Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCCTTCTTCATCCCCTAACAAGAATTCCATATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGAGGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAGTAAGTTGTTTATTTAGCTTTCCCGTATCGTGGATGGTGTGATTGGATTCAGGAGTTCTATAATGTCATGTTCGGTAGAGGGAGGAGAAAATTAA
mRNA sequence
ATGCTCCCTTCTTCATCCCCTAACAAGAATTCCATATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGAGGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAAGGGAGGAGAAAATTAA
Coding sequence (CDS)
ATGCTCCCTTCTTCATCCCCTAACAAGAATTCCATATCCTTGGACCACCCTGTTGCCGATGCTGTTACTGCCTATCATTTTTTATTCCGCTTCGTTGCTTCGGCTTCTTCTGCTCTCGATAGGGTTTCCGAGGATGCTATCAATCCGGTTGATCGGTTCCTTCGTGAGGAGGCTTTGCACAACCCTGGCAAGCGTCTATCAAAGGGAGGAGAAAATTAA
Protein sequence
MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALHNPGKRLSKGGEN
Homology
BLAST of IVF0021218 vs. ExPASy TrEMBL
Match:
A0A1S3B3D2 (uncharacterized protein LOC103485359 OS=Cucumis melo OX=3656 GN=LOC103485359 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 4.9e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
Query: 1 MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60
MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH
Sbjct: 1 MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60
Query: 61 NPGKRLSK 69
NPGKRLSK
Sbjct: 61 NPGKRLSK 68
BLAST of IVF0021218 vs. ExPASy TrEMBL
Match:
A0A5D3CQ27 (R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001070 PE=4 SV=1)
HSP 1 Score: 134.4 bits (337), Expect = 1.9e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query: 1 MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60
MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH
Sbjct: 73 MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 132
Query: 61 NPGKRLS 68
NPGKRLS
Sbjct: 133 NPGKRLS 139
BLAST of IVF0021218 vs. ExPASy TrEMBL
Match:
A0A1S3BGI0 (R3H domain-containing protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489394 PE=4 SV=1)
HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = 0
Query: 1 MLPSSSPNKNSISLDHPVADAVTAYHF----LFRFVASASSALDRVSEDAINPVDRFLRE 60
MLPSSSP KNS SLD VADA AYHF ASASSALDRVSEDAIN VD+FLR
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAPAYHFSSASFPSLSASASSALDRVSEDAINQVDQFLR- 87
Query: 61 EALHNPGKRLS 68
EALHNP +RLS
Sbjct: 88 EALHNPRERLS 95
BLAST of IVF0021218 vs. ExPASy TrEMBL
Match:
A0A5D3CFX4 (R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002020 PE=4 SV=1)
HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = 0
Query: 1 MLPSSSPNKNSISLDHPVADAVTAYHF----LFRFVASASSALDRVSEDAINPVDRFLRE 60
MLPSSSP KNS SLD VADA AYHF ASASSALDRVSEDAIN VD+FLR
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAPAYHFSSASFPSLSASASSALDRVSEDAINQVDQFLR- 87
Query: 61 EALHNPGKRLS 68
EALHNP +RLS
Sbjct: 88 EALHNPRERLS 95
BLAST of IVF0021218 vs. ExPASy TrEMBL
Match:
A0A6J1HWM6 (R3H domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111467527 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 3.3e-09
Identity = 44/71 (61.97%), Postives = 46/71 (64.79%), Query Frame = 0
Query: 1 MLPSSSPNKNSISLDHPVADAVTAYHFLFRFV----ASASSALDRVSEDAINPVDRFLRE 60
MLPSSSP KNS SLDH VADA H AS SS DR SED IN VD+FLR
Sbjct: 28 MLPSSSPLKNSKSLDHSVADAALGSHSSSASFPSPSASTSSTPDRASEDVINQVDQFLR- 87
Query: 61 EALHNPGKRLS 68
EALHNP +RLS
Sbjct: 88 EALHNPRERLS 97
BLAST of IVF0021218 vs. NCBI nr
Match:
XP_008441130.1 (PREDICTED: uncharacterized protein LOC103485359 [Cucumis melo])
HSP 1 Score: 137 bits (346), Expect = 7.55e-40
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
Query: 1 MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60
MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH
Sbjct: 1 MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60
Query: 61 NPGKRLSK 68
NPGKRLSK
Sbjct: 61 NPGKRLSK 68
BLAST of IVF0021218 vs. NCBI nr
Match:
KAA0025653.1 (R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK12526.1 R3H domain-containing protein 2-like [Cucumis melo var. makuwa])
HSP 1 Score: 135 bits (341), Expect = 5.38e-39
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
Query: 1 MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 60
MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH
Sbjct: 73 MLPSSSPNKNSISLDHPVADAVTAYHFLFRFVASASSALDRVSEDAINPVDRFLREEALH 132
Query: 61 NPGKRLS 67
NPGKRLS
Sbjct: 133 NPGKRLS 139
BLAST of IVF0021218 vs. NCBI nr
Match:
XP_038892280.1 (uncharacterized protein LOC120081466 [Benincasa hispida])
HSP 1 Score: 86.7 bits (213), Expect = 9.08e-18
Identity = 50/71 (70.42%), Postives = 52/71 (73.24%), Query Frame = 0
Query: 1 MLPSSSPNKNSISLDHPVADAVTAYHFLFR----FVASASSALDRVSEDAINPVDRFLRE 60
MLPSSSP KNS SLDH VADA AYHF AS SS LDRVSEDAIN VD+FLRE
Sbjct: 28 MLPSSSPKKNSKSLDHSVADAAPAYHFSSASFPSLSASPSSTLDRVSEDAINQVDQFLRE 87
Query: 61 EALHNPGKRLS 67
ALHNP +RLS
Sbjct: 88 -ALHNPRERLS 97
BLAST of IVF0021218 vs. NCBI nr
Match:
XP_008446764.1 (PREDICTED: R3H domain-containing protein 2-like [Cucumis melo] >XP_008446765.1 PREDICTED: R3H domain-containing protein 2-like [Cucumis melo])
HSP 1 Score: 82.4 bits (202), Expect = 2.91e-16
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = 0
Query: 1 MLPSSSPNKNSISLDHPVADAVTAYHFLFR----FVASASSALDRVSEDAINPVDRFLRE 60
MLPSSSP KNS SLD VADA AYHF ASASSALDRVSEDAIN VD+FLRE
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAPAYHFSSASFPSLSASASSALDRVSEDAINQVDQFLRE 87
Query: 61 EALHNPGKRLS 67
ALHNP +RLS
Sbjct: 88 -ALHNPRERLS 95
BLAST of IVF0021218 vs. NCBI nr
Match:
KAA0034658.1 (R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H domain-containing protein 2-like [Cucumis melo var. makuwa])
HSP 1 Score: 82.4 bits (202), Expect = 3.16e-16
Identity = 51/71 (71.83%), Postives = 53/71 (74.65%), Query Frame = 0
Query: 1 MLPSSSPNKNSISLDHPVADAVTAYHFLFR----FVASASSALDRVSEDAINPVDRFLRE 60
MLPSSSP KNS SLD VADA AYHF ASASSALDRVSEDAIN VD+FLRE
Sbjct: 28 MLPSSSPKKNSKSLD--VADAAPAYHFSSASFPSLSASASSALDRVSEDAINQVDQFLRE 87
Query: 61 EALHNPGKRLS 67
ALHNP +RLS
Sbjct: 88 -ALHNPRERLS 95
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3B3D2 | 4.9e-29 | 100.00 | uncharacterized protein LOC103485359 OS=Cucumis melo OX=3656 GN=LOC103485359 PE=... | [more] |
A0A5D3CQ27 | 1.9e-28 | 100.00 | R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A1S3BGI0 | 1.9e-12 | 71.83 | R3H domain-containing protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489394 PE=... | [more] |
A0A5D3CFX4 | 1.9e-12 | 71.83 | R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A6J1HWM6 | 3.3e-09 | 61.97 | R3H domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111467527... | [more] |
Match Name | E-value | Identity | Description | |
XP_008441130.1 | 7.55e-40 | 100.00 | PREDICTED: uncharacterized protein LOC103485359 [Cucumis melo] | [more] |
KAA0025653.1 | 5.38e-39 | 100.00 | R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK12526.1 R3H ... | [more] |
XP_038892280.1 | 9.08e-18 | 70.42 | uncharacterized protein LOC120081466 [Benincasa hispida] | [more] |
XP_008446764.1 | 2.91e-16 | 71.83 | PREDICTED: R3H domain-containing protein 2-like [Cucumis melo] >XP_008446765.1 P... | [more] |
KAA0034658.1 | 3.16e-16 | 71.83 | R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H ... | [more] |
Match Name | E-value | Identity | Description | |