IVF0008755 (gene) Melon (IVF77) v1

Overview


Name	IVF0008755
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ribosome-recycling factor, chloroplastic
Location	chr05: 2826167 .. 2833110 (-)
RNA-Seq Expression	IVF0008755
Synteny	IVF0008755

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCCCCTTCTCCGCCACCACCTCTATCCGCCGTTCCCTCTTCCATAATCCCCCTCCCAAACCCCCCTCTCACTCCGAGGTACGTCATTCTTCAACCCACAATTTTGTTTCCTCTTTCTACCTTTTCTGTTTGGTTTCTTCATCATCCCCCAATGCCTCGCCTTCCAGATTATAATGGAGGGTTAAATTGCGTCAAATGCGGCTCCAGTTCTGCGCATCTTTGTTCATGGAAGTCAGCTTCCAACTACGTCAGGCTCAACCAACGAGCCCTATTGCTCTCTACCCAACTCTCTGTTTCTGGGAATGTGTTGAAAAACAGGCATGTATTTGACTTTTATTTCGTTTACTTTCTTACGAGCCTTGTGGCGTTGTGTGTACCTTGTGAATTGGTGTAAATTTGAACATCCTCTGTAGTGAAGTGGTTACGTGGGGCAGCACTCTATGAACATACAAGCATTTTGCTTTTGCATTTGTCTTATTGCCATGCGAAGTTAATTTTGGTAGTTTTTTCAGTTGTGTTGATTTTATATTGGCTCTGAATTTTTGTTTTTAGAAGGGGAGTTGTGAGGGCTGCAACAATCGAAGAAATTGAAGCAGAGAAAACATTGATCGAGAAAGATGTAGTAAGTTCATATTTTCATTGATGTGGAGACTTGCTGTGTATTATACTCAAGCAAGCTTACGCTAAGAAATAATCGTGCGAATGACCATCCAATTATTCTCCAGAAAGCAAGGATGGAAAAGACTATTGATACTGTTCGGTCTAATTTCAATTCAATTAGGACCGGGAGATCAAATCCTGCCATGCTTGATAAGATTGAGGTACATGCCAATTTTTAAATTTGGCTGGTTAACGAATAGTTGCTTCATTACGAGACTAGTAACATGCTAATGATATGTGTTATGTACAAACCGTCTGTCGCTTTCATGAATTTTCAGGTGGAGTATTACGGCAGTCCAGTTAGCCTGAAGAGCATTGCTCAAATTAGTACACCTGATGCAAGCTCACTCTTGGTCCAGCCATATGATAAATCCAGGTATTCAATGTGCCAGTTGGCTGAGTTGAATGTATTTAGGAACCGTTTTGAATATATTGGTTGGTGCACCCTCAGGCACTATATGACTTCACTTTTTCCAAATTCCTATAGTTTTAGAATTGGTATAAAACAATACATGGTGGATGTTATGATGACCCTTTACCACGAAGCCTTGAAATTGAAGATCTGCAGGATCTTCCTTGATCCTTTGTCCATTTCAAAATTGTAGATATTACTGTTACTAGCTTGCTTTTCTTTTAGAGACCTACTCAAGGGCTTCAAAATTTTGTCATCGTAATTTTTGTTTTTATGAATAAGAAGGTTTCACATATGCAGACATTTTTTTGGAGCTTTTCAATCTTCCTTAATCTTGACTTACTGGTTGAGATTGCTGTGGACATAAACAGCCTCTTATTATTAGATATAGAATGATGCCATCCAGCTGAACAGTGTAATGCATTTCTATAACGTCTCTTGGCAATCAGCATTAACTCTTAACGAGTCATCATCTTCAGCTTAAAGTCAATAGAGAAGGCCATAGTCAACTCTGACTTGGGATTGACTCCAAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACATCCGAAAGAAGAAAGGTATTTTCCTTTGTATTTGCAAGAATTTTCCAACTAGATGTACCATTAAGCCTTTTCTATTTTAGCATTGTTTAATGCCAATTATGTAAGAACCAGTAGAGAACTTTTTTCTGTCTCCATTATCTTTTGCACGTTCATCTTAAGATGCTGTTCTATAGTTCCTTGTCTAGTCTGATCATGTTCTAGTGAAAGAAACAGTCTGCAACTATGCCTTGCAGAATATTGCTGTAATACTCTTGTGGTTCTATACCTATTCATGAAATTGAAGAGACTCACTTCCATTATTTAAATTGCCTGCCTTGTTGAGATTAGAGCAGGCGGTCAGTGGTGCATGTTATATTTTTCACTTTACCAAAGAAGCATAGACACTCAAGTTTTTTAATGTGTCCATGTTGGACACATATTGGGCACTTCTTAGCATAATAGTTGATAACTCGTTAAGCATACTAAATAGCCACATAATAATATGAGTATAGGACAAAAATAATTCATGTGGAAGAATGTATGAGTTTTATTAATTCATGCAATACACTGATACAAGTTCTCTAAATAAATAGAATAAGTAGGCAAAATAAAAACAACCTTCAACTTAACTGACTAACCAATCCTCAACTAATTACATATAATACTTCTCCTCAAGTTGGGGTGGGAATATCCTACGTACCCAACTTGCTTAAAATGGAGAAAATAAGGATGTCTTATTGGTGTTCTCATGAAAGATTGGGTTGAAGCTATGGAGATAGTGGCTTGATTGTCTCAATATATGAGAGCTGGAAAAATATGATCAAGATGTAAGTCTCCAAGAACCTGATTAATCCAAACTGCAAGGTCATGATATTGTGTCACGCGCTGCCCCGCACGCATCCTAACTTGCCATGCGGTATGCGGCGAGATTTAGAGCAATCTTGGCGCCTCCAAAGCGAAACGCCAGAACGCTCACTTAGGTCCTTAAGCCTTGCTTAATTGCCTGATGACTTCGTAAACTTAAATCTATACTTTAGGGGATAAATAACAACTTGACACAACGGAAAAAGATAAACCATTTCTTTTATTAACTTTTAACTGAGCATTCTACAACAATTCACATGATACAAGAAAATAACACTGAAACTTAAACTAAACGTTTGTTATCCCCTTCTCGCTTAGCAGCTTCTCATCCATTCCTTACTTTGGCCTTAACACCTGATCACCTAGGGAGTGAAAACTTAAAAAGTAAGTCAAAAGACTTAGTGAGAAAATTTTAAGAAAACCCTTTTTGGAATACCTTTCATAAACAACATTTTATATCATATCGTGTAAACACATCATATTGCATAAAGACACATTAGTCTCAAACAATCCTTTTACCAATAACATGAATCATTCCTTACGCCAAAACTCATCATCTTGCGTTTAGACTACTGTGATGTCCTTTTCATCAACAACATCCAGAAATATCCTAATTCACTCCTTGTTGCTTAGGCCGCTAAGCACAATACATATCTTTTATGCATTGGCCTACTTCTTTCCACTATATAGTCCTTTTCTACATGGCTGCCTTTACTTTTATGTGCACATAACAGTTAACTTATTAATCGGGAGAAGACTAATAGTTTAGTCACAATTTCGTTAAATATTCATATAAAACATACTTCGAACATAATATAAATTTCCTCTGGAAATCTCTTTTAAACATTCTTATATAAAATATCATTTCAAATCAGTAATAACTTTAAAGAAAACCTTTTAACATAAACAAATTCCTTTAGGAAGAAATCACTCACAATAACTTGTCTTTTCTTCTCGTAGAACGCAAAATAACTTGTCTTTCCTTCTCGTAGAACGCCTAATGTCAACTCCACACTTAACTTCCTTTTCTAATTTCCACCGGCAAAACTTCTTATTAATTTGACTTCATCCTCTATTTATACTAATCGTGAATTGGATTAGTCATCCTTAATCCCTTAATAGCTTGCTAGCTCCTGCTCTTAGTGGTACACGTGTAAGCTTCATGTTTACCTTAAACATGCTTAACTCTTAACCTTCCACGTAAACCTCTGTCAAATCAAGATTAGACTTTTTCCTCACCTTGCTCCATTTAGCGAAGAACTCCAAACACTTGACCATACTTAAACTTAAATGCCAAGTGTCATATCGCGTTGCTTTACTTCATCACAAACTGACTCAAACGCCAGCTTCTTGTCAGAAGCTACTTCTCAAAACGGCTACTCAACACCTAGTGAAAATTTTGATTCTTCTTATCTAGGTACGGGTCTCACAACTGAACCCAGCTGATGAATGTGAGATTGTCCCTTGCTTCTTTGACTTCCAAGATTTCGAGGATTCTCCAAGGAAAACACCGAAGTCTATGACTGGTTTTCTGGTATCTACACATGCACCCCAGTTAGCATCTACAGAGGATTTAGGCTGGAAGTTAGAAGTTGGCTTCAATAAAACCACTTGGCCAGGTGCCTTCTTCAGGTGACGAAGAAGCTGGTGAGCAACTTCATATGTTGAGTAGTAGGTTTTTGAAGAACTTGACTTAGGCAGTGGACTGAAAAAGAAATATATGGTTGATAGATTTGAAGGTATAAGAATCGTCCAATCAATCTTTGGTAACAAGATGCTTCATCAAGAGATAAATTTGTGCCACGGTCCTAAGAAAGATGAAGATTGGGGGAATCCATGAGCAGGCTTTGCTTCAAGGAAGTTAGTATCTTCAAGTATTTGCAAACAATACTTCCTTTATGAGAGAAATAATCCTTGTTTGGATCGGGAAATCTTCAGCCCAAGAAAGTATTTCCCATGTCACAAAGCTTTAAGCATGAAATTGGATTTTAACATTTGCTTCATCGAGTCAATTTCAGAAACACAAGACCATGTGGTAGAATGTCATCGACATTTACTAATAATGCAACAAAACGACTTCTAGATTCTTGAGTGAAAAATGAACAATTTGATATAGATTGAGTAAATTTGTGTTTGAATAAGGCAGCTAAGAACTTCATGAACCATTGAGCATGGAATAGTTCGATCTCATAGTTTAAGCATGTTACCCACAAAGTTATTGCTTTCGAATTTCAATCTTGTATAAAAAAAATTGGGCAAACATCAATTTATACCCTTAAACTTTTGGGATTGTATCGATTAAAACCTCAATCTAATAATTTTATTAGTTTAATCCCTGAACTTTCTTTAGTGAATGAATTTAAATCCTATAGATATTAGCGGGTTTTTATTAAATTTGAGTGGTTTTTAACCAGCGTGTCTTCCTCTATTTTTCTTTACTTATTTAGAAATAGTTGTTTGATATTCTTCTTGCTTCTTTGGTGGGATTTTGGAAGAATAATTACTTTTGTTTAGGTGATTTTGAGTTGATTTTAAACAGATTGAAGTGAAAATAACAACAGATCACAAACAAATGTTCTATATATTGATTCGTTTATAAAATTTAGAATTTAAATTGATACAATTATCATTTTGAAGTTTCTACTGATCTTTCTATTAATACACGTTCAAAATTTTCAAGGTAATTCAATATTTGCCACAATATTTTAACAAATGTGTCTTTGCATTGTAAAAATGATGTCACCTTGTCTGTATCTATGATTCCTAGATGACTCAATAAAAATATCATTTCTACGATATATCACAAATTCCAAATGTTTAAGGCTTTAAGCTCAATGTGTCAAAATTCAAAATGTGTGGGACACTAATGGAAAGTTACATATTATTAGCATTTCCTTTGGGGAAATGTAAATTTTTACATTCCAACTTTTAATACCTATTGTTTATTAATTTTGATAATTTGGGGGCAAATTAGGAAGACAATTTTAAAATCTGTAAATTTTATATAAAATTTTTCAATCCATATGATCCCTCTTTTCTTTTTCTTTCTTTTATTTTTATTTTGTTTTTGCTTCACCTTTGTGTTTGGTGATATATTTGGCTACTTCACCTTGCAGGAGCTGTCAAAAGTTGTTGCAAAGCAGGCAGAGGAAGGGAAGGTATGTATCATATAGTTAGTACAAAGGGGTTGAGGTTGGGAATGGATTGAGATATATGTTCTGATGTAGATTTCTACTTCAAGACTTTTGGGATCTATGCTTGAACAGCCACTGATGGTTCTGCATCTGCCTGTTTACAGGTTGCAGTAAGGAATATAAGAAGAGATGCTTTAAAAGCGTATGAAAAATTGGAAAAGGTCCGAACTCATACATCTTCATATCTTAATCTTATGGTTCTGCTTCTAAGTCCTATTGATCTGCCTTCCAAGAGCAAGCTCCTTTCTCTATTGTATAGTTTTTGCGCTTACTCTGGTTTCCTTAAATATTTTGTTCCTGTTTCAGGAGAAAAAACTTTCGGAAGATAATGTTAAGGACTTGTCAAGTGATTTGCAGGTTTGTTGTTGCTTTTAAACTCAGTCATTTAGAGCTTTTGGCCCTGCTTCAGTTATTTTCTATTAAAATTCAAGTAAGTTCACACAAGATGATAGAAAGGAATGGAGGATGTAATTCCCTGGTGAAGGCATCAGACCTTGGAAAGGTTGTACTAAATTCAAAAGCACAAGTTGTGAAAACATTTTGTAATCGTTGCATACAATGGGTTTTAAGTTATCCAGCATATTACCATGCTTATGTTCCCCAAGACTGTAAAATTTTTTCTTGTAGTTGTTAAAACGTTGAATTTATATATTAGAAGTTTTATTTCTCACTTCCCCCTTATTGTGAGCATCCCAAGTTAAGATGATTTCTTTGTGCAGAAACTGACGGATGACTATATGAAGAAGATTGATGTCTTATACAAGCAAAAAGAGAAGGTACGGTCCATCTCGATTGAACTGTTTTGAGTTTCAGAACTATTACTCAAACTATTATTAAAGGACTCAAAGACTCTGTTCCACTAATATGACATGTTTCGGTGATTCTAAAATAGTTAAAGATAAGTTTTGTCATTTTAAAATCACTTAAGAGTACGTTTAATAAATTTAAAATCAATTTTAATAGAATAATAAACACTTTTAGTAGTGTAGAATTAAACATCTGAGTCGATTTGAGTAATTAAAAGTATGTTTCATAATAATTTTAAATATGACAAAACTGATCATGACAATTTCAAAATCACTTTCAAACATGCATTTAATCGTAAATCCAAACACACAAATATTGGTTCACCCACTAAATCTATTTGATTAGTCACAATAGTTTTTGACACGTTTCTCGTATGTTAGTACCACTATGACAACCCAACCAACATATGTGTTTGTATTGTGTTTCAGGAATTGTTGAAGGTATGA

