Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTGCAATTTGAACAAGTATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTGACTATCCAATCAGACTCTTCGAGTCTTCCCCCTATTCCTTCAACCGCATTGTTGCGTCCCTCTGGACCAACAACTCCAAATAAGCGTGTCGCTTCCCCGGCCGCTTCTTCCTCAAGGTCTGCAATACCAAGGAATCCTTCCTCGTATTCTCAAATCGTCAGGCCCAAGATTTTCCAGCCAAGACCTCCAATTAATGGTTATTTCACCAAAACCACAATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAGGATCTTTCAAAAACCAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCATCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCATGACTATACAAAGGCATGGTATATTGTATTTTGGCTCCATGCTTAGAATCATTCTTGGTTTGTGACATTTTGCAAGCAAGCTTACAAAATGCACTTCCCAAACTGGTTTCAAAATTGGTGGATGTATTTTGGACTCTCCGAGGAAATATTTCCGGTAGAAGTTCAACGTTCGTACCACCTTTTTCAACAAAGTATCTATTCGTCGCCTCTTTCAAAGACGTTTAGGTTTGCTTTGTATTTCCAAATTCTCTGGATCTTTTGCTGGAATTTCCAGCTAGGACCTTTAGGAAACTTCAAAGCCCTGAGTAAATCCCTCAGGATCAAATGGTGGGAAAAGTTCAATTACTCCCATCTTGAAGTCAACAAGATCAAGGATTGGTTTAAAGCCAATATCCATCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTCCTCCTCACCAAAAATGCAGTCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAACAACGTCGTTGTAAACCTCTCAGATGATAACGACGATTTACCAGAGGACGTTTCTCCAGCCTCCGTCAATAATGTCGATGACCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACTCAACCTTATTAG
mRNA sequence
ATGGATTTGCAATTTGAACAAGTATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTGACTATCCAATCAGACTCTTCGAGTCTTCCCCCTATTCCTTCAACCGCATTGTTGCGTCCCTCTGGACCAACAACTCCAAATAAGCGTGTCGCTTCCCCGGCCGCTTCTTCCTCAAGGTCTGCAATACCAAGGAATCCTTCCTCGTATTCTCAAATCGTCAGGCCCAAGATTTTCCAGCCAAGACCTCCAATTAATGGTTATTTCACCAAAACCACAATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAGGATCTTTCAAAAACCAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCATCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCATGACTATACAAAGGCATGGATCAAATGGTGGGAAAAGTTCAATTACTCCCATCTTGAAGTCAACAAGATCAAGGATTGGTTTAAAGCCAATATCCATCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTCCTCCTCACCAAAAATGCAGTCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAACAACGTCGTTGTAAACCTCTCAGATGATAACGACGATTTACCAGAGGACGTTTCTCCAGCCTCCGTCAATAATGTCGATGACCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACTCAACCTTATTAG
Coding sequence (CDS)
ATGGATTTGCAATTTGAACAAGTATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTGACTATCCAATCAGACTCTTCGAGTCTTCCCCCTATTCCTTCAACCGCATTGTTGCGTCCCTCTGGACCAACAACTCCAAATAAGCGTGTCGCTTCCCCGGCCGCTTCTTCCTCAAGGTCTGCAATACCAAGGAATCCTTCCTCGTATTCTCAAATCGTCAGGCCCAAGATTTTCCAGCCAAGACCTCCAATTAATGGTTATTTCACCAAAACCACAATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAGGATCTTTCAAAAACCAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCATCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCATGACTATACAAAGGCATGGATCAAATGGTGGGAAAAGTTCAATTACTCCCATCTTGAAGTCAACAAGATCAAGGATTGGTTTAAAGCCAATATCCATCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTCCTCCTCACCAAAAATGCAGTCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAACAACGTCGTTGTAAACCTCTCAGATGATAACGACGATTTACCAGAGGACGTTTCTCCAGCCTCCGTCAATAATGTCGATGACCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACTCAACCTTATTAG
Protein sequence
MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYHDYTKAWIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEGLDINDPFLDTQPY
Homology
BLAST of IVF0026196.1 vs. ExPASy TrEMBL
Match:
A0A5A7T5B0 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE=4 SV=1)
HSP 1 Score: 604.7 bits (1558), Expect = 2.1e-169
Identity = 306/329 (93.01%), Postives = 308/329 (93.62%), Query Frame = 0
Query: 1 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67
Query: 61 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
IPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68 VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127
Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187
Query: 181 RKFSHPFKPPSYNYHDYTKAW-----------------IKWWEKFNYSHLEVNKIKDWFK 240
RKFSHPFKPPSYNY DYTKAW IKWWEKFNYSHLEVNKIKDWFK
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYILGPLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFK 247
Query: 241 ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSP 300
ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDL ED+SP
Sbjct: 248 ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISP 307
Query: 301 ASVNNVDDLDYDPYEGLDINDPFLDTQPY 313
AS+NNVDDLDYDPYEGLDINDPFLDTQPY
Sbjct: 308 ASINNVDDLDYDPYEGLDINDPFLDTQPY 336
BLAST of IVF0026196.1 vs. ExPASy TrEMBL
Match:
A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)
HSP 1 Score: 575.1 bits (1481), Expect = 1.8e-160
Identity = 308/412 (74.76%), Postives = 308/412 (74.76%), Query Frame = 0
Query: 1 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67
Query: 61 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127
Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187
Query: 181 RKFSHPFKPPSYNYHDYTKAW--------------------------------------- 240
RKFSHPFKPPSYNY DYTKAW
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247
Query: 241 ------------------------------------------------------------ 300
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307
Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 313
IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367
BLAST of IVF0026196.1 vs. ExPASy TrEMBL
Match:
A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)
HSP 1 Score: 575.1 bits (1481), Expect = 1.8e-160
Identity = 308/412 (74.76%), Postives = 309/412 (75.00%), Query Frame = 0
Query: 1 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67
Query: 61 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEP+FDGPSVQEVCSQIFPHGFN
Sbjct: 68 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPKFDGPSVQEVCSQIFPHGFN 127
Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187
Query: 181 RKFSHPFKPPSYNYHDYTKAW--------------------------------------- 240
RKFSHPFKPPSYNY DYTKAW
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247
Query: 241 ------------------------------------------------------------ 300
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307
Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 313
IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367
BLAST of IVF0026196.1 vs. ExPASy TrEMBL
Match:
A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)
HSP 1 Score: 573.5 bits (1477), Expect = 5.2e-160
Identity = 307/412 (74.51%), Postives = 307/412 (74.51%), Query Frame = 0
Query: 1 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67
Query: 61 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127
Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187
Query: 181 RKFSHPFKPPSYNYHDYTKAW--------------------------------------- 240
RKFSHPFKPPSYNY DYTKAW
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247
Query: 241 ------------------------------------------------------------ 300
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307
Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 313
IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367
BLAST of IVF0026196.1 vs. ExPASy TrEMBL
Match:
A0A5A7T975 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002220 PE=4 SV=1)
HSP 1 Score: 567.0 bits (1460), Expect = 4.9e-158
Identity = 293/313 (93.61%), Postives = 297/313 (94.89%), Query Frame = 0
Query: 1 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS
Sbjct: 8 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 67
Query: 61 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127
Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMF+G
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFLG 187
Query: 181 RKFSHPFKPPSYNYHDYTKAW-IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF 240
P N+ +K+ IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF
Sbjct: 188 ---------PLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF 247
Query: 241 LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEG 300
LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEG
Sbjct: 248 LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEG 307
Query: 301 LDINDPFLDTQPY 313
LDINDPFLDTQPY
Sbjct: 308 LDINDPFLDTQPY 311
BLAST of IVF0026196.1 vs. NCBI nr
Match:
KAA0038028.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 604 bits (1557), Expect = 4.01e-217
Identity = 306/329 (93.01%), Postives = 308/329 (93.62%), Query Frame = 0
Query: 1 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67
Query: 61 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
IPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68 VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127
Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187
Query: 181 RKFSHPFKPPSYNYHDYTKAW-----------------IKWWEKFNYSHLEVNKIKDWFK 240
RKFSHPFKPPSYNY DYTKAW IKWWEKFNYSHLEVNKIKDWFK
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYILGPLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFK 247
Query: 241 ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSP 300
ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDL ED+SP
Sbjct: 248 ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISP 307
Query: 301 ASVNNVDDLDYDPYEGLDINDPFLDTQPY 312
AS+NNVDDLDYDPYEGLDINDPFLDTQPY
Sbjct: 308 ASINNVDDLDYDPYEGLDINDPFLDTQPY 336
BLAST of IVF0026196.1 vs. NCBI nr
Match:
KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 574 bits (1480), Expect = 4.49e-204
Identity = 308/412 (74.76%), Postives = 308/412 (74.76%), Query Frame = 0
Query: 1 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67
Query: 61 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127
Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187
Query: 181 RKFSHPFKPPSYNYHDYTKAW--------------------------------------- 240
RKFSHPFKPPSYNY DYTKAW
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247
Query: 241 ------------------------------------------------------------ 300
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307
Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 312
IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367
BLAST of IVF0026196.1 vs. NCBI nr
Match:
KAA0068172.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 574 bits (1480), Expect = 4.49e-204
Identity = 308/412 (74.76%), Postives = 309/412 (75.00%), Query Frame = 0
Query: 1 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67
Query: 61 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEP+FDGPSVQEVCSQIFPHGFN
Sbjct: 68 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPKFDGPSVQEVCSQIFPHGFN 127
Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187
Query: 181 RKFSHPFKPPSYNYHDYTKAW--------------------------------------- 240
RKFSHPFKPPSYNY DYTKAW
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247
Query: 241 ------------------------------------------------------------ 300
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307
Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 312
IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367
BLAST of IVF0026196.1 vs. NCBI nr
Match:
KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 573 bits (1476), Expect = 1.83e-203
Identity = 307/412 (74.51%), Postives = 307/412 (74.51%), Query Frame = 0
Query: 1 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67
Query: 61 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127
Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187
Query: 181 RKFSHPFKPPSYNYHDYTKAW--------------------------------------- 240
RKFSHPFKPPSYNY DYTKAW
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247
Query: 241 ------------------------------------------------------------ 300
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307
Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 312
IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367
BLAST of IVF0026196.1 vs. NCBI nr
Match:
KAA0038025.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 566 bits (1458), Expect = 1.94e-202
Identity = 293/313 (93.61%), Postives = 297/313 (94.89%), Query Frame = 0
Query: 1 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS
Sbjct: 8 MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 67
Query: 61 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68 AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127
Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMF+G
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFLG 187
Query: 181 RKFSHPFKPPSYNYHDYTKAW-IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF 240
P N+ +K+ IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF
Sbjct: 188 ---------PLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF 247
Query: 241 LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEG 300
LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEG
Sbjct: 248 LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEG 307
Query: 301 LDINDPFLDTQPY 312
LDINDPFLDTQPY
Sbjct: 308 LDINDPFLDTQPY 311
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T5B0 | 2.1e-169 | 93.01 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE... | [more] |
A0A5A7UVN1 | 1.8e-160 | 74.76 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A5A7VIK9 | 1.8e-160 | 74.76 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
A0A5A7V6D1 | 5.2e-160 | 74.51 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
A0A5A7T975 | 4.9e-158 | 93.61 | Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36... | [more] |
Match Name | E-value | Identity | Description | |
KAA0038028.1 | 4.01e-217 | 93.01 | polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0056777.1 | 4.49e-204 | 74.76 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran... | [more] |
KAA0068172.1 | 4.49e-204 | 74.76 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] | [more] |
KAA0063832.1 | 1.83e-203 | 74.51 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] | [more] |
KAA0038025.1 | 1.94e-202 | 93.61 | Enzymatic polyprotein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |