Lcy02g007910 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy02g007910
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	Chr02: 11530252 .. 11531089 (+)
RNA-Seq Expression	Lcy02g007910
Synteny	Lcy02g007910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACATTTCCTCTTCTGCAAATCAGCCAACCAATCAATCCGTTATTGATCTCTATGTCAATCCTTACTACCTTCATCAATCTAATGGAACAAATCTTGTTCTCGTTTCTGAATTGCTCACGGAGTCAAATTATACCTCCTGGAATCAAGCAATGATGATCGGTCTCACAGTGAAAAATAAGGTAGGATTTATTGATGGGTCTGTAACGCGTTCGACTAGTAATCTTCTTCGTTCTTGGACGATTTGCAATGGTGTGGTGAAAGCCTGGATTCTAAATACTCTTTCTAAAGAGAATCTCTGCTAGTATCAACTTCTCCGATTCTGCTCGTGATATGTGGCTCAATCTTCAGCAACGATATCAAAGAAAAAACCACCCGCGTATTTTTCAGTTATGGCGCGAAATCTCAAATCTGGTTCAAGATCAATTGTCCGTTACTGCCTATTTTGCGAAGCTCAAGACTCTCTGGAACGAATTGATATCTTATCGCCCTTCTTGCACCTGTGGTCTTTGTTCCTGCGGTGGCGTAAAAGATTTGGTGAAATATTTTGAAACAAAACATGTAATGGCCTTTTTAATGGGGCTTAATGAGTCTTTCGATCAACTTCGCACACAATTGCTATTAACTCGAGCCTTCTATTCTAAGAGTTTTTCGCTTGCTGCCCAAGAATTCGAACAACGAACTTCTTCATCCTCATCAACGAACAACGAACAACGAACACGGTTGACCGTTCCTACAAACTTCATGGATACCCACCTGGGTATCGGAATCAAAAGGCTAGTTCTACAAATTCAACTCCAGCCAAGGTCGATTCTACTGGAGTTCCCAACTTAA

mRNA sequence

ATGGCTGACATTTCCTCTTCTGCAAATCAGCCAACCAATCAATCCGTTATTGATCTCTATGTCAATCCTTACTACCTTCATCAATCTAATGGAACAAATCTTGTTCTCGTTTCTGAATTGCTCACGGAGTCAAATTATACCTCCTGGAATCAAGCAATGATGATCGGTCTCACAGTGAAAAATAAGTTATGGCGCGAAATCTCAAATCTGGTTCAAGATCAATTGTCCGTTACTGCCTATTTTGCGAAGCTCAAGACTCTCTGGAACGAATTGATATCTTATCGCCCTTCTTGCACCTGTGGTCTTTGTTCCTGCGGTGGCGTAAAAGATTTGGTGAAATATTTTGAAACAAAACATGTAATGGCCTTTTTAATGGGGCTTAATGAGTCTTTCGATCAACTTCGCACACAATTGCTATTAACTCGAGCCTTCTATTCTAAGAGTTTTTCGCTTGCTGCCCAAGAATTCGAACAACGAACTTCTTCATCCTCATCAACGAACAACGAACAACGAACACGGTTGACCGTTCCTACAAACTTCATGGATACCCACCTGGGTATCGGAATCAAAAGGCTAGTTCTACAAATTCAACTCCAGCCAAGGTCGATTCTACTGGAGTTCCCAACTTAA

Coding sequence (CDS)

ATGGCTGACATTTCCTCTTCTGCAAATCAGCCAACCAATCAATCCGTTATTGATCTCTATGTCAATCCTTACTACCTTCATCAATCTAATGGAACAAATCTTGTTCTCGTTTCTGAATTGCTCACGGAGTCAAATTATACCTCCTGGAATCAAGCAATGATGATCGGTCTCACAGTGAAAAATAAGTTATGGCGCGAAATCTCAAATCTGGTTCAAGATCAATTGTCCGTTACTGCCTATTTTGCGAAGCTCAAGACTCTCTGGAACGAATTGATATCTTATCGCCCTTCTTGCACCTGTGGTCTTTGTTCCTGCGGTGGCGTAAAAGATTTGGTGAAATATTTTGAAACAAAACATGTAATGGCCTTTTTAATGGGGCTTAATGAGTCTTTCGATCAACTTCGCACACAATTGCTATTAACTCGAGCCTTCTATTCTAAGAGTTTTTCGCTTGCTGCCCAAGAATTCGAACAACGAACTTCTTCATCCTCATCAACGAACAACGAACAACGAACACGGTTGACCGTTCCTACAAACTTCATGGATACCCACCTGGGTATCGGAATCAAAAGGCTAGTTCTACAAATTCAACTCCAGCCAAGGTCGATTCTACTGGAGTTCCCAACTTAA

