IVF0026196 (gene) Melon (IVF77) v1

Overview


Name	IVF0026196
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposable element Tf2
Location	chr04: 13114129 .. 13115367 (-)
RNA-Seq Expression	IVF0026196
Synteny	IVF0026196

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGCAATTTGAACAAGTATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTGACTATCCAATCAGACTCTTCGAGTCTTCCCCCTATTCCTTCAACCGCATTGTTGCGTCCCTCTGGACCAACAACTCCAAATAAGCGTGTCGCTTCCCCGGCCGCTTCTTCCTCAAGGTCTGCAATACCAAGGAATCCTTCCTCGTATTCTCAAATCGTCAGGCCCAAGATTTTCCAGCCAAGACCTCCAATTAATGGTTATTTCACCAAAACCACAATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAGGATCTTTCAAAAACCAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCATCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCATGACTATACAAAGGCATGGTATATTGTATTTTGGCTCCATGCTTAGAATCATTCTTGGTTTGTGACATTTTGCAAGCAAGCTTACAAAATGCACTTCCCAAACTGGTTTCAAAATTGGTGGATGTATTTTGGACTCTCCGAGGAAATATTTCCGGTAGAAGTTCAACGTTCGTACCACCTTTTTCAACAAAGTATCTATTCGTCGCCTCTTTCAAAGACGTTTAGGTTTGCTTTGTATTTCCAAATTCTCTGGATCTTTTGCTGGAATTTCCAGCTAGGACCTTTAGGAAACTTCAAAGCCCTGAGTAAATCCCTCAGGATCAAATGGTGGGAAAAGTTCAATTACTCCCATCTTGAAGTCAACAAGATCAAGGATTGGTTTAAAGCCAATATCCATCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTCCTCCTCACCAAAAATGCAGTCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAACAACGTCGTTGTAAACCTCTCAGATGATAACGACGATTTACCAGAGGACGTTTCTCCAGCCTCCGTCAATAATGTCGATGACCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACTCAACCTTATTAG

mRNA sequence

ATGGATTTGCAATTTGAACAAGTATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTGACTATCCAATCAGACTCTTCGAGTCTTCCCCCTATTCCTTCAACCGCATTGTTGCGTCCCTCTGGACCAACAACTCCAAATAAGCGTGTCGCTTCCCCGGCCGCTTCTTCCTCAAGGTCTGCAATACCAAGGAATCCTTCCTCGTATTCTCAAATCGTCAGGCCCAAGATTTTCCAGCCAAGACCTCCAATTAATGGTTATTTCACCAAAACCACAATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAGGATCTTTCAAAAACCAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCATCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCATGACTATACAAAGGCATGGATCAAATGGTGGGAAAAGTTCAATTACTCCCATCTTGAAGTCAACAAGATCAAGGATTGGTTTAAAGCCAATATCCATCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTCCTCCTCACCAAAAATGCAGTCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAACAACGTCGTTGTAAACCTCTCAGATGATAACGACGATTTACCAGAGGACGTTTCTCCAGCCTCCGTCAATAATGTCGATGACCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACTCAACCTTATTAG

Coding sequence (CDS)

ATGGATTTGCAATTTGAACAAGTATCCAGGCGACGTCAAGGTTCTGCTCAAAGAACATTGACTATCCAATCAGACTCTTCGAGTCTTCCCCCTATTCCTTCAACCGCATTGTTGCGTCCCTCTGGACCAACAACTCCAAATAAGCGTGTCGCTTCCCCGGCCGCTTCTTCCTCAAGGTCTGCAATACCAAGGAATCCTTCCTCGTATTCTCAAATCGTCAGGCCCAAGATTTTCCAGCCAAGACCTCCAATTAATGGTTATTTCACCAAAACCACAATGGTTGATTTAACTATAGAACCAGAATTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATGGGTTCAATTTCTTGCCCGAGGATCTTTCAAAAACCAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCTGAAATTACTCATGTCCCAGATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCGTGTTCTCACTCCATCTTACTGGAAACAGGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACCCTCATACAATTACCATGACTATACAAAGGCATGGATCAAATGGTGGGAAAAGTTCAATTACTCCCATCTTGAAGTCAACAAGATCAAGGATTGGTTTAAAGCCAATATCCATCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTCCTCCTCACCAAAAATGCAGTCATGTCAACCCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAACAACGTCGTTGTAAACCTCTCAGATGATAACGACGATTTACCAGAGGACGTTTCTCCAGCCTCCGTCAATAATGTCGATGACCTTGACTATGACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACACTCAACCTTATTAG

Protein sequence

MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRSAIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVGRKFSHPFKPPSYNYHDYTKAWIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEGLDINDPFLDTQPY

Homology

[Close]

BLAST of IVF0026196 vs. ExPASy TrEMBL
Match: A0A5A7T5B0 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE=4 SV=1)

HSP 1 Score: 604.7 bits (1558), Expect = 2.1e-169
Identity = 306/329 (93.01%), Postives = 308/329 (93.62%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
            IPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYHDYTKAW-----------------IKWWEKFNYSHLEVNKIKDWFK 240
           RKFSHPFKPPSYNY DYTKAW                 IKWWEKFNYSHLEVNKIKDWFK
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYILGPLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFK 247

Query: 241 ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSP 300
           ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDL ED+SP
Sbjct: 248 ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISP 307

Query: 301 ASVNNVDDLDYDPYEGLDINDPFLDTQPY 313
           AS+NNVDDLDYDPYEGLDINDPFLDTQPY
Sbjct: 308 ASINNVDDLDYDPYEGLDINDPFLDTQPY 336

[Close]

BLAST of IVF0026196 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 1.8e-160
Identity = 308/412 (74.76%), Postives = 308/412 (74.76%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
           AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYHDYTKAW--------------------------------------- 240
           RKFSHPFKPPSYNY DYTKAW                                       
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307

Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 313
            IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367

[Close]

BLAST of IVF0026196 vs. ExPASy TrEMBL
Match: A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 1.8e-160
Identity = 308/412 (74.76%), Postives = 309/412 (75.00%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
           AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEP+FDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPKFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYHDYTKAW--------------------------------------- 240
           RKFSHPFKPPSYNY DYTKAW                                       
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307

Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 313
            IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367

[Close]

BLAST of IVF0026196 vs. ExPASy TrEMBL
Match: A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)

HSP 1 Score: 573.5 bits (1477), Expect = 5.2e-160
Identity = 307/412 (74.51%), Postives = 307/412 (74.51%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
           AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYHDYTKAW--------------------------------------- 240
           RKFSHPFKPPSYNY DYTKAW                                       
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307

Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 313
            IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367

[Close]

BLAST of IVF0026196 vs. ExPASy TrEMBL
Match: A0A5A7T975 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002220 PE=4 SV=1)

HSP 1 Score: 567.0 bits (1460), Expect = 4.9e-158
Identity = 293/313 (93.61%), Postives = 297/313 (94.89%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 67

Query: 61  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
           AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMF+G
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFLG 187

Query: 181 RKFSHPFKPPSYNYHDYTKAW-IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF 240
                    P  N+   +K+  IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF
Sbjct: 188 ---------PLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF 247

Query: 241 LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEG 300
           LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEG
Sbjct: 248 LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEG 307

Query: 301 LDINDPFLDTQPY 313
           LDINDPFLDTQPY
Sbjct: 308 LDINDPFLDTQPY 311

[Close]

BLAST of IVF0026196 vs. NCBI nr
Match: KAA0038028.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 604 bits (1557), Expect = 4.01e-217
Identity = 306/329 (93.01%), Postives = 308/329 (93.62%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
            IPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  VIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYHDYTKAW-----------------IKWWEKFNYSHLEVNKIKDWFK 240
           RKFSHPFKPPSYNY DYTKAW                 IKWWEKFNYSHLEVNKIKDWFK
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYILGPLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFK 247

Query: 241 ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSP 300
           ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDL ED+SP
Sbjct: 248 ANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISP 307

Query: 301 ASVNNVDDLDYDPYEGLDINDPFLDTQPY 312
           AS+NNVDDLDYDPYEGLDINDPFLDTQPY
Sbjct: 308 ASINNVDDLDYDPYEGLDINDPFLDTQPY 336

[Close]

BLAST of IVF0026196 vs. NCBI nr
Match: KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 574 bits (1480), Expect = 4.49e-204
Identity = 308/412 (74.76%), Postives = 308/412 (74.76%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
           AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYHDYTKAW--------------------------------------- 240
           RKFSHPFKPPSYNY DYTKAW                                       
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307

Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 312
            IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367

[Close]

BLAST of IVF0026196 vs. NCBI nr
Match: KAA0068172.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 574 bits (1480), Expect = 4.49e-204
Identity = 308/412 (74.76%), Postives = 309/412 (75.00%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
           AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEP+FDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPKFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYHDYTKAW--------------------------------------- 240
           RKFSHPFKPPSYNY DYTKAW                                       
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307

Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 312
            IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367

[Close]

BLAST of IVF0026196 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 573 bits (1476), Expect = 1.83e-203
Identity = 307/412 (74.51%), Postives = 307/412 (74.51%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKR ASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPAASSSRS 67

Query: 61  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
           AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 187

Query: 181 RKFSHPFKPPSYNYHDYTKAW--------------------------------------- 240
           RKFSHPFKPPSYNY DYTKAW                                       
Sbjct: 188 RKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGL 247

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 248 SEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSKSL 307

Query: 301 -IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLVGASTQQEFN 312
            IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL GASTQQEFN
Sbjct: 308 RIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFN 367

[Close]

BLAST of IVF0026196 vs. NCBI nr
Match: KAA0038025.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 566 bits (1458), Expect = 1.94e-202
Identity = 293/313 (93.61%), Postives = 297/313 (94.89%), Query Frame = 0


Query: 1   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 60
           MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS
Sbjct: 8   MDLQFEQVSRRRQGSAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRVASPAASSSRS 67

Query: 61  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 120
           AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN
Sbjct: 68  AIPRNPSSYSQIVRPKIFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHGFN 127

Query: 121 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFVG 180
           FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMF+G
Sbjct: 128 FLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTPSYWKQGMFLG 187

Query: 181 RKFSHPFKPPSYNYHDYTKAW-IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF 240
                    P  N+   +K+  IKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF
Sbjct: 188 ---------PLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAF 247

Query: 241 LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEG 300
           LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEG
Sbjct: 248 LLTKNAVMSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDLDYDPYEG 307

Query: 301 LDINDPFLDTQPY 312
           LDINDPFLDTQPY
Sbjct: 308 LDINDPFLDTQPY 311

The following BLAST results are available for this feature:

BLAST of IVF0026196 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0026196 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T5B0	2.1e-169	93.01	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE...	[more]
A0A5A7UVN1	1.8e-160	74.76	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7VIK9	1.8e-160	74.76	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7V6D1	5.2e-160	74.51	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7T975	4.9e-158	93.61	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36...	[more]

BLAST of IVF0026196 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038028.1	4.01e-217	93.01	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0056777.1	4.49e-204	74.76	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran...	[more]
KAA0068172.1	4.49e-204	74.76	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0063832.1	1.83e-203	74.51	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0038025.1	1.94e-202	93.61	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0026196 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	PANTHER	PTHR46249	FAMILY NOT NAMED	coord: 78..202
None	No IPR available	PANTHER	PTHR46249:SF31	BNAC08G47480D PROTEIN	coord: 78..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0026196.1	IVF0026196.1	mRNA