IVF0019303 (gene) Melon (IVF77) v1

Overview
NameIVF0019303
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr05: 25046936 .. 25047591 (+)
RNA-Seq ExpressionIVF0019303
SyntenyIVF0019303
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTTCTTCTTCTTTTCCTTATGATCATGCTTCAAGCTCAAGGTATGTACCAATATCATTATTGTTTAGTTTTGACGTCAATATATATATATATATATATATATATATATATTCCAACTTGGGTTTTGTTTTGTTTTGAGTTTCGATGTCTTTCGTTCTTGTAAGTTCTGAAAATGAAAGAAAAAAATAAATAAATAAAAATTCGTTTGTTTTTGTAAGAATAATATTTTTAACAGTTTCTCCTATATTTATTTATTTTTTGTTTCGTTTTAAATACTTACAGAAAGTTCGAATATTCTTTTAAGAAAAGAGAAACCTAACGAAACATAAATTTTAATAACAAAAAGCTACAATTTTAACGTAATAGTGTTTCTGTGCACTTGTAAAGTTATTCGACATCCTTTTGTTAAGCAGAAAAAATGATTTTTTTCTTCTTTTTTTTGAAGGGATTCGGTTGTTGGAGAAAGGGATGAACAAAGAGTACAAGAAAAGTGGAGGTTTTTTGGTAAGTAAAAATGGTGGAGATAACTCATTGATGACAATGAAGAAGAGAGCCCCAATTAGGGCTTTAAGAAAACCATATTCCCATTGGCTTCCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTGA

mRNA sequence

ATGGCCGTTCTTCTTCTTTTCCTTATGATCATGCTTCAAGCTCAAGGGATTCGGTTGTTGGAGAAAGGGATGAACAAAGAGTACAAGAAAAGTGGAGGTTTTTTGGTAAGTAAAAATGGTGGAGATAACTCATTGATGACAATGAAGAAGAGAGCCCCAATTAGGGCTTTAAGAAAACCATATTCCCATTGGCTTCCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTGA

Coding sequence (CDS)

ATGGCCGTTCTTCTTCTTTTCCTTATGATCATGCTTCAAGCTCAAGGGATTCGGTTGTTGGAGAAAGGGATGAACAAAGAGTACAAGAAAAGTGGAGGTTTTTTGGTAAGTAAAAATGGTGGAGATAACTCATTGATGACAATGAAGAAGAGAGCCCCAATTAGGGCTTTAAGAAAACCATATTCCCATTGGCTTCCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTGA

Protein sequence

MAVLLLFLMIMLQAQGIRLLEKGMNKEYKKSGGFLVSKNGGDNSLMTMKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH
Homology
BLAST of IVF0019303 vs. ExPASy TrEMBL
Match: A0A0A0LJ48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.9e-35
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 0

Query: 1  MAVLLLFLMIMLQAQGIRLLEKGMNKEYKKSGGFLVSKNGGDNSLMTMKKRAPIRALRKP 60
          MAVLLLFLMIMLQAQGIRLLEKGM+KEYKKSGGFLV+KNGGD SLMTMKKRAPIRALRKP
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGD-SLMTMKKRAPIRALRKP 60

Query: 61 YSHWLPGIQEDYHGPRSHKSRHH 84
          YSHWLPGIQEDYHGPRSHKSRHH
Sbjct: 61 YSHWLPGIQEDYHGPRSHKSRHH 82

BLAST of IVF0019303 vs. ExPASy TrEMBL
Match: A0A5N6RX03 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020903 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.1e-07
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 0

Query: 1  MAVLLLFLMIMLQAQGIRL----LEKGMNKEYKKSGGFLVSK----NGGDNSLMTMKKRA 60
          +++LLL L++  +AQGIRL    +  G  K+++  G  L++       G++   TMKKR 
Sbjct: 7  LSLLLLCLLLSHEAQGIRLDKMFMSLGQQKQHEADGNALIAGRILCKDGEHCSGTMKKRV 66

Query: 61 PIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 84
            R L K   HWLP I EDY+GPRSH+ RHH
Sbjct: 67 S-RVLSKKSHHWLPSIHEDYYGPRSHRPRHH 96

BLAST of IVF0019303 vs. ExPASy TrEMBL
Match: A0A6M2ES64 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.3e-04
Identity = 41/100 (41.00%), Postives = 50/100 (50.00%), Query Frame = 0

Query: 1   MAVLLLFLMIMLQAQGIRL-------------LEKGMNKEYKKSGGFL----VSKNGGDN 60
           +A LLL   ++ QAQGIRL              EK  +KE K  GG L    + K G   
Sbjct: 6   VASLLLLSFLLQQAQGIRLEKGFKQVGAQKVQAEKSPSKE-KSDGGVLGEAILCKEG--Q 65

Query: 61  SLMTMKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 84
              TM+KR      +K   HWLP I EDY+GPR+HK  HH
Sbjct: 66  CTGTMEKRVSKSVSKKSSHHWLPSIHEDYYGPRNHKPNHH 102

BLAST of IVF0019303 vs. NCBI nr
Match: KAG6586348.1 (Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.2 bits (191), Expect = 1.53e-14
Identity = 46/73 (63.01%), Postives = 55/73 (75.34%), Query Frame = 0