Protein sequence

MADISSSANQPTNQSVIDLYVNPYYLHQSNGTNLVLVSELLTESNYTSWNQAMMIGLTVKNKLWREISNLVQDQLSVTAYFAKLKTLWNELISYRPSCTCGLCSCGGVKDLVKYFETKHVMAFLMGLNESFDQLRTQLLLTRAFYSKSFSLAAQEFEQRTSSSSSTNNEQRTRLTVPTNFMDTHLGIGIKRLVLQIQLQPRSILLEFPT

Homology

[Close]

BLAST of Lcy02g007910 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-34
Identity = 93/246 (37.80%), Postives = 131/246 (53.25%), Query Frame = 0


Query: 11  PTNQSVIDLYVNPYYLHQSNGTNLVLVSELLTESNYTSWNQAMMIGLTVKNK-------- 70
           P N  V++ + NPY+LH S+ T+LVLVS+LLT+ NYTSW+++++I LTVKNK        
Sbjct: 16  PMNPIVVEQHANPYFLHHSDNTSLVLVSDLLTDENYTSWSRSIVIALTVKNKIGFVDGSI 75

Query: 71  ------------------------------------------LW---------------- 130
                                                     +W                
Sbjct: 76  SRPTDGRLHSWIICNNVVISWIFNSLSKKISASVLFSDSAHEIWLDLKERFQRQNRPRIF 135

Query: 131 ---REISNLVQDQLSVTAYFAKLKTLWNELISYRPSCTCGLCSCGGVKDLVKYFETKHVM 186
              RE+SNL QDQLSVTAYF +LKTLW+EL  YRP+C+CG CS GGVK +  +++ ++VM
Sbjct: 136 QLRRELSNLTQDQLSVTAYFTRLKTLWSELALYRPACSCGRCSYGGVKSIEAHYQQEYVM 195

[Close]

BLAST of Lcy02g007910 vs. ExPASy TrEMBL
Match: A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.3e-33
Identity = 96/236 (40.68%), Postives = 123/236 (52.12%), Query Frame = 0


Query: 17  IDLYVNPYYLHQSNGTNLVLVSELLTESNYTSWNQAMMIGLTVKNK-------------- 76
           I+ Y NPY+LH S+ T+LVLVS+ LT  NYTSW+++M+I LTVKNK              
Sbjct: 21  IEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVGFVDGSIVRPTGD 80

Query: 77  ------------------------------------LW-------------------REI 136
                                               +W                   R++
Sbjct: 81  LLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLDLKERFEKQNRPRIFQLRRDL 140

Query: 137 SNLVQDQLSVTAYFAKLKTLWNELISYRPSCTCGLCSCGGVKDLVKYFETKHVMAFLMGL 182
           SNLVQDQLSV+AYF  LKTLW EL SY PSCT G CSCGGVK+++ + + +HVM FLMGL
Sbjct: 141 SNLVQDQLSVSAYFTLLKTLWTELNSYSPSCTFGRCSCGGVKEIIAFQQQEHVMCFLMGL 200

[Close]

BLAST of Lcy02g007910 vs. ExPASy TrEMBL
Match: A0A5J4ZHF9 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_017116 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 7.3e-33
Identity = 89/212 (41.98%), Postives = 124/212 (58.49%), Query Frame = 0


Query: 1   MADISSSANQPTNQSVIDLYVNPYYLHQSNGTNLVLVSELLTESNYTSWNQAMMIGLTVK 60
           M+D +S     +N S I+   NPYYLH S+    V VS+ LT  NYT+W++AM+I L+VK
Sbjct: 7   MSDSNSGERTNSNSSAIEEPSNPYYLHHSDSPGQVFVSQQLTGENYTNWSRAMLIALSVK 66

