IVF0017486 (gene) Melon (IVF77) v1

Overview


Name	IVF0017486
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr10: 18095020 .. 18095301 (-)
RNA-Seq Expression	IVF0017486
Synteny	IVF0017486

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAACAACAATTTAGTTCCCTTCCAAGTACCTCGACTTACGAAAGAAAATTATAGTAGTTGGTGTATTCGAATGAAAGCTCTACTTGGTTCACAAGATGTGTGGGACATTGTTAGTAATGGTTATGAAGAACCAGAAAGTGATGCAGCTTTAAATCAAGCTCAACGAGAAGCTTTACAAAATACAAGAAAAAAAGATCAAAAGGCTCTCACCATCATTCATCAAGCCATTGATGATAACAATTTTATGAAAATTTCTGGAGCAACTACTGCATATTAA

mRNA sequence

ATGGCAAACAACAATTTAGTTCCCTTCCAAGTACCTCGACTTACGAAAGAAAATTATAGTAGTTGGTGTATTCGAATGAAAGCTCTACTTGGTTCACAAGATGTGTGGGACATTGTTAGTAATGGTTATGAAGAACCAGAAAGTGATGCAGCTTTAAATCAAGCTCAACGAGAAGCTTTACAAAATACAAGAAAAAAAGATCAAAAGGCTCTCACCATCATTCATCAAGCCATTGATGATAACAATTTTATGAAAATTTCTGGAGCAACTACTGCATATTAA

Coding sequence (CDS)

ATGGCAAACAACAATTTAGTTCCCTTCCAAGTACCTCGACTTACGAAAGAAAATTATAGTAGTTGGTGTATTCGAATGAAAGCTCTACTTGGTTCACAAGATGTGTGGGACATTGTTAGTAATGGTTATGAAGAACCAGAAAGTGATGCAGCTTTAAATCAAGCTCAACGAGAAGCTTTACAAAATACAAGAAAAAAAGATCAAAAGGCTCTCACCATCATTCATCAAGCCATTGATGATAACAATTTTATGAAAATTTCTGGAGCAACTACTGCATATTAA

Protein sequence

MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREALQNTRKKDQKALTIIHQAIDDNNFMKISGATTAY

Homology

[Close]

BLAST of IVF0017486 vs. ExPASy TrEMBL
Match: A0A5D3CTU3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00790 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.4e-44
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
          MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 QNTRKKDQKALTIIHQAIDDNNFMKISGATTAY 94
          QNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAY 93

[Close]

BLAST of IVF0017486 vs. ExPASy TrEMBL
Match: A0A5A7V277 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00740 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.4e-44
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
          MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 QNTRKKDQKALTIIHQAIDDNNFMKISGATTAY 94
          QNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAY 93

[Close]

BLAST of IVF0017486 vs. ExPASy TrEMBL
Match: A0A5A7UDA0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001520 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.4e-44
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
          MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 QNTRKKDQKALTIIHQAIDDNNFMKISGATTAY 94
          QNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAY 93

[Close]

BLAST of IVF0017486 vs. ExPASy TrEMBL
Match: A0A5A7SLT1 (Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00380 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.4e-44
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
          MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 QNTRKKDQKALTIIHQAIDDNNFMKISGATTAY 94
          QNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAY 93

[Close]

BLAST of IVF0017486 vs. ExPASy TrEMBL
Match: A0A5A7TA92 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00320 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.2e-43
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
          MANNNLVP QVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL
Sbjct: 1  MANNNLVPLQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 QNTRKKDQKALTIIHQAIDDNNFMKISGATTAY 94
          QNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAY 93

[Close]

BLAST of IVF0017486 vs. NCBI nr
Match: KAA0051409.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (470), Expect = 1.26e-55
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
          MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 QNTRKKDQKALTIIHQAIDDNNFMKISGATTAY 93
          QNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAY 93

[Close]

BLAST of IVF0017486 vs. NCBI nr
Match: XP_008456214.1 (PREDICTED: uncharacterized protein LOC103496217, partial [Cucumis melo])

HSP 1 Score: 182 bits (461), Expect = 2.50e-54
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
          MANNNLVP QVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDA+LNQAQREAL
Sbjct: 2  MANNNLVPLQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDASLNQAQREAL 61

Query: 61 QNTRKKDQKALTIIHQAIDDNNFMKISGATTAY 93
          QNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Sbjct: 62 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAY 94

[Close]

BLAST of IVF0017486 vs. NCBI nr
Match: KAA0038956.1 (copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 183 bits (464), Expect = 4.91e-53
Identity = 91/93 (97.85%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
          MANNNLVP QVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL
Sbjct: 1  MANNNLVPLQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 QNTRKKDQKALTIIHQAIDDNNFMKISGATTAY 93
          QNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAY 93

[Close]

BLAST of IVF0017486 vs. NCBI nr
Match: KAA0026102.1 (putative copia-type polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (470), Expect = 4.70e-52
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
          MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 QNTRKKDQKALTIIHQAIDDNNFMKISGATTAY 93
          QNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAY 93

[Close]

BLAST of IVF0017486 vs. NCBI nr
Match: TYK13816.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 185 bits (470), Expect = 5.14e-52
Identity = 92/93 (98.92%), Postives = 92/93 (98.92%), Query Frame = 0


Query: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
          MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL
Sbjct: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60

Query: 61 QNTRKKDQKALTIIHQAIDDNNFMKISGATTAY 93
          QNTRKKDQKALTIIHQAIDDNNF KISGATTAY
Sbjct: 61 QNTRKKDQKALTIIHQAIDDNNFEKISGATTAY 93

[Close]

BLAST of IVF0017486 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-24
Identity = 49/92 (53.26%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 1  MANNNLVPFQVPRLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDAALNQAQREAL 60
          MA+NN VPFQVP LTK NY +W +RMKA+LG+ DVW+IV  G+ EPE++ +L+Q Q++ L
Sbjct: 1  MASNN-VPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGL 60

Query: 61 QNTRKKDQKALTIIHQAIDDNNFMKISGATTA 93
          +++RK+D+KAL +I+Q +D++ F K+  AT+A
Sbjct: 61 RDSRKRDKKALCLIYQGLDEDTFEKVVEATSA 91

The following BLAST results are available for this feature:

BLAST of IVF0017486 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017486 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CTU3	2.4e-44	98.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7V277	2.4e-44	98.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UDA0	2.4e-44	98.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SLT1	2.4e-44	98.92	Putative copia-type polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7TA92	1.2e-43	97.85	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00320 P...	[more]

BLAST of IVF0017486 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051409.1	1.26e-55	98.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_008456214.1	2.50e-54	96.77	PREDICTED: uncharacterized protein LOC103496217, partial [Cucumis melo]	[more]
KAA0038956.1	4.91e-53	97.85	copia protein [Cucumis melo var. makuwa]	[more]
KAA0026102.1	4.70e-52	98.92	putative copia-type polyprotein [Cucumis melo var. makuwa]	[more]
TYK13816.1	5.14e-52	98.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of IVF0017486 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48720.1	1.6e-24	53.26	unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 14..40 e-value: 1.4E-10 score: 40.6
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 13..90
None	No IPR available	PANTHER	PTHR37610:SF17	ZINC FINGER, CCHC-TYPE, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 13..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017486.1	IVF0017486.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding