Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCAATATGGCCAACTTTCACACCTCTAAATCCGATTACGACCACCACCACCACCACCACCGCCGTCACCGCAACCACCACCACTGCAAACACCACCCAAACCACCACCAATCTCCCGGTGTTTGTTCTCTATGTTTAACCGAAAAGCTCTCGCGGATTCTCTCCACCGCCGGTTCATCGCGTAATAAAATCTCTAGTTCTCTTTCTTCTTCTTGTTCCTCTTCTTATTACTCCTCTTGTTCCTCTTCTTCTTCTTCTTGTTCTTCTTCGCCGAAGCCTTACAATTATTACAATTCGGATAATCATCGTCGTCGTAAGAAGGCTTTTGTGTTGTTTTCTGCGTCTTCGATCTTTAAGAAGAGTAAATCGATGGCGAGATTGAAACGAGGAACGACAACGGAGAGTGATTGTGGAAAGAAGAGTAATAATAATGACTTAGGGTTTTGGTCGAGGTTTCTGAATCGACCGAGACCGAAGAGGATGGAATTTCAGGATGTTTTGATGCGTTCGAGAACTGTTGTACACAGGAACGTGCATGGATGAACGTAATCGTCTTTTGAAGATTCGCTAAGATTTTATGATTATTTCTTCATTTTTTTGTTTCCACTTAAACAGATGCAATTAGATCGTTAGCGTTTGAGAAGAAG
mRNA sequence
CCCCAATATGGCCAACTTTCACACCTCTAAATCCGATTACGACCACCACCACCACCACCACCGCCGTCACCGCAACCACCACCACTGCAAACACCACCCAAACCACCACCAATCTCCCGGTGTTTGTTCTCTATGTTTAACCGAAAAGCTCTCGCGGATTCTCTCCACCGCCGGTTCATCGCGTAATAAAATCTCTAGTTCTCTTTCTTCTTCTTGTTCCTCTTCTTATTACTCCTCTTGTTCCTCTTCTTCTTCTTCTTGTTCTTCTTCGCCGAAGCCTTACAATTATTACAATTCGGATAATCATCGTCGTCGTAAGAAGGCTTTTGTGTTGTTTTCTGCGTCTTCGATCTTTAAGAAGAGTAAATCGATGGCGAGATTGAAACGAGGAACGACAACGGAGAGTGATTGTGGAAAGAAGAGTAATAATAATGACTTAGGGTTTTGGTCGAGGTTTCTGAATCGACCGAGACCGAAGAGGATGGAATTTCAGGATGTTTTGATGCGTTCGAGAACTGTTGTACACAGGAACGTGCATGGATGAACGTAATCGTCTTTTGAAGATTCGCTAAGATTTTATGATTATTTCTTCATTTTTTTGTTTCCACTTAAACAGATGCAATTAGATCGTTAGCGTTTGAGAAGAAG
Coding sequence (CDS)
ATGGCCAACTTTCACACCTCTAAATCCGATTACGACCACCACCACCACCACCACCGCCGTCACCGCAACCACCACCACTGCAAACACCACCCAAACCACCACCAATCTCCCGGTGTTTGTTCTCTATGTTTAACCGAAAAGCTCTCGCGGATTCTCTCCACCGCCGGTTCATCGCGTAATAAAATCTCTAGTTCTCTTTCTTCTTCTTGTTCCTCTTCTTATTACTCCTCTTGTTCCTCTTCTTCTTCTTCTTGTTCTTCTTCGCCGAAGCCTTACAATTATTACAATTCGGATAATCATCGTCGTCGTAAGAAGGCTTTTGTGTTGTTTTCTGCGTCTTCGATCTTTAAGAAGAGTAAATCGATGGCGAGATTGAAACGAGGAACGACAACGGAGAGTGATTGTGGAAAGAAGAGTAATAATAATGACTTAGGGTTTTGGTCGAGGTTTCTGAATCGACCGAGACCGAAGAGGATGGAATTTCAGGATGTTTTGATGCGTTCGAGAACTGTTGTACACAGGAACGTGCATGGATGA
Protein sequence
MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRNKISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSKSMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG
Homology
BLAST of IVF0026883 vs. ExPASy TrEMBL
Match:
A0A1S3CQP1 (SKI/DACH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103503688 PE=4 SV=1)
HSP 1 Score: 335.5 bits (859), Expect = 1.4e-88
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN
Sbjct: 1 MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
Query: 61 KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK
Sbjct: 61 KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
Query: 121 SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 179
SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG
Sbjct: 121 SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 178
BLAST of IVF0026883 vs. ExPASy TrEMBL
Match:
A0A0A0LJL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889870 PE=4 SV=1)