mRNA sequence

ATGGCCACCCCCTTCTCCGCCACCACCTCTATCCGCCGTTCCCTCTTCCATAATCCCCCTCCCAAACCCCCCTCTCACTCCGAGGTACATTATAATGGAGGGTTAAATTGCGTCAAATGCGGCTCCAGTTCTGCGCATCTTTGTTCATGGAAGTCAGCTTCCAACTACGTCAGGCTCAACCAACGAGCCCTATTGCTCTCTACCCAACTCTCTGTTTCTGGGAATGTGTTGAAAAACAGAAGGGGAGTTGTGAGGGCTGCAACAATCGAAGAAATTGAAGCAGAGAAAACATTGATCGAGAAAGATGTAAAAGCAAGGATGGAAAAGACTATTGATACTGTTCGGTCTAATTTCAATTCAATTAGGACCGGGAGATCAAATCCTGCCATGCTTGATAAGATTGAGGTGGAGTATTACGGCAGTCCAGTTAGCCTGAAGAGCATTGCTCAAATTAGTACACCTGATGCAAGCTCACTCTTGGTCCAGCCATATGATAAATCCAGCTTAAAGTCAATAGAGAAGGCCATAGTCAACTCTGACTTGGGATTGACTCCAAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACATCCGAAAGAAGAAAGCAGGCGGTCAGTGGTGCATACTACTGTGATGTCCTTTTCATCAACAACATCCAGAAATATCCTAATTCACTCCTTGAGAAAAAACTTTCGGAAGATAATGTTAAGGACTTGTCAAGTGATTTGCAGAAACTGACGGATGACTATATGAAGAAGATTGATGTCTTATACAAGCAAAAAGAGAAGGAATTGTTGAAGGTATGA

Coding sequence (CDS)

ATGGCCACCCCCTTCTCCGCCACCACCTCTATCCGCCGTTCCCTCTTCCATAATCCCCCTCCCAAACCCCCCTCTCACTCCGAGGTACATTATAATGGAGGGTTAAATTGCGTCAAATGCGGCTCCAGTTCTGCGCATCTTTGTTCATGGAAGTCAGCTTCCAACTACGTCAGGCTCAACCAACGAGCCCTATTGCTCTCTACCCAACTCTCTGTTTCTGGGAATGTGTTGAAAAACAGAAGGGGAGTTGTGAGGGCTGCAACAATCGAAGAAATTGAAGCAGAGAAAACATTGATCGAGAAAGATGTAAAAGCAAGGATGGAAAAGACTATTGATACTGTTCGGTCTAATTTCAATTCAATTAGGACCGGGAGATCAAATCCTGCCATGCTTGATAAGATTGAGGTGGAGTATTACGGCAGTCCAGTTAGCCTGAAGAGCATTGCTCAAATTAGTACACCTGATGCAAGCTCACTCTTGGTCCAGCCATATGATAAATCCAGCTTAAAGTCAATAGAGAAGGCCATAGTCAACTCTGACTTGGGATTGACTCCAAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACATCCGAAAGAAGAAAGCAGGCGGTCAGTGGTGCATACTACTGTGATGTCCTTTTCATCAACAACATCCAGAAATATCCTAATTCACTCCTTGAGAAAAAACTTTCGGAAGATAATGTTAAGGACTTGTCAAGTGATTTGCAGAAACTGACGGATGACTATATGAAGAAGATTGATGTCTTATACAAGCAAAAAGAGAAGGAATTGTTGAAGGTATGA

Protein sequence

MATPFSATTSIRRSLFHNPPPKPPSHSEVHYNGGLNCVKCGSSSAHLCSWKSASNYVRLNQRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKQAVSGAYYCDVLFINNIQKYPNSLLEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV

Homology

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BLAST of IVF0008755 vs. ExPASy Swiss-Prot
Match: P82231 (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea OX=3562 GN=RRF PE=1 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.6e-69
Identity = 146/246 (59.35%), Postives = 190/246 (77.24%), Query Frame = 0


Query: 34  GLNCVKCGSSSAHLCSWKSASNYVRLNQRALLLSTQLSVSGNVLKNRRGVVRAATIEEIE 93
           G++ ++C  +  ++  W+S++NYVR++      S + +V    L+NR G  R AT+EE+E
Sbjct: 27  GVSDMECNIARTNVSVWRSSANYVRMDCGVKKFSGK-AVVVKQLQNRAGTFRCATMEEVE 86

Query: 94  AEKTLIEKDVKARMEKTIDTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQIST 153
           AEK+LIE + K RMEKTI+T+RSNFNS+RT R++P MLD+IEVEYYG+PVSLKSIAQIST
Sbjct: 87  AEKSLIETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQIST 146

Query: 154 PDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKQ---AVSG 213
           PDASSLL+ PYDKSSLK+IEKAIV S LG++PNNDGEVIRL+LP LTS+RRK+    VS 
Sbjct: 147 PDASSLLISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSK 206

Query: 214 AYYCDVLFINNIQK-----YPNSLLEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKE 272
                 + + NI++     Y     EKKLSEDNVKDLS+DLQKLTD+YMKK++ +YKQKE
Sbjct: 207 LAEEGKVAVRNIRRDALKSYEKLEKEKKLSEDNVKDLSADLQKLTDEYMKKVESIYKQKE 266

[Close]

BLAST of IVF0008755 vs. ExPASy Swiss-Prot
Match: Q9M1X0 (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RRF PE=2 SV=2)

HSP 1 Score: 256.9 bits (655), Expect = 2.5e-67
Identity = 148/220 (67.27%), Postives = 174/220 (79.09%), Query Frame = 0


Query: 64  LLLSTQLSVSGNVLKNR----RGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFN 123
           L L   +++SG  +  R    R V+R+ATIEEIEAEK+ IE DVK++MEKTI+T+R++FN
Sbjct: 56  LPLGAGVNLSGGPVVKRSLQKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFN 115

Query: 124 SIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS 183
           SIRTGRSN AMLDKIEVEYYGSPVSLKSIAQISTPD SSLL+QPYDKSSLK+IEKAIVNS
Sbjct: 116 SIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVNS 175

Query: 184 DLGLTPNNDGEVIRLTLPQLTSERR--------KQAVSGAYYCDVLFINNIQKYPNSLLE 243
           DLG+TPNNDG+VIRL+LP LTS+RR        KQ+  G      +  + ++ Y     E
Sbjct: 176 DLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEKE 235

Query: 244 KKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 272
           KKLSEDNVKDLSSDLQKL D YMKKI+ LYKQKEKEL+KV
Sbjct: 236 KKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275

[Close]

BLAST of IVF0008755 vs. ExPASy Swiss-Prot
Match: P37706 (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota OX=4039 GN=RRF PE=2 SV=2)

HSP 1 Score: 251.1 bits (640), Expect = 1.4e-65
Identity = 140/230 (60.87%), Postives = 175/230 (76.09%), Query Frame = 0


Query: 50  WKSASNYVRLNQRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEK 109
           W +A+NYV++       + +  V   + + R G ++ AT+EEIEAEK+LIEK VK RMEK
Sbjct: 1   WTAAANYVKIKVGTGKFARKTVV---LSQKRTGTLKCATMEEIEAEKSLIEKSVKERMEK 60

Query: 110 TIDTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSL 169
           TI+ V+++FNSIRT RSNP MLDKI+VEYYG+P SLKSIAQISTPD+SSLLV PYDKSSL
Sbjct: 61  TIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSL 120

Query: 170 KSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERR--------KQAVSGAYYCDVLFINN 229
           K IEKAIVNSDLG+TPNNDG+VIRL++PQLT++RR        KQA  G      +  + 
Sbjct: 121 KDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVALRNIRRDA 180

Query: 230 IQKYPNSLLEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 272
           I+ Y     EKKLSEDNVKDLSSDLQK+ D+Y+KK+D ++KQKEKEL+ V
Sbjct: 181 IKSYDKLEKEKKLSEDNVKDLSSDLQKVIDEYIKKVDSIFKQKEKELMTV 227

[Close]

BLAST of IVF0008755 vs. ExPASy Swiss-Prot
Match: A2YMU2 (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26546 PE=1 SV=2)

HSP 1 Score: 236.5 bits (602), Expect = 3.5e-61
Identity = 130/228 (57.02%), Postives = 175/228 (76.75%), Query Frame = 0


Query: 52  SASNYVRLNQRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTI 111
           S++N++ L    +   ++  +  N   ++R V+R ATIEEIEAEK++IE   + RMEK I
Sbjct: 41  SSTNFMSLRAGPMRFYSRPLILQN--SDKRAVLRHATIEEIEAEKSVIEDQARERMEKAI 100

Query: 112 DTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKS 171
           +TV++NFN++RTGR+NPAMLD+IEVEYYG+PV+LKSIAQI+TPDA+SLL+QPYDKSSLK 
Sbjct: 101 ETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKL 160

Query: 172 IEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKQ--------AVSGAYYCDVLFINNIQ 231
           IEK IV ++LG+TP+NDGEVIR+T+P LTS+RRK+        A  G      +  + I+
Sbjct: 161 IEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDAIK 220

Query: 232 KYPNSLLEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 272
            Y     EKKLSEDNVKDLS+DLQK+TD+YMKKI+ + KQKE+EL+K+
Sbjct: 221 AYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266

[Close]

BLAST of IVF0008755 vs. ExPASy Swiss-Prot
Match: A3BLC3 (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0570700 PE=2 SV=2)

HSP 1 Score: 236.5 bits (602), Expect = 3.5e-61
Identity = 130/228 (57.02%), Postives = 175/228 (76.75%), Query Frame = 0


Query: 52  SASNYVRLNQRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTI 111
           S++N++ L    +   ++  +  N   ++R V+R ATIEEIEAEK++IE   + RMEK I
Sbjct: 41  SSTNFMSLRAGPMRFYSRPLILQN--SDKRAVLRHATIEEIEAEKSVIEDQARERMEKAI 100

Query: 112 DTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKS 171
           +TV++NFN++RTGR+NPAMLD+IEVEYYG+PV+LKSIAQI+TPDA+SLL+QPYDKSSLK 
Sbjct: 101 ETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSLKL 160

Query: 172 IEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKQ--------AVSGAYYCDVLFINNIQ 231
           IEK IV ++LG+TP+NDGEVIR+T+P LTS+RRK+        A  G      +  + I+
Sbjct: 161 IEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAIRNIRRDAIK 220

Query: 232 KYPNSLLEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 272
            Y     EKKLSEDNVKDLS+DLQK+TD+YMKKI+ + KQKE+EL+K+
Sbjct: 221 AYDKLEKEKKLSEDNVKDLSADLQKVTDEYMKKIEAIQKQKEQELMKI 266

[Close]

BLAST of IVF0008755 vs. ExPASy TrEMBL
Match: A0A1S3BMN4 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491322 PE=3 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 3.0e-119
Identity = 244/279 (87.46%), Postives = 248/279 (88.89%), Query Frame = 0


Query: 1   MATPFSATTSIRRSLFHNPPPKPPSHSEVHYNGGLNCVKCGSSSAHLCSWKSASNYVRLN 60
           MATPFSATTSIRRSLFHNPPPK P  S   YNGGLNCVKCGSSSAHLCSWKSASNYVRLN
Sbjct: 1   MATPFSATTSIRRSLFHNPPPK-PLLSLRDYNGGLNCVKCGSSSAHLCSWKSASNYVRLN 60

Query: 61  QRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS 120
           QRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS
Sbjct: 61  QRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS 120

Query: 121 IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 180
           IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD
Sbjct: 121 IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 180

Query: 181 LGLTPNNDGEVIRLTLPQLTSERR--------KQAVSGAYYCDVLFINNIQKYPNSLLEK 240
           LGLTPNNDGEVIRLTLPQLTSERR        KQA  G      +  + ++ Y     EK
Sbjct: 181 LGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEK 240

Query: 241 KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 272
           KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]

BLAST of IVF0008755 vs. ExPASy TrEMBL
Match: A0A1S3BMY6 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491322 PE=3 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.8e-117
Identity = 243/279 (87.10%), Postives = 247/279 (88.53%), Query Frame = 0


Query: 1   MATPFSATTSIRRSLFHNPPPKPPSHSEVHYNGGLNCVKCGSSSAHLCSWKSASNYVRLN 60
           MATPFSATTSIRRSLFHNPPPK P  S   YNGGLNCVKCGSSSAHLCSWKSASNYVRLN
Sbjct: 1   MATPFSATTSIRRSLFHNPPPK-PLLSLRDYNGGLNCVKCGSSSAHLCSWKSASNYVRLN 60

Query: 61  QRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS 120
           QRALLLSTQLSVSGNVLKN RGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS
Sbjct: 61  QRALLLSTQLSVSGNVLKN-RGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS 120

Query: 121 IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 180
           IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD
Sbjct: 121 IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 180

Query: 181 LGLTPNNDGEVIRLTLPQLTSERR--------KQAVSGAYYCDVLFINNIQKYPNSLLEK 240
           LGLTPNNDGEVIRLTLPQLTSERR        KQA  G      +  + ++ Y     EK
Sbjct: 181 LGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEK 240

Query: 241 KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 272
           KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 277

[Close]

BLAST of IVF0008755 vs. ExPASy TrEMBL
Match: A0A0A0KJG4 (Ribosome-recycling factor, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G410660 PE=3 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 2.1e-112
Identity = 232/279 (83.15%), Postives = 242/279 (86.74%), Query Frame = 0


Query: 1   MATPFSATTSIRRSLFHNPPPKPPSHSEVHYNGGLNCVKCGSSSAHLCSWKSASNYVRLN 60
           MATPFSAT SIRRSLF NPPPK    S   YNGGLNCVKCGS +AHLCSWKSASNYVRLN
Sbjct: 1   MATPFSATASIRRSLFQNPPPK-SLLSLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLN 60

Query: 61  QRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS 120
           ++AL++STQLSVSGNV KNRR VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS
Sbjct: 61  RQALVISTQLSVSGNVFKNRRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS 120

Query: 121 IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 180
           IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD
Sbjct: 121 IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 180

Query: 181 LGLTPNNDGEVIRLTLPQLTSERR--------KQAVSGAYYCDVLFINNIQKYPNSLLEK 240
           LG+TPNNDGEVIRLTLPQLTSERR        KQA  G      +  + ++ Y     EK
Sbjct: 181 LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEK 240

Query: 241 KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 272
           KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]

BLAST of IVF0008755 vs. ExPASy TrEMBL
Match: A0A5A7URP7 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00360 PE=3 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 8.1e-101
Identity = 214/267 (80.15%), Postives = 218/267 (81.65%), Query Frame = 0


Query: 31  YNGGLNCVKCGSSSAHLCSWKSASNYVRLNQRALLLSTQLSVSGNVLKNRR--------- 90
           YNGGLNCVKCGSSSAHLCSWKSASNYVRLNQRALLLSTQLSVSGNVLKNR          
Sbjct: 7   YNGGLNCVKCGSSSAHLCSWKSASNYVRLNQRALLLSTQLSVSGNVLKNRHVFDFYFVYF 66

Query: 91  --------------GVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSIRTGRSN 150
                         GVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSIRTGRSN
Sbjct: 67  LTSLVALCVPCELVGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNSIRTGRSN 126

Query: 151 PAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNN 210
           PAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNN
Sbjct: 127 PAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNN 186

Query: 211 DGEVIRLTLPQLTSERR--------KQAVSGAYYCDVLFINNIQKYPNSLLEKKLSEDNV 267
           DGEVIRLTLPQLTSERR        KQA  G      +  + ++ Y     EKKLSEDNV
Sbjct: 187 DGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEKKLSEDNV 246

[Close]

BLAST of IVF0008755 vs. ExPASy TrEMBL
Match: A0A6J1DZ32 (Ribosome-recycling factor, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111025588 PE=3 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 4.9e-98
Identity = 209/286 (73.08%), Postives = 233/286 (81.47%), Query Frame = 0


Query: 1   MATPFSATTSIRRSLFHNPPPKPPSHSEVH-------YNGGLNCVKCGSSSAHLCSWKSA 60
           MATPFS T S+ RS+F       P H+          YNGGLNCVKCG ++AH+ SW SA
Sbjct: 1   MATPFS-TISV-RSVFQ------PKHNRARALLSLRDYNGGLNCVKCGLNTAHVYSWNSA 60

Query: 61  SNYVRLNQRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDT 120
           +NYVRL + AL++S+ + VSG++LKNRRGVV+AATIEEIEAEKTLIEKDV++RMEKTIDT
Sbjct: 61  ANYVRLKRHALMISSHVIVSGSLLKNRRGVVKAATIEEIEAEKTLIEKDVRSRMEKTIDT 120

Query: 121 VRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIE 180
           VRSNFNSIRTGR+NP+MLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIE
Sbjct: 121 VRSNFNSIRTGRANPSMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIE 180

Query: 181 KAIVNSDLGLTPNNDGEVIRLTLPQLTSERR--------KQAVSGAYYCDVLFINNIQKY 240
           KAIVNSDLGLTPNNDGEVIRLTLPQLTSERR        KQA  G      +  + ++ Y
Sbjct: 181 KAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAY 240

Query: 241 PNSLLEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 272
                EKKLSEDNVKDLSSDLQKLTDDYMKKIDV+YKQKEKELLKV
Sbjct: 241 EKLEKEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 278

[Close]

BLAST of IVF0008755 vs. NCBI nr
Match: XP_008449432.1 (PREDICTED: ribosome-recycling factor, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 441 bits (1135), Expect = 1.84e-154
Identity = 244/279 (87.46%), Postives = 248/279 (88.89%), Query Frame = 0


Query: 1   MATPFSATTSIRRSLFHNPPPKPPSHSEVHYNGGLNCVKCGSSSAHLCSWKSASNYVRLN 60
           MATPFSATTSIRRSLFHNPPPKP   S   YNGGLNCVKCGSSSAHLCSWKSASNYVRLN
Sbjct: 1   MATPFSATTSIRRSLFHNPPPKPLL-SLRDYNGGLNCVKCGSSSAHLCSWKSASNYVRLN 60

Query: 61  QRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS 120
           QRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS
Sbjct: 61  QRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS 120

Query: 121 IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 180
           IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD
Sbjct: 121 IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 180

Query: 181 LGLTPNNDGEVIRLTLPQLTSERRK--------QAVSGAYYCDVLFINNIQKYPNSLLEK 240
           LGLTPNNDGEVIRLTLPQLTSERRK        QA  G      +  + ++ Y     EK
Sbjct: 181 LGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEK 240

Query: 241 KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 271
           KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]

BLAST of IVF0008755 vs. NCBI nr
Match: XP_008449433.1 (PREDICTED: ribosome-recycling factor, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 435 bits (1118), Expect = 6.87e-152
Identity = 243/279 (87.10%), Postives = 247/279 (88.53%), Query Frame = 0