Query: 61  NKLW----------------------------REISNLVQDQLSVTAYFAKLKTLWNELI 120
           NKL                             RE+ NL Q+Q SV+ YF KLKT+W EL 
Sbjct: 67  NKLGFVDGSIPEPQDLRDRFQQRNGPRIFQLKRELMNLRQEQSSVSIYFTKLKTIWEELS 126

Query: 121 SYRPSCTCGLCSCGGVKDLVKYFETKHVMAFLMGLNESFDQLRTQLLLTRAF--YSKSFS 180
           +YRP+C+CG CSCGGVK+L  + + +++M+FLM L++SF Q+R QLLL       ++ FS
Sbjct: 127 NYRPNCSCGKCSCGGVKNLNNHHQMEYIMSFLMELDDSFSQVRGQLLLMDPIPPINRVFS 186

[Close]

BLAST of Lcy02g007910 vs. ExPASy TrEMBL
Match: A0A5J5C4X6 (Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_001883 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.7e-32
Identity = 82/177 (46.33%), Postives = 119/177 (67.23%), Query Frame = 0


Query: 1   MADISSSANQPTNQSVIDLYVNPYYLHQSNGTNLVLVSELLTESNYTSWNQAMMIGLTVK 60
           M+D +      +N+S I+   NPYYLH S+    VLVS+ LT  NYT+W++AM+I L+VK
Sbjct: 7   MSDSNFGERTNSNRSTIEEPSNPYYLHHSDSPGQVLVSQQLTGENYTNWSRAMLIALSVK 66

Query: 61  NKLWREISNL--VQDQLSVTAYFAKLKTLWNELISYRPSCTCGLCSCGGVKDLVKYFETK 120
            KL     ++   Q+Q SV+ YF KLKT+W EL +YRP+C+CG CSCGGVK++  + + +
Sbjct: 67  KKLGFVDGSIPEPQEQSSVSIYFTKLKTIWEELSNYRPNCSCGKCSCGGVKNINDHHQME 126

Query: 121 HVMAFLMGLNESFDQLRTQLLLTRAF--YSKSFSLAAQEFEQ-RTSSSSSTNNEQRT 173
           ++M+FLMGL++SF Q+R QLLL       ++ FSL  QE +Q RT+ SS ++N   T
Sbjct: 127 YIMSFLMGLDDSFSQVRGQLLLMDPMPPINRVFSLIVQEEQQRRTNPSSDSSNSTGT 183

[Close]

BLAST of Lcy02g007910 vs. ExPASy TrEMBL
Match: A0A5J5B2C5 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_029212 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.9e-29
Identity = 90/247 (36.44%), Postives = 126/247 (51.01%), Query Frame = 0


Query: 1   MADISSSANQPTNQSVIDLYVNPYYLHQSNGTNLVLVSELLTESNYTSWNQAMMIGLTVK 60
           M+D +S  +  +N+S I+   NPYYLH SN    VLVS+ LT  NYT+W++AM+I L+VK
Sbjct: 7   MSDSNSGEHTNSNRSTIEEPSNPYYLHHSNSPGQVLVSQQLTGENYTNWSRAMLIALSVK 66

Query: 61  NKL-----------------------------------------------------W--- 120
           NKL                                                     W   
Sbjct: 67  NKLGFVDGFIPEPQGTDNNLLDSWIRNNNIVISWILNSISKEISASIIFAAFAREIWLDL 126

Query: 121 ----------------REISNLVQDQLSVTAYFAKLKTLWNELISYRPSCTCGLCSCGGV 173
                           RE+ NL Q+Q SV+ YF K+KT+W EL +YRP+C+CG C CGGV
Sbjct: 127 RDRFQQRNGPRIFQLKRELMNLRQEQSSVSIYFTKVKTIWEELSNYRPNCSCGKCYCGGV 186

[Close]

BLAST of Lcy02g007910 vs. NCBI nr
Match: XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 6.1e-34
Identity = 93/246 (37.80%), Postives = 131/246 (53.25%), Query Frame = 0