Query: 1  MAVLLLFLMIMLQAQGIRLLEKGMNKEYKKSGGFLVSKNGGDNSLMTMKKRAPIRALRKP 60
          MAVLLLFL+I  +A+GIRLL+K M+KE K++GG L+          TMK RAP +A RKP
Sbjct: 6  MAVLLLFLIIS-EAEGIRLLDKRMSKEDKRNGGDLLG---------TMKWRAPNKAWRKP 65

Query: 61 YSHWLPGIQEDYH 73
          YSHWLPGIQEDYH
Sbjct: 66 YSHWLPGIQEDYH 68

BLAST of IVF0019303 vs. NCBI nr
Match: KAE8126159.1 (hypothetical protein FH972_020903 [Carpinus fangiana])

HSP 1 Score: 61.6 bits (148), Expect = 4.28e-10
Identity = 39/90 (43.33%), Postives = 54/90 (60.00%), Query Frame = 0

Query: 2  AVLLLFLMIMLQAQGIRL----LEKGMNKEYKKSGGFLVSKN----GGDNSLMTMKKRAP 61
          ++LLL L++  +AQGIRL    +  G  K+++  G  L++       G++   TMKKR  
Sbjct: 8  SLLLLCLLLSHEAQGIRLDKMFMSLGQQKQHEADGNALIAGRILCKDGEHCSGTMKKRVS 67

Query: 62 IRALRKPYSHWLPGIQEDYHGPRSHKSRHH 83
           R L K   HWLP I EDY+GPRSH+ RHH
Sbjct: 68 -RVLSKKSHHWLPSIHEDYYGPRSHRPRHH 96

BLAST of IVF0019303 vs. NCBI nr
Match: KAG6769267.1 (hypothetical protein POTOM_024887 [Populus tomentosa])

HSP 1 Score: 53.9 bits (128), Expect = 4.79e-07
Identity = 39/97 (40.21%), Postives = 48/97 (49.48%), Query Frame = 0

Query: 4  LLLFLMIMLQAQGIRL-------------LEKGMNKEYKKSGGFL----VSKNGGDNSLM 63
          LLL   ++ QAQGIRL              EK  +KE    GG L    + K G      
Sbjct: 9  LLLLSFLLQQAQGIRLEKGFKQVGAQKVQAEKSPSKEKSNDGGVLGEAILCKEG------ 68

Query: 64 TMKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 83
          TM+KR      +K   HWLP I EDY+GPR+HK +HH
Sbjct: 69 TMEKRVSKSVSKKFSHHWLPSIHEDYYGPRNHKPKHH 99

BLAST of IVF0019303 vs. NCBI nr
Match: KAB2023999.1 (hypothetical protein ES319_D06G057400v1 [Gossypium barbadense] >KAG4140981.1 hypothetical protein ERO13_D06G050300v2 [Gossypium hirsutum] >KJB64614.1 hypothetical protein B456_010G057200 [Gossypium raimondii] >TYI76183.1 hypothetical protein E1A91_D06G058600v1 [Gossypium mustelinum])

HSP 1 Score: 51.2 bits (121), Expect = 4.64e-06
Identity = 28/84 (33.33%), Postives = 46/84 (54.76%), Query Frame = 0

Query: 2  AVLLLFLMIMLQAQGIRLLE--KGMNKEYKKSGGFLVSKNGGDNSLMTMKKRAPIRALRK 61
          ++L+LF++ +   QGIRL +  K    +  + G  + + NG    ++  K+       ++
Sbjct: 9  SLLVLFIIYLSSVQGIRLEKSFKSAGHDPIQEGALMKNSNGAMGDILLCKQGHCTGTKKR 68

Query: 62 PYSHWLPGIQEDYHGPRSHKSRHH 83
             HWLP I EDY+GPR H+ RHH
Sbjct: 69 KSHHWLPSIHEDYYGPRKHRPRHH 92

BLAST of IVF0019303 vs. NCBI nr
Match: KAG2671394.1 (hypothetical protein I3760_14G133800 [Carya illinoinensis])

HSP 1 Score: 48.9 bits (115), Expect = 2.66e-05
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 0

Query: 41 GDNSLMTMKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 83
          G  S  TMKKR  + ++ K   HWLP I EDY+GPRSH+ RHH
Sbjct: 37 GHCSSGTMKKR--VASVSKKSHHWLPFIHEDYYGPRSHRPRHH 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJ486.9e-3596.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1[more]
A0A5N6RX036.1e-0742.86Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020903 PE=4 SV=1[more]
A0A6M2ES646.3e-0441.00Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6586348.11.53e-1463.01Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma ... [more]
KAE8126159.14.28e-1043.33hypothetical protein FH972_020903 [Carpinus fangiana][more]
KAG6769267.14.79e-0740.21hypothetical protein POTOM_024887 [Populus tomentosa][more]
KAB2023999.14.64e-0633.33hypothetical protein ES319_D06G057400v1 [Gossypium barbadense] >KAG4140981.1 hyp... [more]
KAG2671394.12.66e-0555.81hypothetical protein I3760_14G133800 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0019303.1IVF0019303.1mRNA