PI0017086 (gene) Melon (PI 482460) v1

Overview


Name	PI0017086
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Photosystem II CP43 reaction center protein
Location	tig00003741: 10038 .. 10436 (+)
RNA-Seq Expression	PI0017086
Synteny	PI0017086

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAGACTATGCGTTTTTGGGATCTGCGTGCTCCTTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAGTAGACTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGGGGCGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGACTCCTCTTAACTGA

mRNA sequence

ATGCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAGACTATGCGTTTTTGGGATCTGCGTGCTCCTTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAGTAGACTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGGGGCGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGACTCCTCTTAACTGA

Coding sequence (CDS)

ATGCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAGACTATGCGTTTTTGGGATCTGCGTGCTCCTTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAGTAGACTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGGGGCGTAGCTACCGAAATTAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCTGCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGACTCCTCTTAACTGA

Protein sequence

MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

Homology

[Close]

BLAST of PI0017086 vs. ExPASy Swiss-Prot
Match: Q2QD93 (Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.6e-75
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 342 MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 401

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 402 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 461

Query: 121 DFEPVLFMTPLN 133
           DFEPVLFMTPLN
Sbjct: 462 DFEPVLFMTPLN 473

[Close]

BLAST of PI0017086 vs. ExPASy Swiss-Prot
Match: Q2VEI0 (Photosystem II CP43 reaction center protein OS=Solanum tuberosum OX=4113 GN=psbC PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 4.7e-75
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 342 MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 401

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFF FVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 402 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFFFVGHLWHAGRARAAAAGFEKGIDR 461

Query: 121 DFEPVLFMTPLN 133
           DFEPVLFMTPLN
Sbjct: 462 DFEPVLFMTPLN 473

[Close]

BLAST of PI0017086 vs. ExPASy Swiss-Prot
Match: A1XFV1 (Photosystem II CP43 reaction center protein OS=Nuphar advena OX=77108 GN=psbC PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 6.1e-75
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGE+IFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 342 MRSPTGEIIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 401

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFF FVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 402 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFFFVGHLWHAGRARAAAAGFEKGIDR 461

Query: 121 DFEPVLFMTPLN 133
           DFEPVLFMTPLN
Sbjct: 462 DFEPVLFMTPLN 473

[Close]

BLAST of PI0017086 vs. ExPASy Swiss-Prot
Match: Q6EW52 (Photosystem II CP43 reaction center protein OS=Nymphaea alba OX=34301 GN=psbC PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 6.1e-75
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGE+IFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 342 MRSPTGEIIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 401

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFF FVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 402 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFFFVGHLWHAGRARAAAAGFEKGIDR 461

Query: 121 DFEPVLFMTPLN 133
           DFEPVLFMTPLN
Sbjct: 462 DFEPVLFMTPLN 473

[Close]

BLAST of PI0017086 vs. ExPASy Swiss-Prot
Match: B1A931 (Photosystem II CP43 reaction center protein OS=Carica papaya OX=3649 GN=psbC PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 8.0e-75
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 342 MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 401

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 402 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 461

Query: 121 DFEPVLFMTPLN 133
           D EPVLFMTPLN
Sbjct: 462 DLEPVLFMTPLN 473

[Close]

BLAST of PI0017086 vs. ExPASy TrEMBL
Match: A0A218KG40 (Photosystem II CP43 reaction center protein OS=Cucumis sativus var. hardwickii OX=319220 GN=psbC PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 5.9e-73
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 330 MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 389

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 390 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 449

Query: 121 DFEPVLFMTPLN 133
           DFEPVLFMTPLN
Sbjct: 450 DFEPVLFMTPLN 461

[Close]

BLAST of PI0017086 vs. ExPASy TrEMBL
Match: A0A6B9TV55 (Photosystem II CP43 reaction center protein OS=Gonostegia hirta OX=648870 GN=psbC PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 5.9e-73
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 342 MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 401

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 402 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 461

Query: 121 DFEPVLFMTPLN 133
           DFEPVLFMTPLN
Sbjct: 462 DFEPVLFMTPLN 473

[Close]

BLAST of PI0017086 vs. ExPASy TrEMBL
Match: A0A6M3RWB3 (Photosystem II CP43 reaction center protein OS=Trichosanthes kirilowii OX=3677 GN=psbC PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 5.9e-73
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 342 MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 401

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 402 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 461

Query: 121 DFEPVLFMTPLN 133
           DFEPVLFMTPLN
Sbjct: 462 DFEPVLFMTPLN 473

[Close]

BLAST of PI0017086 vs. ExPASy TrEMBL
Match: A0A7G3STX1 (Photosystem II CP43 reaction center protein OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=psbC PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 5.9e-73
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 330 MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 389

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 390 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 449

Query: 121 DFEPVLFMTPLN 133
           DFEPVLFMTPLN
Sbjct: 450 DFEPVLFMTPLN 461

[Close]

BLAST of PI0017086 vs. ExPASy TrEMBL
Match: A0A482BG40 (Photosystem II CP43 reaction center protein OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=psbC PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 5.9e-73
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 342 MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 401

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 402 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 461

Query: 121 DFEPVLFMTPLN 133
           DFEPVLFMTPLN
Sbjct: 462 DFEPVLFMTPLN 473

[Close]

BLAST of PI0017086 vs. NCBI nr
Match: YP_009751902.1 (photosystem II 43 kDa protein [Cyclanthera pedata] >QIT04720.1 photosystem II 43 kDa protein [Cyclanthera pedata])

HSP 1 Score: 283.1 bits (723), Expect = 1.2e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 330 MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 389

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 390 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 449

Query: 121 DFEPVLFMTPLN 133
           DFEPVLFMTPLN
Sbjct: 450 DFEPVLFMTPLN 461

[Close]

BLAST of PI0017086 vs. NCBI nr
Match: YP_009776819.1 (photosystem II CP43 chlorophyll apoprotein [Phyllanthus emblica] >AFU94719.1 PsbC, partial [Phyllanthus urinaria] >QST15687.1 photosystem II CP43 chlorophyll apoprotein [Breynia fruticosa] >QUV75345.1 photosystem II CP43 chlorophyll apoprotein [Sauropus spatulifolius] >QJA27473.1 photosystem II CP43 chlorophyll apoprotein [Phyllanthus emblica] >QZR91622.1 PsbC [Phyllanthus emblica])

HSP 1 Score: 283.1 bits (723), Expect = 1.2e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 342 MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 401

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 402 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 461

Query: 121 DFEPVLFMTPLN 133
           DFEPVLFMTPLN
Sbjct: 462 DFEPVLFMTPLN 473

[Close]

BLAST of PI0017086 vs. NCBI nr
Match: YP_009501732.1 (photosystem II CP43 chlorophyll apoprotein [Passiflora serratifolia] >AXB38378.1 photosystem II CP43 chlorophyll apoprotein [Passiflora serratifolia])

HSP 1 Score: 283.1 bits (723), Expect = 1.2e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 342 MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 401

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 402 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 461

Query: 121 DFEPVLFMTPLN 133
           DFEPVLFMTPLN
Sbjct: 462 DFEPVLFMTPLN 473

[Close]

BLAST of PI0017086 vs. NCBI nr
Match: QVX28138.1 (photosystem II CP43 chlorophyll apoprotein [Passiflora mucronata])

HSP 1 Score: 283.1 bits (723), Expect = 1.2e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 356 MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 415

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 416 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 475

Query: 121 DFEPVLFMTPLN 133
           DFEPVLFMTPLN
Sbjct: 476 DFEPVLFMTPLN 487

[Close]

BLAST of PI0017086 vs. NCBI nr
Match: YP_009390301.1 (photosystem II CP43 chlorophyll apoprotein [Abelmoschus esculentus] >YP_010010167.1 photosystem II CP43 chlorophyll apoprotein [Abelmoschus manihot] >YP_010010254.1 photosystem II CP43 chlorophyll apoprotein [Abelmoschus sagittifolius] >YP_010010341.1 photosystem II CP43 chlorophyll apoprotein [Abelmoschus moschatus] >QHN51042.1 photosystem II CP43 chlorophyll apoprotein [Hibiscus taiwanensis] >QJE36397.1 photosystem II 44 kDa protein [Hibiscus mutabilis] >ARV86681.1 photosystem II CP43 chlorophyll apoprotein [Abelmoschus esculentus] >QOD41108.1 photosystem II CP43 chlorophyll apoprotein [Abelmoschus manihot] >QOD41195.1 photosystem II CP43 chlorophyll apoprotein [Abelmoschus sagittifolius])