Query: 11  PTNQSVIDLYVNPYYLHQSNGTNLVLVSELLTESNYTSWNQAMMIGLTVKNK-------- 70
           P N  V++ + NPY+LH S+ T+LVLVS+LLT+ NYTSW+++++I LTVKNK        
Sbjct: 16  PMNPIVVEQHANPYFLHHSDNTSLVLVSDLLTDENYTSWSRSIVIALTVKNKIGFVDGSI 75

Query: 71  ------------------------------------------LW---------------- 130
                                                     +W                
Sbjct: 76  SRPTDGRLHSWIICNNVVISWIFNSLSKKISASVLFSDSAHEIWLDLKERFQRQNRPRIF 135

Query: 131 ---REISNLVQDQLSVTAYFAKLKTLWNELISYRPSCTCGLCSCGGVKDLVKYFETKHVM 186
              RE+SNL QDQLSVTAYF +LKTLW+EL  YRP+C+CG CS GGVK +  +++ ++VM
Sbjct: 136 QLRRELSNLTQDQLSVTAYFTRLKTLWSELALYRPACSCGRCSYGGVKSIEAHYQQEYVM 195

[Close]

BLAST of Lcy02g007910 vs. NCBI nr
Match: XP_022152756.1 (uncharacterized protein LOC111020399 [Momordica charantia])

HSP 1 Score: 151.8 bits (382), Expect = 6.7e-33
Identity = 96/236 (40.68%), Postives = 123/236 (52.12%), Query Frame = 0


Query: 17  IDLYVNPYYLHQSNGTNLVLVSELLTESNYTSWNQAMMIGLTVKNK-------------- 76
           I+ Y NPY+LH S+ T+LVLVS+ LT  NYTSW+++M+I LTVKNK              
Sbjct: 21  IEQYTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVGFVDGSIVRPTGD 80

Query: 77  ------------------------------------LW-------------------REI 136
                                               +W                   R++
Sbjct: 81  LLHSWIICNNVVISWILNSLSKEISASILFSDSAREIWLDLKERFEKQNRPRIFQLRRDL 140

Query: 137 SNLVQDQLSVTAYFAKLKTLWNELISYRPSCTCGLCSCGGVKDLVKYFETKHVMAFLMGL 182
           SNLVQDQLSV+AYF  LKTLW EL SY PSCT G CSCGGVK+++ + + +HVM FLMGL
Sbjct: 141 SNLVQDQLSVSAYFTLLKTLWTELNSYSPSCTFGRCSCGGVKEIIAFQQQEHVMCFLMGL 200

[Close]

BLAST of Lcy02g007910 vs. NCBI nr
Match: XP_038875043.1 (uncharacterized protein LOC120067569 [Benincasa hispida])

HSP 1 Score: 151.4 bits (381), Expect = 8.8e-33
Identity = 93/221 (42.08%), Postives = 118/221 (53.39%), Query Frame = 0


Query: 15  SVIDLYVNPYYLHQSNGTNLVLVSELLTESNYTSWNQAMMIGLTVKNKL----------- 74
           S+++ Y NPY+LH  + T+LV +S LLTESNY SW+QAM I LTVKNKL           
Sbjct: 25  SILEQYQNPYFLHPLDSTSLVFISNLLTESNYNSWSQAMKIELTVKNKLGFINVEIPHPS 84

Query: 75  ---------------------------------------W-------------------R 134
                                                  W                    
Sbjct: 85  GELLSSWIICNGVVTAWILNSLSKEISTSINFSNSVQEIWVDPQERYQCKNRPRVFQLRH 144

Query: 135 EISNLVQDQLSVTAYFAKLKTLWNELISYRPSCTCGLCSCGGVKDLVKYFETKHVMAFLM 165
           EISNL+Q+Q SVTAY+ KLK LWNELISYRPSC+CG  +CG VK+L  YF+T++VMAFLM
Sbjct: 145 EISNLIQNQDSVTAYYTKLKMLWNELISYRPSCSCGKYTCGSVKNLQTYFQTEYVMAFLM 204

[Close]

BLAST of Lcy02g007910 vs. NCBI nr
Match: XP_038874906.1 (uncharacterized protein LOC120067409 [Benincasa hispida])

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-32
Identity = 90/211 (42.65%), Postives = 111/211 (52.61%), Query Frame = 0