HSP 1 Score: 240.4 bits (612), Expect = 5.9e-60
Identity = 142/180 (78.89%), Postives = 153/180 (85.00%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
MANFH+SKSD D H R+ HHHC+ HPNHHQSPGVCSLCLTEKLSRI++ A SSRN
Sbjct: 1 MANFHSSKSDVD---HRRTRNHRHHHCQRHPNHHQSPGVCSLCLTEKLSRIIAPAASSRN 60
Query: 61 KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
KIS+SLSSS SSSYYSSCSS+SSS SSSPK Y YYNSDNH R+K +FSASSIFKKSK
Sbjct: 61 KISNSLSSSSSSSYYSSCSSASSSSSSSPKLYGYYNSDNHHPRRKTAFVFSASSIFKKSK 120
Query: 121 SMARLKRG-TTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHR-NVHG 179
+MARLKRG TTTESDCGKKSNN DLGFWSRFLNR R KRMEFQ+VLMRSRTVV R NVHG
Sbjct: 121 TMARLKRGITTTESDCGKKSNNTDLGFWSRFLNRHRLKRMEFQEVLMRSRTVVQRNNVHG 177
BLAST of IVF0026883 vs. ExPASy TrEMBL
Match:
A0A6J1IHL9 (uncharacterized protein LOC111476165 OS=Cucurbita maxima OX=3661 GN=LOC111476165 PE=4 SV=1)
HSP 1 Score: 164.9 bits (416), Expect = 3.2e-37
Identity = 118/181 (65.19%), Postives = 130/181 (71.82%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
MANFH SKSDYD + CK HP HHQSPGVCSLCL EKLS+I+S +S
Sbjct: 1 MANFHKSKSDYD----------DRRRCKRHPKHHQSPGVCSLCLAEKLSQIVS--ATSSR 60
Query: 61 KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
K+S SLSSSCSSSYYSS +SS SSCSS PY YN+D R+KAFV FSASSIFKKS+
Sbjct: 61 KVSDSLSSSCSSSYYSS-ASSCSSCSSPNPPYG-YNTD----RRKAFV-FSASSIFKKSR 120
Query: 121 SMA---RLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVH 179
SMA RLKR TESD GK SN LGFWSRFL RPR K MEF++VLM SRTVV R+VH
Sbjct: 121 SMAFAPRLKR--ETESDSGKNSN---LGFWSRFLRRPRRKIMEFEEVLMHSRTVVQRDVH 157
BLAST of IVF0026883 vs. ExPASy TrEMBL
Match:
A0A6J1FD38 (uncharacterized protein LOC111443018 OS=Cucurbita moschata OX=3662 GN=LOC111443018 PE=4 SV=1)
HSP 1 Score: 164.5 bits (415), Expect = 4.1e-37
Identity = 116/181 (64.09%), Postives = 131/181 (72.38%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
MANFH SKSDYD + CK HP HHQSPGVCSLCL EKLS+I+ST S
Sbjct: 1 MANFHRSKSDYD----------DRRRCKRHPKHHQSPGVCSLCLAEKLSQIVST--KSSR 60
Query: 61 KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
K+S SLSSSCS+SYYSS +SS SSCSS PY YN+D R+KAFV FSASSIFKKS+
Sbjct: 61 KVSDSLSSSCSTSYYSS-ASSCSSCSSPNPPYG-YNTD----RRKAFV-FSASSIFKKSR 120
Query: 121 SMA---RLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVH 179
SMA RL+RG TESD GK NN+LGFWS+ L RPR K MEF++VLM SRTVV R+VH
Sbjct: 121 SMAFAPRLRRG--TESDSGK---NNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVH 157
BLAST of IVF0026883 vs. ExPASy TrEMBL
Match:
A0A6J1FKF2 (uncharacterized protein LOC111446076 OS=Cucurbita moschata OX=3662 GN=LOC111446076 PE=4 SV=1)
HSP 1 Score: 134.4 bits (337), Expect = 4.6e-28
Identity = 110/184 (59.78%), Postives = 122/184 (66.30%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
MAN H SKSDYD RRHR CK HP H QSPGVCSLCLTEKLS+ILS SSR
Sbjct: 1 MANLHKSKSDYD----DLRRHRRCCCCKRHPKHRQSPGVCSLCLTEKLSQILSATTSSR- 60
Query: 61 KISSSLSSSCSSSY-YSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKS 120
KIS SLSSS S SY Y S SS SSCSS +PY+ KA +ASSI+KKS
Sbjct: 61 KISDSLSSSSSDSYSYYSSVSSCSSCSSPNRPYD-----------KA----TASSIYKKS 120
Query: 121 KSMA---RLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRT--VVHR 179
+SMA R +RG T+SD GKKS+ LGFWSRFLNRPR KRME ++ LM SR+ VV
Sbjct: 121 RSMAFASRFRRG--TDSDSGKKSH---LGFWSRFLNRPRRKRMELEEALMHSRSSAVVQG 159
BLAST of IVF0026883 vs. NCBI nr
Match:
XP_008466205.1 (PREDICTED: SKI/DACH domain-containing protein 1 [Cucumis melo])
HSP 1 Score: 331 bits (849), Expect = 4.76e-114
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN
Sbjct: 1 MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
Query: 61 KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK
Sbjct: 61 KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
Query: 121 SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 178
SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG
Sbjct: 121 SMARLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVHG 178
BLAST of IVF0026883 vs. NCBI nr
Match:
XP_011652564.1 (uncharacterized protein LOC105435032 [Cucumis sativus])
HSP 1 Score: 238 bits (608), Expect = 2.40e-77
Identity = 145/182 (79.67%), Postives = 155/182 (85.16%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHHRRHRNH--HHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSS 60
MANFH+SKSD DH RR RNH HHC+ HPNHHQSPGVCSLCLTEKLSRI++ A SS
Sbjct: 1 MANFHSSKSDVDH-----RRTRNHRHHHCQRHPNHHQSPGVCSLCLTEKLSRIIAPAASS 60
Query: 61 RNKISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKK 120
RNKIS+SLSSS SSSYYSSCSS+SSS SSSPK Y YYNSDNH R+K +FSASSIFKK
Sbjct: 61 RNKISNSLSSSSSSSYYSSCSSASSSSSSSPKLYGYYNSDNHHPRRKTAFVFSASSIFKK 120
Query: 121 SKSMARLKRG-TTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRN-V 178
SK+MARLKRG TTTESDCGKKSNN DLGFWSRFLNR R KRMEFQ+VLMRSRTVV RN V
Sbjct: 121 SKTMARLKRGITTTESDCGKKSNNTDLGFWSRFLNRHRLKRMEFQEVLMRSRTVVQRNNV 177
BLAST of IVF0026883 vs. NCBI nr
Match:
KAE8651391.1 (hypothetical protein Csa_002099 [Cucumis sativus])
HSP 1 Score: 238 bits (608), Expect = 1.33e-75
Identity = 145/182 (79.67%), Postives = 155/182 (85.16%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHHRRHRNH--HHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSS 60
MANFH+SKSD DH RR RNH HHC+ HPNHHQSPGVCSLCLTEKLSRI++ A SS
Sbjct: 125 MANFHSSKSDVDH-----RRTRNHRHHHCQRHPNHHQSPGVCSLCLTEKLSRIIAPAASS 184
Query: 61 RNKISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKK 120
RNKIS+SLSSS SSSYYSSCSS+SSS SSSPK Y YYNSDNH R+K +FSASSIFKK
Sbjct: 185 RNKISNSLSSSSSSSYYSSCSSASSSSSSSPKLYGYYNSDNHHPRRKTAFVFSASSIFKK 244
Query: 121 SKSMARLKRG-TTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRN-V 178
SK+MARLKRG TTTESDCGKKSNN DLGFWSRFLNR R KRMEFQ+VLMRSRTVV RN V
Sbjct: 245 SKTMARLKRGITTTESDCGKKSNNTDLGFWSRFLNRHRLKRMEFQEVLMRSRTVVQRNNV 301
BLAST of IVF0026883 vs. NCBI nr
Match:
