IVF0005798.1 (mRNA) Melon (IVF77) v1

Overview


Name	IVF0005798.1
Type	mRNA
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Squamosa promoter-binding-like protein
Location	chr08: 1826772 .. 1829407 (-)
Sequence length	950
RNA-Seq Expression	IVF0005798.1
Synteny	IVF0005798.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCATTCACTTTCGTTTCCATTATAGTTTATATTATATATATAGTCATGTGGTTCTTCTAATTTGTTCTATACATATAAGACTTCTCTTAGGAAAATGGCAAACTCAAACGATCACAGTTGGGAGGACATGATTTTAGATGACGATGACGACGACGATAACGACACCGAAGAAGTAGGGTTTGTAGATAATGAGAGGAGGAGGAGATCTGGTTTAACCACTGGTCGTGGTGGCGGCGGAGGGGGAAGGTCAACGGTGGCACGTTGCCAAGCCGATGGCTGCAATGCTGATCTGACTGGTGCGAGACCGTACCACCGCCGCCACAAGGTCTGCGAGTTCCACGCCAAGGCAGCCGTGGTGATTCTGGCCGGATTGGAACAACGATTTTGCCAGCAGTGTAGTAGGTAAGAAAGAAAGCTTACTCTTTTTTCTTTTTTTTTTTTTCCTTTTTTTTTTGTTCAAATGATTTTCTTTTTAGAAAACCCTAATCTGGATCTGTCAAATTATTACTTTTGAGTATTACTTTTGTTAATCTTTACCAAAATGTTTCACTAACTATGGAATAAATTTATATTCAAAGGGTATTCTATTAGGGGGAAAGACATTTTTCCATTTATACAATGCAGTTGAGTCAATCCTTTTTTGAATTTTCTATTGAATATTAAACATGTATATCTTAATATTATCTCTTTTTTAAAAAAAAAAATTGTGTTTTGATAGTGATATATGTCACCACCCCAAATGGTTTTATTACCTATAGTAATTAATTTTCAATCAAGATAGTAAAATGCCCATTAATATAATAGTTATATATTGACTATCAATTTTATTTTTTAAAAAAAGTATTGACCTAATTCGTTTTTAAGGTCTTAAATTTTTAACAAACTAATAGATTAAGAATTGTTATATTAATAGTTAATTAAGTTTGTCTAAAGGTGGTAAATTGAATTTTTTTTTTCTTGAATAGAGATTGAGATCGAGGTTTTAGTGCATTACTACAAGTTTAATTAAAATTGGCTCTTCTTTTTTTCTTTTTTATAGTTAAGACTAAATGAATCAATTTTAGTTGTAATAACTTTTTAATTCAAAGTGGGTTTGAGAGTGAGTGATACAATTAATGTTATATTCTCACAGTGATTTTAAGCTTTCGATCGCTTTCTTAAAATTAGAGAACAATTGTGACATAGCGTTTTTGTGTGATTGGATTCATTTTAGTGTTAACACTTTTAATTATGTTGGACACTTAAAATAGTTTGATTTGGAATTCTAATTAATTAAGTTTACGCATCTTTTTATCCATTTGTTTTTAAAGATTAATTTAGAAGGCTGTTTTTTCTTCTTCCAAAAAAAATTCATTAACATAATTAATAAGCTACTATTTTGATTTTAGTTTTTTTGGTATGCTTTATTAAAAATTGTTTTTAAATATAATAAAATGAATCAAAATATTTAAAATTATAATAAAATATTATTTTCTATCAATAATAGTGTGGTTTAGTGATACCGTGATATCATCTATCTTCGATAATAGATATCGTTAGTAGTTTATAAAGATCTATCTATCACTAATTAACTAGACACTAATATTTTTTTTGCTTATATTTGGTGTAGTTTTACCATTTAAAAATAACCACACTTAATTAATTAAGTTTATTATATATATATATTAAGGTGATAAAATATTATTTTAGCATATCTTCATAAACTTATTTTGTTTTCGTTACTTCGTAAACTTATTTTATTTTAGTTTCATATTTTAAATAAATCTTAAATTTAGTTCGAAGTTAATTGAAGGGTGATGTAGAAGTTTTAATATAACTAATGATATTTTAAAATTGGATAAAATCAATTAAATATTTTGTAACCTATTGAGTTTTTTAGTTTTTATTTATTTATTATATTTTTAGTATCCATAGGAATATTTGTCAGTAGCTATTAACAACAATAATGGAAAAATAAATGAGAGGGAAGTAAAAATTGAAAATTAGAAAGGTGTGAAGGATTGATTAAATGCGCATTAAATGTGAAGTAAATATATTAGATGGGAAATGGAAAAGGGAAATTGTTTAGTTGTATTATGATGAACACAGGTTTCATGCAGTATCGGAATTCGATGACACAAAGAGAAGCTGCCGGAGTCGTTTGGCTGGTCACAATGAACGCCGCCGTAAAATCTTACCGGATTTTCATGGCCAATCCTCCACTAATTGAACCACACAACACTCCTCACTGTGTCCACTAATTACCATAATTAATAATAATAAATAACAATAATGATACACTCATTACTAATGAAGAAGAAGATCAAGAAAGAATGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGCTACGCGTCATTGGAGTTAATTTTGTTTTGAGAGAGAGTCACCGGCGGTCCGGCCACCGCGATGAAAAAATGAACTGTTATGCTTCCTCTCTTCTGTCATCAAAAGAAAACCCAATTTATAGCCCTCTTTGTAATATAATTTGAAGTTGTCTCTTCATTATTAGACCAAAACTTTTCATTATATTTACTTAAGTTACACTATATATATTATTATATCTCTATCCACCACTCCTTGTATATTTATATAAACACAGAAATGGTTATTAGCCTATAAAATAAC

mRNA sequence

CTTTCATTCACTTTCGTTTCCATTATAGTTTATATTATATATATAGTCATGTGGTTCTTCTAATTTGTTCTATACATATAAGACTTCTCTTAGGAAAATGGCAAACTCAAACGATCACAGTTGGGAGGACATGATTTTAGATGACGATGACGACGACGATAACGACACCGAAGAAGTAGGGTTTGTAGATAATGAGAGGAGGAGGAGATCTGGTTTAACCACTGGTCGTGGTGGCGGCGGAGGGGGAAGGTCAACGGTGGCACGTTGCCAAGCCGATGGCTGCAATGCTGATCTGACTGGTGCGAGACCGTACCACCGCCGCCACAAGGTCTGCGAGTTCCACGCCAAGGCAGCCGTGGTGATTCTGGCCGGATTGGAACAACGATTTTGCCAGCAGTGTAGTAGGTTTCATGCAGTATCGGAATTCGATGACACAAAGAGAAGCTGCCGGAGTCGTTTGGCTGGTCACAATGAACGCCGCCGTAAAATCTTACCGGATTTTCATGGCCAATCCTCCACTAATTGAACCACACAACACTCCTCACTGTGTCCACTAATTACCATAATTAATAATAATAAATAACAATAATGATACACTCATTACTAATGAAGAAGAAGATCAAGAAAGAATGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGCTACGCGTCATTGGAGTTAATTTTGTTTTGAGAGAGAGTCACCGGCGGTCCGGCCACCGCGATGAAAAAATGAACTGTTATGCTTCCTCTCTTCTGTCATCAAAAGAAAACCCAATTTATAGCCCTCTTTGTAATATAATTTGAAGTTGTCTCTTCATTATTAGACCAAAACTTTTCATTATATTTACTTAAGTTACACTATATATATTATTATATCTCTATCCACCACTCCTTGTATATTTATATAAACACAGAAATGGTTATTAGCCTATAAAATAAC

Coding sequence (CDS)

ATGGCAAACTCAAACGATCACAGTTGGGAGGACATGATTTTAGATGACGATGACGACGACGATAACGACACCGAAGAAGTAGGGTTTGTAGATAATGAGAGGAGGAGGAGATCTGGTTTAACCACTGGTCGTGGTGGCGGCGGAGGGGGAAGGTCAACGGTGGCACGTTGCCAAGCCGATGGCTGCAATGCTGATCTGACTGGTGCGAGACCGTACCACCGCCGCCACAAGGTCTGCGAGTTCCACGCCAAGGCAGCCGTGGTGATTCTGGCCGGATTGGAACAACGATTTTGCCAGCAGTGTAGTAGGTTTCATGCAGTATCGGAATTCGATGACACAAAGAGAAGCTGCCGGAGTCGTTTGGCTGGTCACAATGAACGCCGCCGTAAAATCTTACCGGATTTTCATGGCCAATCCTCCACTAATTGA

Protein sequence

MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQADGCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSRLAGHNERRRKILPDFHGQSSTN

Homology

[Close]

BLAST of IVF0005798.1 vs. ExPASy Swiss-Prot
Match: A2YFT9 (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. indica OX=39946 GN=SPL10 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-28
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 46  GGGGGRSTVARCQADGCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFH 105
           G GG      RCQA+GC ADL+GA+ YHRRHKVCE+HAKA+VV  +G +QRFCQQCSRFH
Sbjct: 170 GFGGAHHQPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFH 229

Query: 106 AVSEFDDTKRSCRSRLAGHNERRRK 131
            ++EFD+ KRSCR RLA HN RRRK
Sbjct: 230 VLTEFDEAKRSCRKRLAEHNRRRRK 254

[Close]

BLAST of IVF0005798.1 vs. ExPASy Swiss-Prot
Match: Q0DAE8 (Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL10 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-28
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 46  GGGGGRSTVARCQADGCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFH 105
           G GG      RCQA+GC ADL+GA+ YHRRHKVCE+HAKA+VV  +G +QRFCQQCSRFH
Sbjct: 170 GFGGAHHQPPRCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAASGKQQRFCQQCSRFH 229

Query: 106 AVSEFDDTKRSCRSRLAGHNERRRK 131
            ++EFD+ KRSCR RLA HN RRRK
Sbjct: 230 VLTEFDEAKRSCRKRLAEHNRRRRK 254

[Close]

BLAST of IVF0005798.1 vs. ExPASy Swiss-Prot
Match: Q2R3Y1 (Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL19 PE=3 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-28
Identity = 59/88 (67.05%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 43  GRGGGGGGRSTVARCQADGCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCS 102
           G GGGGGG      C  DGC +DL+  R YHRRHKVCE HAK  VV++AG EQRFCQQCS
Sbjct: 79  GSGGGGGGGGGAEACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFCQQCS 138

Query: 103 RFHAVSEFDDTKRSCRSRLAGHNERRRK 131
           RFH ++EFDD K+SCR RL GHN RRRK
Sbjct: 139 RFHNLAEFDDGKKSCRKRLDGHNRRRRK 166

[Close]

BLAST of IVF0005798.1 vs. ExPASy Swiss-Prot
Match: Q38741 (Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-28
Identity = 65/123 (52.85%), Postives = 86/123 (69.92%), Query Frame = 0


Query: 14  LDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQADGCNADLTGARPYH 73
           L    +   + +++G  ++ ++ R+   +G+   G   ST   CQ + C A++T A+PYH
Sbjct: 14  LPGSQEQGEEEDDIG--EDSKKTRALTPSGKRASG---STQRSCQVENCAAEMTNAKPYH 73

Query: 74  RRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSRLAGHNERRRKILP 133
           RRHKVCEFHAKA VV+ +GL+QRFCQQCSRFH +SEFD+ KRSCR RLAGHNERRRK   
Sbjct: 74  RRHKVCEFHAKAPVVLHSGLQQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSH 131

Query: 134 DFH 137
           D H
Sbjct: 134 DTH 131

[Close]

BLAST of IVF0005798.1 vs. ExPASy Swiss-Prot
Match: Q8GXL3 (Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=SPL8 PE=1 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-27
Identity = 61/88 (69.32%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 43  GRGGGGGGRSTVARCQADGCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCS 102
           G  G     ST  RCQA+GCNADL+ A+ YHRRHKVCEFH+KA+ V+ AGL QRFCQQCS
Sbjct: 175 GESGMANSLST-PRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCS 234

Query: 103 RFHAVSEFDDTKRSCRSRLAGHNERRRK 131
           RFH +SEFD+ KRSCR RLA HN RRRK
Sbjct: 235 RFHLLSEFDNGKRSCRKRLADHNRRRRK 261

[Close]

BLAST of IVF0005798.1 vs. ExPASy TrEMBL
Match: A0A1S3AZN8 (squamosa promoter-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103484510 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-74
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60
           MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD
Sbjct: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60

Query: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSR 120
           GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSR
Sbjct: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSR 120

Query: 121 LAGHNERRRKILPDFHGQSSTN 143
           LAGHNERRRKILPDFHGQSSTN
Sbjct: 121 LAGHNERRRKILPDFHGQSSTN 142

[Close]

BLAST of IVF0005798.1 vs. ExPASy TrEMBL
Match: A0A0A0KK74 (SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517960 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.4e-66
Identity = 128/142 (90.14%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60
           MANS D  WEDMI+ DDDDDDND EE+GFVDNERRRRSGLT+ RGGGGGGRSTVARCQAD
Sbjct: 1   MANSEDQGWEDMIV-DDDDDDNDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQAD 60

Query: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSR 120
           GCNADLTGA+PYHRRHKVCEFH++AAVVILAGLEQRFCQQCSRFHA+SEFDDTKRSCR R
Sbjct: 61  GCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRMR 120

Query: 121 LAGHNERRRKILPDFHGQSSTN 143
           LAGHNERRRKILPDFHGQSSTN
Sbjct: 121 LAGHNERRRKILPDFHGQSSTN 141

[Close]

BLAST of IVF0005798.1 vs. ExPASy TrEMBL
Match: A0A5A7UDV9 (Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007580 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.6e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60
           MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD
Sbjct: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60

Query: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSR 104
           GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSR
Sbjct: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSR 103

[Close]

BLAST of IVF0005798.1 vs. ExPASy TrEMBL
Match: A0A6J1KYC6 (Squamosa promoter-binding-like protein OS=Cucurbita maxima OX=3661 GN=LOC111497471 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.1e-48
Identity = 99/142 (69.72%), Postives = 122/142 (85.92%), Query Frame = 0


Query: 1   MANSNDHSWEDMI-LDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQA 60
           M NS D  W D +  ++++++++D +EVGFV++ER++R+ +++ R G GGGR++VARCQA
Sbjct: 1   MENSGDQGWGDPVEEEEEEEEEDDDDEVGFVEDERKKRA-VSSSRSGSGGGRTSVARCQA 60

Query: 61  DGCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRS 120
           D CN DL GAR YHRRHKVCEFH+KAAVVILAGLEQRFCQQCSRFH+VSEFD+TKRSCR 
Sbjct: 61  DSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRR 120

Query: 121 RLAGHNERRRKILPDFHGQSST 142
           RLAGHNERRRK LPDF GQSST
Sbjct: 121 RLAGHNERRRKNLPDFQGQSST 141

[Close]

BLAST of IVF0005798.1 vs. ExPASy TrEMBL
Match: A0A6J1EFR3 (Squamosa promoter-binding-like protein OS=Cucurbita moschata OX=3662 GN=LOC111433770 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.3e-45
Identity = 96/144 (66.67%), Postives = 118/144 (81.94%), Query Frame = 0


Query: 1   MANSNDHSWEDMI---LDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARC 60
           M +S D  W + +    ++++++D+D +E+GFV +ER++R+  +  R G GGGR++V RC
Sbjct: 1   MEHSGDQGWGEPVEEEEEEEEEEDDDDDEIGFVKDERKKRAA-SGSRSGSGGGRTSVPRC 60

Query: 61  QADGCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSC 120
           QAD CN DL GAR YHRRHKVCEFH+KAAVVILAGLEQRFCQQCSRFH+VSEFD+TKRSC
Sbjct: 61  QADSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSC 120

Query: 121 RSRLAGHNERRRKILPDFHGQSST 142
           R RLAGHNERRRK LPDF GQSST
Sbjct: 121 RRRLAGHNERRRKNLPDFQGQSST 143

[Close]

BLAST of IVF0005798.1 vs. NCBI nr
Match: XP_008439842.1 (PREDICTED: squamosa promoter-binding protein 1 [Cucumis melo])

HSP 1 Score: 287 bits (734), Expect = 1.08e-97
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60
           MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD
Sbjct: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60

Query: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSR 120
           GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSR
Sbjct: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSR 120

Query: 121 LAGHNERRRKILPDFHGQSSTN 142
           LAGHNERRRKILPDFHGQSSTN
Sbjct: 121 LAGHNERRRKILPDFHGQSSTN 142

[Close]

BLAST of IVF0005798.1 vs. NCBI nr
Match: XP_004134953.1 (squamosa promoter-binding protein 1 [Cucumis sativus] >KGN49239.1 hypothetical protein Csa_003123 [Cucumis sativus])

HSP 1 Score: 260 bits (664), Expect = 4.97e-87
Identity = 128/142 (90.14%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60
           MANS D  WEDMI+DDDDDD ND EE+GFVDNERRRRSGLT+ RGGGGGGRSTVARCQAD
Sbjct: 1   MANSEDQGWEDMIVDDDDDD-NDNEEIGFVDNERRRRSGLTSARGGGGGGRSTVARCQAD 60

Query: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSR 120
           GCNADLTGA+PYHRRHKVCEFH++AAVVILAGLEQRFCQQCSRFHA+SEFDDTKRSCR R
Sbjct: 61  GCNADLTGAKPYHRRHKVCEFHSRAAVVILAGLEQRFCQQCSRFHALSEFDDTKRSCRMR 120

Query: 121 LAGHNERRRKILPDFHGQSSTN 142
           LAGHNERRRKILPDFHGQSSTN
Sbjct: 121 LAGHNERRRKILPDFHGQSSTN 141

[Close]

BLAST of IVF0005798.1 vs. NCBI nr
Match: XP_038880830.1 (squamosa promoter-binding protein 1-like [Benincasa hispida])

HSP 1 Score: 242 bits (618), Expect = 5.13e-80
Identity = 121/142 (85.21%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60
           M NS D  WEDM++++DDD+D D EE+GFV++ERRRRS LT GRGG GGGR TVARCQAD
Sbjct: 1   MTNSEDQVWEDMVVEEDDDND-DNEEIGFVEDERRRRSALTGGRGGSGGGRVTVARCQAD 60

Query: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSR 120
           GCNADL+ ARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCR R
Sbjct: 61  GCNADLSCARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRRR 120

Query: 121 LAGHNERRRKILPDFHGQSSTN 142
           LAGHNERRRKILPDFHGQSSTN
Sbjct: 121 LAGHNERRRKILPDFHGQSSTN 141

[Close]

BLAST of IVF0005798.1 vs. NCBI nr
Match: KAA0052677.1 (squamosa promoter-binding protein 1 [Cucumis melo var. makuwa] >TYK13147.1 squamosa promoter-binding protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 208 bits (530), Expect = 3.85e-67
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60
           MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD
Sbjct: 1   MANSNDHSWEDMILDDDDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQAD 60

Query: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSR 103
           GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSR
Sbjct: 61  GCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSR 103

[Close]

BLAST of IVF0005798.1 vs. NCBI nr
Match: XP_023004048.1 (squamosa promoter-binding-like protein 3 [Cucurbita maxima])

HSP 1 Score: 199 bits (506), Expect = 5.99e-63
Identity = 99/142 (69.72%), Postives = 122/142 (85.92%), Query Frame = 0


Query: 1   MANSNDHSWEDMILDDDDDDD-NDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQA 60
           M NS D  W D + +++++++ +D +EVGFV++ER++R+ +++ R G GGGR++VARCQA
Sbjct: 1   MENSGDQGWGDPVEEEEEEEEEDDDDEVGFVEDERKKRA-VSSSRSGSGGGRTSVARCQA 60

Query: 61  DGCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRS 120
           D CN DL GAR YHRRHKVCEFH+KAAVVILAGLEQRFCQQCSRFH+VSEFD+TKRSCR 
Sbjct: 61  DSCNVDLNGARAYHRRHKVCEFHSKAAVVILAGLEQRFCQQCSRFHSVSEFDETKRSCRR 120

Query: 121 RLAGHNERRRKILPDFHGQSST 141
           RLAGHNERRRK LPDF GQSST
Sbjct: 121 RLAGHNERRRKNLPDFQGQSST 141

[Close]

BLAST of IVF0005798.1 vs. TAIR 10
Match: AT1G02065.1 (squamosa promoter binding protein-like 8 )

HSP 1 Score: 124.4 bits (311), Expect = 7.3e-29
Identity = 61/88 (69.32%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 43  GRGGGGGGRSTVARCQADGCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCS 102
           G  G     ST  RCQA+GCNADL+ A+ YHRRHKVCEFH+KA+ V+ AGL QRFCQQCS
Sbjct: 175 GESGMANSLST-PRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCS 234

Query: 103 RFHAVSEFDDTKRSCRSRLAGHNERRRK 131
           RFH +SEFD+ KRSCR RLA HN RRRK
Sbjct: 235 RFHLLSEFDNGKRSCRKRLADHNRRRRK 261

[Close]

BLAST of IVF0005798.1 vs. TAIR 10
Match: AT3G60030.1 (squamosa promoter-binding protein-like 12 )

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-28
Identity = 56/95 (58.95%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 47  GGGGRSTVARCQADGCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSRFHA 106
           GGG  S    CQ D C ADL+  + YHRRHKVCE H+KA   ++ G+ QRFCQQCSRFH 
Sbjct: 117 GGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHV 176

Query: 107 VSEFDDTKRSCRSRLAGHNERRRKILPDFHGQSST 142
           + EFD+ KRSCR RLAGHN+RRRK  PD  G  ++
Sbjct: 177 LEEFDEGKRSCRRRLAGHNKRRRKANPDTIGNGTS 211

[Close]

BLAST of IVF0005798.1 vs. TAIR 10
Match: AT1G53160.2 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 122.5 bits (306), Expect = 2.8e-28
Identity = 65/114 (57.02%), Postives = 79/114 (69.30%), Query Frame = 0


Query: 17  DDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQADGCNADLTGARPYHRRH 76
           ++D + DT+E   V  +R R S  +  RGG      ++  CQ D C AD+  A+ YHRRH
Sbjct: 20  EEDMETDTDEEEEVGRDRVRGSRGSINRGG------SLRLCQVDRCTADMKEAKLYHRRH 79

Query: 77  KVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSRLAGHNERRRK 131
           KVCE HAKA+ V L+GL QRFCQQCSRFH + EFD+ KRSCR RLAGHNERRRK
Sbjct: 80  KVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRK 127

[Close]

BLAST of IVF0005798.1 vs. TAIR 10
Match: AT1G53160.1 (squamosa promoter binding protein-like 4 )

HSP 1 Score: 122.5 bits (306), Expect = 2.8e-28
Identity = 65/114 (57.02%), Postives = 79/114 (69.30%), Query Frame = 0


Query: 17  DDDDDNDTEEVGFVDNERRRRSGLTTGRGGGGGGRSTVARCQADGCNADLTGARPYHRRH 76
           ++D + DT+E   V  +R R S  +  RGG      ++  CQ D C AD+  A+ YHRRH
Sbjct: 20  EEDMETDTDEEEEVGRDRVRGSRGSINRGG------SLRLCQVDRCTADMKEAKLYHRRH 79

Query: 77  KVCEFHAKAAVVILAGLEQRFCQQCSRFHAVSEFDDTKRSCRSRLAGHNERRRK 131
           KVCE HAKA+ V L+GL QRFCQQCSRFH + EFD+ KRSCR RLAGHNERRRK
Sbjct: 80  KVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRK 127

[Close]

BLAST of IVF0005798.1 vs. TAIR 10
Match: AT2G42200.1 (squamosa promoter binding protein-like 9 )

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-27
Identity = 56/90 (62.22%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 44  RGGGGGGRSTVARCQADGCNADLTGARPYHRRHKVCEFHAKAAVVILAGLEQRFCQQCSR 103
           RGGG G    + RCQ +GC  DLT A+ Y+ RH+VC  H+K   V +AG+EQRFCQQCSR
Sbjct: 61  RGGGSGQSGQIPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSR 120

Query: 104 FHAVSEFDDTKRSCRSRLAGHNERRRKILP 134
           FH + EFD  KRSCR RLAGHNERRRK  P
Sbjct: 121 FHQLPEFDLEKRSCRRRLAGHNERRRKPQP 150

The following BLAST results are available for this feature:

BLAST of IVF0005798.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2YFT9	1.6e-28	68.24	Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. indica OX=39946...	[more]
Q0DAE8	1.6e-28	68.24	Squamosa promoter-binding-like protein 10 OS=Oryza sativa subsp. japonica OX=399...	[more]
Q2R3Y1	1.6e-28	67.05	Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japoni...	[more]
Q38741	2.7e-28	52.85	Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV...	[more]
Q8GXL3	1.0e-27	69.32	Squamosa promoter-binding-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=SPL8...	[more]

BLAST of IVF0005798.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AZN8	2.6e-74	100.00	squamosa promoter-binding protein 1 OS=Cucumis melo OX=3656 GN=LOC103484510 PE=4...	[more]
A0A0A0KK74	3.4e-66	90.14	SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G517960 PE...	[more]
A0A5A7UDV9	2.6e-50	100.00	Squamosa promoter-binding protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1KYC6	7.1e-48	69.72	Squamosa promoter-binding-like protein OS=Cucurbita maxima OX=3661 GN=LOC1114974...	[more]
A0A6J1EFR3	3.3e-45	66.67	Squamosa promoter-binding-like protein OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of IVF0005798.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439842.1	1.08e-97	100.00	PREDICTED: squamosa promoter-binding protein 1 [Cucumis melo]	[more]
XP_004134953.1	4.97e-87	90.14	squamosa promoter-binding protein 1 [Cucumis sativus] >KGN49239.1 hypothetical p...	[more]
XP_038880830.1	5.13e-80	85.21	squamosa promoter-binding protein 1-like [Benincasa hispida]	[more]
KAA0052677.1	3.85e-67	100.00	squamosa promoter-binding protein 1 [Cucumis melo var. makuwa] >TYK13147.1 squam...	[more]
XP_023004048.1	5.99e-63	69.72	squamosa promoter-binding-like protein 3 [Cucurbita maxima]	[more]

BLAST of IVF0005798.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02065.1	7.3e-29	69.32	squamosa promoter binding protein-like 8	[more]
AT3G60030.1	2.1e-28	58.95	squamosa promoter-binding protein-like 12	[more]
AT1G53160.2	2.8e-28	57.02	squamosa promoter binding protein-like 4	[more]
AT1G53160.1	2.8e-28	57.02	squamosa promoter binding protein-like 4	[more]
AT2G42200.1	1.8e-27	62.22	squamosa promoter binding protein-like 9	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 47..118 e-value: 4.8E-34 score: 118.3
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 55..135
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 57..130 e-value: 6.1E-33 score: 113.0
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 54..131 score: 31.684092
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 40..132

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
IVF0005798	IVF0005798	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005798.1-exon	IVF0005798.1-exon-chr08:1826772..1827316	exon
IVF0005798.1-exon	IVF0005798.1-exon-chr08:1829003..1829407	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005798.1-three_prime_utr	IVF0005798.1-three_prime_utr-chr08:1826772..1827195	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005798.1-cds	IVF0005798.1-cds-chr08:1827196..1827316	CDS
IVF0005798.1-cds	IVF0005798.1-cds-chr08:1829003..1829310	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
IVF0005798.1-five_prime_utr	IVF0005798.1-five_prime_utr-chr08:1829311..1829407	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
IVF0005798.1	IVF0005798.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009908	flower development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046872	metal ion binding