Query: 1   MATPFSATTSIRRSLFHNPPPKPPSHSEVHYNGGLNCVKCGSSSAHLCSWKSASNYVRLN 60
           MATPFSATTSIRRSLFHNPPPKP   S   YNGGLNCVKCGSSSAHLCSWKSASNYVRLN
Sbjct: 1   MATPFSATTSIRRSLFHNPPPKPLL-SLRDYNGGLNCVKCGSSSAHLCSWKSASNYVRLN 60

Query: 61  QRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS 120
           QRALLLSTQLSVSGNVLKNR GVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS
Sbjct: 61  QRALLLSTQLSVSGNVLKNR-GVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS 120

Query: 121 IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 180
           IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD
Sbjct: 121 IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 180

Query: 181 LGLTPNNDGEVIRLTLPQLTSERRK--------QAVSGAYYCDVLFINNIQKYPNSLLEK 240
           LGLTPNNDGEVIRLTLPQLTSERRK        QA  G      +  + ++ Y     EK
Sbjct: 181 LGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEK 240

Query: 241 KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 271
           KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 277

[Close]

BLAST of IVF0008755 vs. NCBI nr
Match: XP_004140097.1 (ribosome-recycling factor, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 419 bits (1076), Expect = 1.77e-145
Identity = 232/279 (83.15%), Postives = 242/279 (86.74%), Query Frame = 0


Query: 1   MATPFSATTSIRRSLFHNPPPKPPSHSEVHYNGGLNCVKCGSSSAHLCSWKSASNYVRLN 60
           MATPFSAT SIRRSLF NPPPK    S   YNGGLNCVKCGS +AHLCSWKSASNYVRLN
Sbjct: 1   MATPFSATASIRRSLFQNPPPKSLL-SLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLN 60

Query: 61  QRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS 120
           ++AL++STQLSVSGNV KNRR VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS
Sbjct: 61  RQALVISTQLSVSGNVFKNRRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS 120

Query: 121 IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 180
           IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD
Sbjct: 121 IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 180

Query: 181 LGLTPNNDGEVIRLTLPQLTSERRK--------QAVSGAYYCDVLFINNIQKYPNSLLEK 240
           LG+TPNNDGEVIRLTLPQLTSERRK        QA  G      +  + ++ Y     EK
Sbjct: 181 LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEK 240

Query: 241 KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 271
           KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 278

[Close]

BLAST of IVF0008755 vs. NCBI nr
Match: XP_038888223.1 (ribosome-recycling factor, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 414 bits (1064), Expect = 1.32e-143
Identity = 230/282 (81.56%), Postives = 244/282 (86.52%), Query Frame = 0


Query: 1   MATPFSATTSIRRSLFH---NPPPKPPSHSEVHYNGGLNCVKCGSSSAHLCSWKSASNYV 60
           MATPFS+TTS+RRS+F    NPPPK    S   YN GLNCVKCGSS+ HLCSWKSASNYV
Sbjct: 1   MATPFSSTTSVRRSVFQLTQNPPPKALL-SLRDYNAGLNCVKCGSSTTHLCSWKSASNYV 60

Query: 61  RLNQRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSN 120
           RL+++AL+LSTQLSVSGN+LKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSN
Sbjct: 61  RLHRQALVLSTQLSVSGNLLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSN 120

Query: 121 FNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIV 180
           FNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIV
Sbjct: 121 FNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIV 180

Query: 181 NSDLGLTPNNDGEVIRLTLPQLTSERRK--------QAVSGAYYCDVLFINNIQKYPNSL 240
           NSDLGLTPNNDGEVIRLTLPQLTSERRK        QA  G      +  + ++ Y    
Sbjct: 181 NSDLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLE 240

Query: 241 LEKKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 271
            EKKLSEDNVKDLSSDLQKLTDDYMKKIDV+YKQKEKELLKV
Sbjct: 241 KEKKLSEDNVKDLSSDLQKLTDDYMKKIDVIYKQKEKELLKV 281

[Close]

BLAST of IVF0008755 vs. NCBI nr
Match: XP_011657524.1 (ribosome-recycling factor, chloroplastic isoform X2 [Cucumis sativus] >KGN48187.2 hypothetical protein Csa_004124 [Cucumis sativus])

HSP 1 Score: 413 bits (1061), Expect = 3.28e-143
Identity = 231/279 (82.80%), Postives = 241/279 (86.38%), Query Frame = 0


Query: 1   MATPFSATTSIRRSLFHNPPPKPPSHSEVHYNGGLNCVKCGSSSAHLCSWKSASNYVRLN 60
           MATPFSAT SIRRSLF NPPPK    S   YNGGLNCVKCGS +AHLCSWKSASNYVRLN
Sbjct: 1   MATPFSATASIRRSLFQNPPPKSLL-SLRDYNGGLNCVKCGSITAHLCSWKSASNYVRLN 60

Query: 61  QRALLLSTQLSVSGNVLKNRRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS 120
           ++AL++STQLSVSGNV KNR  VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS
Sbjct: 61  RQALVISTQLSVSGNVFKNRL-VVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFNS 120

Query: 121 IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 180
           IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD
Sbjct: 121 IRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 180

Query: 181 LGLTPNNDGEVIRLTLPQLTSERRK--------QAVSGAYYCDVLFINNIQKYPNSLLEK 240
           LG+TPNNDGEVIRLTLPQLTSERRK        QA  G      +  + ++ Y     EK
Sbjct: 181 LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLEKEK 240

Query: 241 KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 271
           KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV
Sbjct: 241 KLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 277

[Close]

BLAST of IVF0008755 vs. TAIR 10
Match: AT3G63190.1 (ribosome recycling factor, chloroplast precursor )

HSP 1 Score: 256.9 bits (655), Expect = 1.8e-68
Identity = 148/220 (67.27%), Postives = 174/220 (79.09%), Query Frame = 0


Query: 64  LLLSTQLSVSGNVLKNR----RGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFN 123
           L L   +++SG  +  R    R V+R+ATIEEIEAEK+ IE DVK++MEKTI+T+R++FN
Sbjct: 56  LPLGAGVNLSGGPVVKRSLQKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFN 115

Query: 124 SIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS 183
           SIRTGRSN AMLDKIEVEYYGSPVSLKSIAQISTPD SSLL+QPYDKSSLK+IEKAIVNS
Sbjct: 116 SIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVNS 175

Query: 184 DLGLTPNNDGEVIRLTLPQLTSERR--------KQAVSGAYYCDVLFINNIQKYPNSLLE 243
           DLG+TPNNDG+VIRL+LP LTS+RR        KQ+  G      +  + ++ Y     E
Sbjct: 176 DLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVALRNIRRDALKSYDKLEKE 235

Query: 244 KKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKELLKV 272
           KKLSEDNVKDLSSDLQKL D YMKKI+ LYKQKEKEL+KV
Sbjct: 236 KKLSEDNVKDLSSDLQKLIDVYMKKIEELYKQKEKELMKV 275

[Close]

BLAST of IVF0008755 vs. TAIR 10
Match: AT3G01800.1 (Ribosome recycling factor )

HSP 1 Score: 90.1 bits (222), Expect = 2.9e-18
Identity = 57/176 (32.39%), Postives = 91/176 (51.70%), Query Frame = 0


Query: 99  IEKDVKARMEKTIDTVRSNFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASS 158
           ++    ++ME  ID +  +   +RTGR+ P MLD I VE  G  + L  +A +S  D  +
Sbjct: 89  VKAAASSQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKT 148

Query: 159 LLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKQAVSGAYYCDVLF 218
           L V PYD  ++K +EKAIV S LGL P  DG+ +  ++P LT E  +           + 
Sbjct: 149 LSVNPYDPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVV 208

Query: 219 INNIQKYPNSLLE------KKLSEDNVKDLSSDLQKLTDDYMKKIDVLYKQKEKEL 269
             +I++     L+        L +D VK L  ++ +LT  ++K  + + K KEKE+
Sbjct: 209 KQSIRRARQKALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSKEKEI 264

The following BLAST results are available for this feature:

BLAST of IVF0008755 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82231	1.6e-69	59.35	Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea OX=3562 GN=RRF PE=...	[more]
Q9M1X0	2.5e-67	67.27	Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RRF ...	[more]
P37706	1.4e-65	60.87	Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota OX=4039 GN=...	[more]
A2YMU2	3.5e-61	57.02	Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica OX=39946 ...	[more]
A3BLC3	3.5e-61	57.02	Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of IVF0008755 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BMN4	3.0e-119	87.46	Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491322...	[more]
A0A1S3BMY6	2.8e-117	87.10	Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491322...	[more]
A0A0A0KJG4	2.1e-112	83.15	Ribosome-recycling factor, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G410...	[more]
A0A5A7URP7	8.1e-101	80.15	Ribosome-recycling factor, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1DZ32	4.9e-98	73.08	Ribosome-recycling factor, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of IVF0008755 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449432.1	1.84e-154	87.46	PREDICTED: ribosome-recycling factor, chloroplastic isoform X1 [Cucumis melo]	[more]
XP_008449433.1	6.87e-152	87.10	PREDICTED: ribosome-recycling factor, chloroplastic isoform X2 [Cucumis melo]	[more]
XP_004140097.1	1.77e-145	83.15	ribosome-recycling factor, chloroplastic isoform X1 [Cucumis sativus]	[more]
XP_038888223.1	1.32e-143	81.56	ribosome-recycling factor, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_011657524.1	3.28e-143	82.80	ribosome-recycling factor, chloroplastic isoform X2 [Cucumis sativus] >KGN48187....	[more]

BLAST of IVF0008755 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63190.1	1.8e-68	67.27	ribosome recycling factor, chloroplast precursor	[more]
AT3G01800.1	2.9e-18	32.39	Ribosome recycling factor	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 232..252
None	No IPR available	GENE3D	3.30.1360.40		coord: 125..199 e-value: 8.4E-51 score: 173.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR20982:SF3	MITOCHONDRIAL RIBOSOME RECYCLING FACTOR	coord: 32..209
None	No IPR available	PANTHER	PTHR20982:SF3	MITOCHONDRIAL RIBOSOME RECYCLING FACTOR	coord: 223..270
IPR036191	RRF superfamily	GENE3D	1.10.132.20		coord: 104..269 e-value: 8.4E-51 score: 173.8
IPR036191	RRF superfamily	SUPERFAMILY	55194	Ribosome recycling factor, RRF	coord: 99..270
IPR023584	Ribosome recycling factor domain	PFAM	PF01765	RRF	coord: 116..269 e-value: 1.1E-46 score: 158.7
IPR002661	Ribosome recycling factor	TIGRFAM	TIGR00496	TIGR00496	coord: 104..271 e-value: 1.3E-48 score: 162.9
IPR002661	Ribosome recycling factor	PANTHER	PTHR20982	RIBOSOME RECYCLING FACTOR	coord: 223..270
IPR002661	Ribosome recycling factor	PANTHER	PTHR20982	RIBOSOME RECYCLING FACTOR	coord: 32..209
IPR002661	Ribosome recycling factor	HAMAP	MF_00040	RRF	coord: 97..271 score: 21.420757
IPR002661	Ribosome recycling factor	CDD	cd00520	RRF	coord: 99..269 e-value: 3.67879E-63 score: 194.401

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0008755.1	IVF0008755.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0032544	plastid translation
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0043023	ribosomal large subunit binding