Tan0018568 (gene) Snake gourd v1

Overview


Name	Tan0018568
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG06: 7246253 .. 7247128 (+)
RNA-Seq Expression	Tan0018568
Synteny	Tan0018568

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATATGTACGAGAATACCAATCTTTTAATACCACGTTGGTGCATAGCACAGTTATCGTCGACGACATCAGTAGGATGAGTAGGGATTGTTTTAATGTTATCATTTTTGTGGATACAACATGTAATGAACATACTAGCAAGACAGGGATAGGGGTTGTTGTTCGTTTGGACGATGCAAGGTTAGTGGCGGCTATGGAAAATAGTCATGATTGTTTTATCAATCCTATCTATTCAGAGGCATTGACTCTCTATGATAGTCTGAAATTAGCTACACGTCTGGAGCTCAACAGGGTTCATTTCTTCTCTGATTCGTTGTCTCTCGTGGCTATAGTCAATAGTTTGCAGGTACCAACTACTGAGATCCAAAACTATATCTGTGACATTTGGTCTTTGAGACAGAGCATTGAAGAGGTTAAGTTTAGTCATACTAAAATATCTTTCAACACTACAGTACATGTGTTGGCTAAGAAAAGTGTATTTGGTTATGTGGGCCTTTGAAATTCTCATTTTCCTAGTTGGATCTTTCAGACGATTTGGTCTGAATATGAGAGTCCTCCTTTGTAGCCTCTTTAAGATTTTAATGAAGTCCATTATTTCTCAAAAAAAAAAAAAAAATCACAATCTAATTGGTTTGGTGGGTTAAATAATTTTGTTTTCTCCCTCTATTTCTAAACCAGTGGTGCCAAAAGCCCAACTCCAATTGTTATAGTCTCAGTTGCATATAGCCAAGCTAAGGGCATGTAATTAAAGAGAAAAACAAGAATATAATGATGGTGAATGATCGATTTTTACCTAATATAATTAACCTCATAGAGCATTTCGGGCCTCAAGTATTGGGTAGAAATTCAAGTGGCTGGAGCCACAGCAGAGTGA

mRNA sequence

ATGCAATATGTACGAGAATACCAATCTTTTAATACCACGTTGGTGCATAGCACAGTTATCGTCGACGACATCAGTAGGATGAGTAGGGATTGTTTTAATGTTATCATTTTTGTGGATACAACATGTAATGAACATACTAGCAAGACAGGGATAGGGGTTGTTGTTCGTTTGGACGATGCAAGGTTAGTGGCGGCTATGGAAAATAGTCATGATTGTTTTATCAATCCTATCTATTCAGAGGCATTGACTCTCTATGATAGTCTGAAATTAGCTACACGTCTGGAGCTCAACAGGGTTCATTTCTTCTCTGATTCGTTGTCTCTCGTGGCTATAGTCAATAGTTTGCAGAGCATTTCGGGCCTCAAGTATTGGGTAGAAATTCAAGTGGCTGGAGCCACAGCAGAGTGA

Coding sequence (CDS)

ATGCAATATGTACGAGAATACCAATCTTTTAATACCACGTTGGTGCATAGCACAGTTATCGTCGACGACATCAGTAGGATGAGTAGGGATTGTTTTAATGTTATCATTTTTGTGGATACAACATGTAATGAACATACTAGCAAGACAGGGATAGGGGTTGTTGTTCGTTTGGACGATGCAAGGTTAGTGGCGGCTATGGAAAATAGTCATGATTGTTTTATCAATCCTATCTATTCAGAGGCATTGACTCTCTATGATAGTCTGAAATTAGCTACACGTCTGGAGCTCAACAGGGTTCATTTCTTCTCTGATTCGTTGTCTCTCGTGGCTATAGTCAATAGTTTGCAGAGCATTTCGGGCCTCAAGTATTGGGTAGAAATTCAAGTGGCTGGAGCCACAGCAGAGTGA

Protein sequence

MQYVREYQSFNTTLVHSTVIVDDISRMSRDCFNVIIFVDTTCNEHTSKTGIGVVVRLDDARLVAAMENSHDCFINPIYSEALTLYDSLKLATRLELNRVHFFSDSLSLVAIVNSLQSISGLKYWVEIQVAGATAE

Homology

[Close]

BLAST of Tan0018568 vs. NCBI nr
Match: XP_022142956.1 (uncharacterized protein LOC111012950 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-05
Identity = 31/92 (33.70%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 36  IFVDTTCNEHTSKTGIGVVVRLDDARLVAAMENSHDCFINPIYSEALTLYDSLKLATRLE 95
           I VD  C +H  +T IG+V R +  +++AA     + + +P+ +E+L L + L+LA  L 
Sbjct: 35  INVDVACKKHQFRTAIGIVCRNEKGQILAAASRRMEAYHDPLMAESLALLEGLRLADHLN 94

Query: 96  LNRVHFFSDSLSLVAIVNSLQ-SISGLKYWVE 127
           + +V F SDSL L+ ++     S  G   W+E
Sbjct: 95  IQQVQFESDSLQLINLLTEDPISWCGSNVWLE 126

[Close]

BLAST of Tan0018568 vs. ExPASy TrEMBL
Match: A0A6J1CNR4 (uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012950 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-05
Identity = 31/92 (33.70%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 36  IFVDTTCNEHTSKTGIGVVVRLDDARLVAAMENSHDCFINPIYSEALTLYDSLKLATRLE 95
           I VD  C +H  +T IG+V R +  +++AA     + + +P+ +E+L L + L+LA  L 
Sbjct: 35  INVDVACKKHQFRTAIGIVCRNEKGQILAAASRRMEAYHDPLMAESLALLEGLRLADHLN 94

Query: 96  LNRVHFFSDSLSLVAIVNSLQ-SISGLKYWVE 127
           + +V F SDSL L+ ++     S  G   W+E
Sbjct: 95  IQQVQFESDSLQLINLLTEDPISWCGSNVWLE 126

The following BLAST results are available for this feature:

BLAST of Tan0018568 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0018568 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142956.1	2.9e-05	33.70	uncharacterized protein LOC111012950 [Momordica charantia]	[more]

BLAST of Tan0018568 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNR4	1.4e-05	33.70	uncharacterized protein LOC111012950 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of Tan0018568 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 32..131 e-value: 4.9E-6 score: 28.6
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 38..117 e-value: 8.2E-11 score: 41.8
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 34..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0018568.1	Tan0018568.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity