IVF0017462 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCTCATTAAAGATTATGACTGCACTATCACATACCACCTTGGGAAAGCCAATATCATAGCTGACGCGTTAAGCATAAAGATCCCCAGCCCAAGGAACAGAGGGAGAATGGCTCTATTAAGAGAACTAAAGGGCTTCAAAACAATACTAAAGGCAAGGACATCTGGAAACCTGATGGCGCGTTTTCAGGTGAAGCCTACGCTTTAG ATGAAGCTCATTAAAGATTATGACTGCACTATCACATACCACCTTGGGAAAGCCAATATCATAGCTGACGCGTTAAGCATAAAGATCCCCAGCCCAAGGAACAGAGGGAGAATGGCTCTATTAAGAGAACTAAAGGGCTTCAAAACAATACTAAAGGCAAGGACATCTGGAAACCTGATGGCGCGTTTTCAGGTGAAGCCTACGCTTTAG ATGAAGCTCATTAAAGATTATGACTGCACTATCACATACCACCTTGGGAAAGCCAATATCATAGCTGACGCGTTAAGCATAAAGATCCCCAGCCCAAGGAACAGAGGGAGAATGGCTCTATTAAGAGAACTAAAGGGCTTCAAAACAATACTAAAGGCAAGGACATCTGGAAACCTGATGGCGCGTTTTCAGGTGAAGCCTACGCTTTAG MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLMARFQVKPTL Homology
BLAST of IVF0017462 vs. ExPASy TrEMBL
Match: A0A5A7UWA6 (CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001920 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 7.2e-30 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
BLAST of IVF0017462 vs. ExPASy TrEMBL
Match: A0A5A7VIK8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002810 PE=4 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 1.7e-18 Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0
BLAST of IVF0017462 vs. ExPASy TrEMBL
Match: A0A5D3DMM3 (CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001300 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 7.8e-16 Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 0
BLAST of IVF0017462 vs. ExPASy TrEMBL
Match: A0A5A7UMR3 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00250 PE=4 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 8.0e-13 Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 0
BLAST of IVF0017462 vs. ExPASy TrEMBL
Match: A0A5A7UKK4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1371G00030 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 3.1e-12 Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 0
BLAST of IVF0017462 vs. NCBI nr
Match: KAA0058456.1 (CCHC-type integrase [Cucumis melo var. makuwa] >TYK07290.1 CCHC-type integrase [Cucumis melo var. makuwa]) HSP 1 Score: 137 bits (344), Expect = 1.66e-40 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0
BLAST of IVF0017462 vs. NCBI nr
Match: KAA0067194.1 (polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 99.4 bits (246), Expect = 2.84e-25 Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 0
BLAST of IVF0017462 vs. NCBI nr
Match: KAA0059914.1 (CCHC-type integrase [Cucumis melo var. makuwa] >TYK24861.1 CCHC-type integrase [Cucumis melo var. makuwa]) HSP 1 Score: 90.5 bits (223), Expect = 7.64e-21 Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 0
BLAST of IVF0017462 vs. NCBI nr
Match: KAA0054749.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]) HSP 1 Score: 80.5 bits (197), Expect = 8.03e-17 Identity = 41/69 (59.42%), Postives = 53/69 (76.81%), Query Frame = 0
BLAST of IVF0017462 vs. NCBI nr
Match: KAA0036590.1 (polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 77.0 bits (188), Expect = 4.63e-16 Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|