HSP 1 Score: 283.1 bits (723), Expect = 1.2e-72
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 342 MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 401

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 402 GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 461

Query: 121 DFEPVLFMTPLN 133
           DFEPVLFMTPLN
Sbjct: 462 DFEPVLFMTPLN 473

[Close]

BLAST of PI0017086 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 278.9 bits (712), Expect = 2.2e-75
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 60
           MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL
Sbjct: 342 MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPL 401

Query: 61  GSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 120
           GSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR
Sbjct: 402 GSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDR 461

Query: 121 DFEPVLFMTPLN 133
           DFEPVL MTPLN
Sbjct: 462 DFEPVLSMTPLN 473

The following BLAST results are available for this feature:

BLAST of PI0017086 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD93	1.6e-75	100.00	Photosystem II CP43 reaction center protein OS=Cucumis sativus OX=3659 GN=psbC P...	[more]
Q2VEI0	4.7e-75	99.24	Photosystem II CP43 reaction center protein OS=Solanum tuberosum OX=4113 GN=psbC...	[more]
A1XFV1	6.1e-75	98.48	Photosystem II CP43 reaction center protein OS=Nuphar advena OX=77108 GN=psbC PE...	[more]
Q6EW52	6.1e-75	98.48	Photosystem II CP43 reaction center protein OS=Nymphaea alba OX=34301 GN=psbC PE...	[more]
B1A931	8.0e-75	99.24	Photosystem II CP43 reaction center protein OS=Carica papaya OX=3649 GN=psbC PE=...	[more]

BLAST of PI0017086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG40	5.9e-73	100.00	Photosystem II CP43 reaction center protein OS=Cucumis sativus var. hardwickii O...	[more]
A0A6B9TV55	5.9e-73	100.00	Photosystem II CP43 reaction center protein OS=Gonostegia hirta OX=648870 GN=psb...	[more]
A0A6M3RWB3	5.9e-73	100.00	Photosystem II CP43 reaction center protein OS=Trichosanthes kirilowii OX=3677 G...	[more]
A0A7G3STX1	5.9e-73	100.00	Photosystem II CP43 reaction center protein OS=Solanum stenotomum subsp. gonioca...	[more]
A0A482BG40	5.9e-73	100.00	Photosystem II CP43 reaction center protein OS=Solanum stenotomum subsp. gonioca...	[more]

BLAST of PI0017086 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009751902.1	1.2e-72	100.00	photosystem II 43 kDa protein [Cyclanthera pedata] >QIT04720.1 photosystem II 43...	[more]
YP_009776819.1	1.2e-72	100.00	photosystem II CP43 chlorophyll apoprotein [Phyllanthus emblica] >AFU94719.1 Psb...	[more]
YP_009501732.1	1.2e-72	100.00	photosystem II CP43 chlorophyll apoprotein [Passiflora serratifolia] >AXB38378.1...	[more]
QVX28138.1	1.2e-72	100.00	photosystem II CP43 chlorophyll apoprotein [Passiflora mucronata]	[more]
YP_009390301.1	1.2e-72	100.00	photosystem II CP43 chlorophyll apoprotein [Abelmoschus esculentus] >YP_01001016...	[more]

BLAST of PI0017086 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00280.1	2.2e-75	98.48	photosystem II reaction center protein C	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044900	Photosystem II CP43 reaction centre protein superfamily	GENE3D	1.10.10.670	photosystem ii from thermosynechococcus elongatus	coord: 1..58 e-value: 6.5E-33 score: 114.3
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 1..127 e-value: 1.8E-36 score: 125.9
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..132
None	No IPR available	PANTHER	PTHR33180:SF21	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 1..132
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 1..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0017086.1	PI0017086.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0010242	oxygen evolving activity