Query: 5   SSSANQ-----PTNQSVIDLYVNPYYLHQSNGTNLVLVSELLTESNYTSWNQAMMIGLTV 64
           S S+NQ     P  QS +  Y   Y+LH S+ T+LVLVS+LLT+SNY+SW+Q+M +  TV
Sbjct: 18  SPSSNQFTTYAPLVQSFVKQYSCSYFLHHSDSTSLVLVSDLLTKSNYSSWSQSMTLSFTV 77

Query: 65  KNK--------------------------------------------------LW----- 124
           KNK                                                  +W     
Sbjct: 78  KNKMGFIDGTLPKPIGDLQNSWIICNSVVTTWIFNALSKKIAASVNFSDSTREIWLDLQQ 137

Query: 125 --------------REISNLVQDQLSVTAYFAKLKTLWNELISYRPSCTCGLCSCGGVKD 142
                         RE+SNLVQDQLSV AYF KLKT WNEL SY+P C+CG C+CGGVK+
Sbjct: 138 RYQSKKYPCIFQFHRELSNLVQDQLSVIAYFTKLKTAWNELASYQPICSCGRCTCGGVKE 197

[Close]

BLAST of Lcy02g007910 vs. NCBI nr
Match: KAA8517066.1 (hypothetical protein F0562_017116 [Nyssa sinensis])

HSP 1 Score: 150.6 bits (379), Expect = 1.5e-32
Identity = 89/212 (41.98%), Postives = 124/212 (58.49%), Query Frame = 0


Query: 1   MADISSSANQPTNQSVIDLYVNPYYLHQSNGTNLVLVSELLTESNYTSWNQAMMIGLTVK 60
           M+D +S     +N S I+   NPYYLH S+    V VS+ LT  NYT+W++AM+I L+VK
Sbjct: 7   MSDSNSGERTNSNSSAIEEPSNPYYLHHSDSPGQVFVSQQLTGENYTNWSRAMLIALSVK 66

Query: 61  NKLW----------------------------REISNLVQDQLSVTAYFAKLKTLWNELI 120
           NKL                             RE+ NL Q+Q SV+ YF KLKT+W EL 
Sbjct: 67  NKLGFVDGSIPEPQDLRDRFQQRNGPRIFQLKRELMNLRQEQSSVSIYFTKLKTIWEELS 126

Query: 121 SYRPSCTCGLCSCGGVKDLVKYFETKHVMAFLMGLNESFDQLRTQLLLTRAF--YSKSFS 180
           +YRP+C+CG CSCGGVK+L  + + +++M+FLM L++SF Q+R QLLL       ++ FS
Sbjct: 127 NYRPNCSCGKCSCGGVKNLNNHHQMEYIMSFLMELDDSFSQVRGQLLLMDPIPPINRVFS 186

The following BLAST results are available for this feature:

BLAST of Lcy02g007910 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy02g007910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNP7	3.0e-34	37.80	uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DIP8	3.3e-33	40.68	uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A5J4ZHF9	7.3e-33	41.98	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_017116 PE=4 SV=1	[more]
A0A5J5C4X6	4.7e-32	46.33	Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]
A0A5J5B2C5	4.9e-29	36.44	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_029212 PE=4 SV=1	[more]

BLAST of Lcy02g007910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154919.1	6.1e-34	37.80	uncharacterized protein LOC111022065 [Momordica charantia]	[more]
XP_022152756.1	6.7e-33	40.68	uncharacterized protein LOC111020399 [Momordica charantia]	[more]
XP_038875043.1	8.8e-33	42.08	uncharacterized protein LOC120067569 [Benincasa hispida]	[more]
XP_038874906.1	1.2e-32	42.65	uncharacterized protein LOC120067409 [Benincasa hispida]	[more]
KAA8517066.1	1.5e-32	41.98	hypothetical protein F0562_017116 [Nyssa sinensis]	[more]

BLAST of Lcy02g007910 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 27..63 e-value: 7.1E-8 score: 32.1
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 19..63
None	No IPR available	PANTHER	PTHR37610:SF53	SUBFAMILY NOT NAMED	coord: 65..112
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 65..112
None	No IPR available	PANTHER	PTHR37610:SF53	SUBFAMILY NOT NAMED	coord: 19..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy02g007910.1	Lcy02g007910.1	mRNA