XP_038899400.1 (uncharacterized protein LOC120086706 [Benincasa hispida])
HSP 1 Score: 174 bits (442), Expect = 2.86e-52
Identity = 132/183 (72.13%), Postives = 137/183 (74.86%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILS--TAGSS 60
MANFH SKSDYDHH R RNH CK HP HHQSPGVCSLCLTEKLSRILS T SS
Sbjct: 1 MANFHKSKSDYDHH-----RRRNHC-CKRHPKHHQSPGVCSLCLTEKLSRILSAATTTSS 60
Query: 61 RNKISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKK 120
K S SLSSS SSSYYSS SSSSS CS SP Y +YN+D RRK AFV FSASSIFKK
Sbjct: 61 SRKTSDSLSSSYSSSYYSSASSSSS-CS-SPNLY-HYNTD---RRKTAFV-FSASSIFKK 120
Query: 121 SKSMARLK---RGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRN 178
SKSMA + RG T ES+ KKSN LGFWSRFLNRPR KRMEFQDVLM SRT+V RN
Sbjct: 121 SKSMAAIVPRLRGRT-ESESEKKSN---LGFWSRFLNRPRRKRMEFQDVLMHSRTIVERN 166
BLAST of IVF0026883 vs. NCBI nr
Match:
KAG7024556.1 (hypothetical protein SDJN02_13373, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 162 bits (409), Expect = 2.19e-47
Identity = 119/181 (65.75%), Postives = 131/181 (72.38%), Query Frame = 0
Query: 1 MANFHTSKSDYDHHHHHHRRHRNHHHCKHHPNHHQSPGVCSLCLTEKLSRILSTAGSSRN 60
MANFH SKSDYD R R CK HP HHQSPGVCSLCL EKLS+I+ST S
Sbjct: 1 MANFHRSKSDYD------DRRR----CKRHPKHHQSPGVCSLCLAEKLSQIVSTKSS--R 60
Query: 61 KISSSLSSSCSSSYYSSCSSSSSSCSSSPKPYNYYNSDNHRRRKKAFVLFSASSIFKKSK 120
K+S SLSSSCSSSYYSS SS SS CSS PY YN+D R+KAFV FSASSIFKKS+
Sbjct: 61 KVSDSLSSSCSSSYYSSASSCSS-CSSPNPPYG-YNTD----RRKAFV-FSASSIFKKSR 120
Query: 121 SMA---RLKRGTTTESDCGKKSNNNDLGFWSRFLNRPRPKRMEFQDVLMRSRTVVHRNVH 178
SMA RL+RGT ESD GK NN+LGFWS+ L RPR K MEF++VLM SRTVV R+VH
Sbjct: 121 SMAFAPRLRRGT--ESDSGK---NNNLGFWSKILRRPRRKIMEFEEVLMHSRTVVQRDVH 157
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3CQP1 | 1.4e-88 | 100.00 | SKI/DACH domain-containing protein 1 OS=Cucumis melo OX=3656 GN=LOC103503688 PE=... | [more] |
A0A0A0LJL6 | 5.9e-60 | 78.89 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889870 PE=4 SV=1 | [more] |
A0A6J1IHL9 | 3.2e-37 | 65.19 | uncharacterized protein LOC111476165 OS=Cucurbita maxima OX=3661 GN=LOC111476165... | [more] |
A0A6J1FD38 | 4.1e-37 | 64.09 | uncharacterized protein LOC111443018 OS=Cucurbita moschata OX=3662 GN=LOC1114430... | [more] |
A0A6J1FKF2 | 4.6e-28 | 59.78 | uncharacterized protein LOC111446076 OS=Cucurbita moschata OX=3662 GN=LOC1114460... | [more] |
Match Name | E-value | Identity | Description | |
XP_008466205.1 | 4.76e-114 | 100.00 | PREDICTED: SKI/DACH domain-containing protein 1 [Cucumis melo] | [more] |
XP_011652564.1 | 2.40e-77 | 79.67 | uncharacterized protein LOC105435032 [Cucumis sativus] | [more] |
KAE8651391.1 | 1.33e-75 | 79.67 | hypothetical protein Csa_002099 [Cucumis sativus] | [more] |
XP_038899400.1 | 2.86e-52 | 72.13 | uncharacterized protein LOC120086706 [Benincasa hispida] | [more] |
KAG7024556.1 | 2.19e-47 | 65.75 | hypothetical protein SDJN02_13373, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |