGAGGGCGAGCCGTAAGCATGGCGGATCGTCCACCTTTATTGACCACCTTGACATTTTTGGAGCTCACAACCTTGACCGTGAGAGTGTGGCCGCTCGTACCAGGCTTTAGCTCTTCTACTTTAATGAAGACAGGCTTCCTCTTTGCAGGGGCATTCACTGTTGCCGTCGCCATGGAAATCGAGGTAACGGAACGAAACCCTGTTGCCGATGAGAATGCACCGTGAAAATGGAGAATGAAATCGAACCCTGAAGGTCAAAACCCTAACCCTAAGAATTTAATTTCGGATTGCACTCGCATTTGGGATTTTCAGATTAGGTTTCGAAATATGGGCTCATTTCTTGTCACTGGATTGGGCTGGGTTAAGATTTTGGGCCCTGGGCTTCGATTAAATTATAAATTTAGTCCTTGTCT

Coding sequence (CDS)

ATGGCTTCCTTTGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCTCAGGTTGCAAGGCTGCCACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTTCTGCAAGGGTTCCAGTTGAAATGAGCTTCTGTGTGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCTGCATTGATGACTTCGATGCTTTCTGTTTCTCGACATAGTTATGGCTGGCTTTCAGAAGTGACTGGCTTGCAAACTTCATGA

Protein sequence

MASFAARAIFRSSSGSGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCVESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS
Homology
[Close]
BLAST of Lcy08g004390 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.9e-11
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 0 

Query: 6  ARAIFRSSSGSGCKAAT-LLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCVESML 65
          AR++ R++S     A+T   ++ A++AP    FR  ++R       R PVE+SFCVES+L
Sbjct: 10 ARSMLRAASSRSAAASTGRFASQAKSAPPL--FRATARRSPLLSPLRNPVELSFCVESLL 69

Query: 66 PFHSATSSALMTSMLSVSRHSYGWLSE 92
          P+HSAT+SALMTS LS+S  +YGWLS+
Sbjct: 70 PYHSATASALMTSKLSISGQTYGWLSD 94

[Close]
BLAST of Lcy08g004390 vs. ExPASy TrEMBL
Match: A0A1S3CB40 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGSGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFAARAIFRSSSG   K ATLLSAGARAAPARSPFRIASKRPFS  S R+P+EMSFCV
Sbjct: 1  MASFAARAIFRSSSG---KTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 99
          ESMLPFHSATSSALMTSMLSVS HSYGWLSEV+GLQTS
Sbjct: 61 ESMLPFHSATSSALMTSMLSVSPHSYGWLSEVSGLQTS 95

[Close]
BLAST of Lcy08g004390 vs. ExPASy TrEMBL
Match: A0A6J1I278 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.0e-34
Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGSGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFAARAI RSS G   +AATLLS G+RAAPARS FRIASKRPFSQC+ R+PVEMSFCV
Sbjct: 1  MASFAARAISRSSFG---RAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 99
          ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS
Sbjct: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 95

[Close]
BLAST of Lcy08g004390 vs. ExPASy TrEMBL
Match: A0A6J1GM36 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.4e-33
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGSGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFAARAI RSS G   KAATLLS G+RAAPARS FRIA+KRPFSQC+ R+PVEMS CV
Sbjct: 1  MASFAARAISRSSFG---KAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 99
          ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS
Sbjct: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 95

[Close]
BLAST of Lcy08g004390 vs. ExPASy TrEMBL
Match: A0A5A7TDD1 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003170 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.4e-32
Identity = 83/95 (87.37%), Postives = 85/95 (89.47%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGSGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFAARAIFRSSSG   KAATLLSAGARAAPARSPFRIASKRPFS  S R+P+EMSFCV
Sbjct: 1  MASFAARAIFRSSSG---KAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGL 96
          ESMLPFHSATSSALMTSMLSVS HSYGWLSE   L
Sbjct: 61 ESMLPFHSATSSALMTSMLSVSPHSYGWLSEAAFL 92

[Close]
BLAST of Lcy08g004390 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGSGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFAARAIFRSSSG   KAATLLSAGARAAPARSPFRIASKRPFS  S R+P+EMSFCV
Sbjct: 1  MASFAARAIFRSSSG---KAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSE 92
          ESMLPFHSATSSALMTSMLSVS HSYGWLSE
Sbjct: 61 ESMLPFHSATSSALMTSMLSVSPHSYGWLSE 88

[Close]
BLAST of Lcy08g004390 vs. NCBI nr
Match: XP_038887455.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 4.0e-36
Identity = 89/98 (90.82%), Postives = 91/98 (92.86%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGSGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFA RAIFRSSSG   KAATLLS GARAAPARSPFRIASKRPFSQCS R+PVEMSFCV
Sbjct: 1  MASFAGRAIFRSSSG---KAATLLSVGARAAPARSPFRIASKRPFSQCSVRIPVEMSFCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 99
          ESMLPFHSATSSALM SMLSVSRH+YGWLSEVTGLQTS
Sbjct: 61 ESMLPFHSATSSALMISMLSVSRHNYGWLSEVTGLQTS 95

[Close]
BLAST of Lcy08g004390 vs. NCBI nr
Match: XP_023554650.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 9.8e-35
Identity = 88/98 (89.80%), Postives = 90/98 (91.84%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGSGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFAARAI RSS G   KAATLLS GARAAPARSPFRIASKRP SQC+ R+PVEMSFCV
Sbjct: 1  MASFAARAISRSSFG---KAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 99
          ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS
Sbjct: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 95

[Close]
BLAST of Lcy08g004390 vs. NCBI nr
Match: XP_008459321.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 2.9e-34
Identity = 87/98 (88.78%), Postives = 90/98 (91.84%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGSGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFAARAIFRSSSG   K ATLLSAGARAAPARSPFRIASKRPFS  S R+P+EMSFCV
Sbjct: 1  MASFAARAIFRSSSG---KTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 99
          ESMLPFHSATSSALMTSMLSVS HSYGWLSEV+GLQTS
Sbjct: 61 ESMLPFHSATSSALMTSMLSVSPHSYGWLSEVSGLQTS 95

[Close]
BLAST of Lcy08g004390 vs. NCBI nr
Match: XP_022969309.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 153.7 bits (387), Expect = 8.3e-34
Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGSGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFAARAI RSS G   +AATLLS G+RAAPARS FRIASKRPFSQC+ R+PVEMSFCV
Sbjct: 1  MASFAARAISRSSFG---RAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 99
          ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS
Sbjct: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 95

[Close]
BLAST of Lcy08g004390 vs. NCBI nr
Match: XP_004148697.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 4.1e-33
Identity = 84/98 (85.71%), Postives = 90/98 (91.84%), Query Frame = 0 

Query: 1  MASFAARAIFRSSSGSGCKAATLLSAGARAAPARSPFRIASKRPFSQCSARVPVEMSFCV 60
          MASFAAR+IFRSSS    KAATLLSAGARAAPA SPFRIASKRPFS CS R+P+E+SFCV
Sbjct: 1  MASFAARSIFRSSS---AKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCV 60

Query: 61 ESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS 99
          ESMLPFHSATSSALMTSMLSVS HS+GWLSEV+GLQTS
Sbjct: 61 ESMLPFHSATSSALMTSMLSVSPHSFGWLSEVSGLQTS 95

[Close]
BLAST of Lcy08g004390 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 5  AARAIFRSSSGSGCKAATLLSAGARAAP--ARSPFRIASKRPFSQCSARVPVEMSFCVES 64
          AAR++FRS++      A   SAG +  P  AR+ FR+  + P +    R PVE+S CVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 MLPFHSATSSALMTSMLSVSRHSYGWL 90
          MLP+H+AT+SAL+ SMLSVSR   GW+
Sbjct: 63 MLPYHTATASALLNSMLSVSRR--GWI 87

[Close]
BLAST of Lcy08g004390 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 5  AARAIFRSSSGSGCKAATLLSAGARAAP--ARSPFRIASKRPFSQCSARVPVEMSFCVES 64
          AAR++FRS++      A   SAG +  P  AR+ FR+  + P +    R PVE+S CVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 MLPFHSATSSALMTSMLSVSRHSYGWL 90
          MLP+H+AT+SAL+ SMLSVSR   GW+
Sbjct: 63 MLPYHTATASALLNSMLSVSRR--GWI 87

[Close]
BLAST of Lcy08g004390 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 5  AARAIFRSSSGSGCKAATLLSAGARAAP--ARSPFRIASKRPFSQCSARVPVEMSFCVES 64
          AAR++FRS++      A   SAG +  P  AR+ FR+  + P +    R PVE+S CVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 MLPFHSATSSALMTSMLSVSRHSYGWL 90
          MLP+H+AT+SAL+ SMLSVSR   GW+
Sbjct: 63 MLPYHTATASALLNSMLSVSRR--GWI 87

[Close]
BLAST of Lcy08g004390 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 5  AARAIFRSSSGSGCKAATLLSAGARAAP--ARSPFRIASKRPFSQCSARVPVEMSFCVES 64
          AAR++FRS++      A   SAG +  P  AR+ FR+  + P +    R PVE+S CVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 MLPFHSATSSALMTSMLSVSRHSYGWL 90
          MLP+H+AT+SAL+ SMLSVSR   GW+
Sbjct: 63 MLPYHTATASALLNSMLSVSRR--GWI 87

[Close]
BLAST of Lcy08g004390 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). )

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 5  AARAIFRSSSGSGCKAATLLSAGARAAP--ARSPFRIASKRPFSQCSARVPVEMSFCVES 64
          AAR++FRS++      A   SAG +  P  AR+ FR+  + P +    R PVE+S CVE+
Sbjct: 3  AARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVET 62

Query: 65 MLPFHSATSSALMTSMLSVSRHSYGWL 90
          MLP+H+AT+SAL+ SMLSVSR   GW+
Sbjct: 63 MLPYHTATASALLNSMLSVSRR--GWI 87

The following BLAST results are available for this feature:
BLAST of Lcy08g004390 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93ZJ37.9e-1148.28Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
BLAST of Lcy08g004390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CB401.4e-3488.78protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1I2784.0e-3487.76protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1GM363.4e-3386.73protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A5A7TDD18.4e-3287.37Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
A0A5D3CTR81.1e-3190.11Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
BLAST of Lcy08g004390 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887455.14.0e-3690.82protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa his... [more]
XP_023554650.19.8e-3589.80protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_008459321.12.9e-3488.78PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ... [more]
XP_022969309.18.3e-3487.76protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_004148697.14.1e-3385.71protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucu... [more]
BLAST of Lcy08g004390 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G28395.23.3e-1248.28unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.13.3e-1248.28unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.33.3e-1248.28unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.43.3e-1248.28unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G28395.53.3e-1248.28unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033251Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrialPANTHERPTHR33156:SF48PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIALcoord: 3..91
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 3..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy08g004390.1Lcy08g004390.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000741 karyogamy
cellular_component GO:0016021 integral component of membrane