Homology
BLAST of PI0017263 vs. ExPASy Swiss-Prot
Match:
Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2577.0 bits (6678), Expect = 0.0e+00
Identity = 1301/1356 (95.94%), Postives = 1309/1356 (96.53%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 244
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 364
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 365 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 425 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
SCGCS+VPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNE+GIPDY
Sbjct: 485 SCGCSLVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNENGIPDY 544
Query: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 545 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 604
Query: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID--------------- 660
INGIFRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLI+
Sbjct: 605 INGIFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 664
Query: 661 --GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
FFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 665 KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 724
Query: 721 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 725 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 784
Query: 781 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
IIYELADGINLVKLFPQDLLQERDNLELRV NYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 785 IIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLN 844
Query: 841 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAYIRKRKDPSGSGLIFNNESD
Sbjct: 845 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNNESD 904
Query: 901 RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
RTNINPFFSI SKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQ+DLFNDVKDY
Sbjct: 905 RTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFNDVKDY 964
Query: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFY LITHNPISLTKYLQL NLKQ FQV
Sbjct: 965 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYYLITHNPISLTKYLQLDNLKQIFQV 1024
Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY------------FFFENVC 1080
LKYYLMDENGGI NSDPC NIVFNTFNLNWHFLH NYHNNY FFFENVC
Sbjct: 1025 LKYYLMDENGGILNSDPCINIVFNTFNLNWHFLHDNYHNNYCEETPTRISLGQFFFENVC 1084
Query: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
IAKNRPHLKSGQIIIVQVDS+VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR
Sbjct: 1085 IAKNRPHLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1144
Query: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR
Sbjct: 1145 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1204
Query: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 1205 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1264
Query: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL
Sbjct: 1265 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1324
Query: 1321 GGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1328
GGMIPVGTGFRELAHRSRQ+NNIPLETP KK G+
Sbjct: 1325 GGMIPVGTGFRELAHRSRQHNNIPLETPPKKIFEGE 1360
BLAST of PI0017263 vs. ExPASy Swiss-Prot
Match:
B1NWE0 (DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2224.9 bits (5764), Expect = 0.0e+00
Identity = 1128/1353 (83.37%), Postives = 1206/1353 (89.14%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAERA+LVFHNK IDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 5 MAERANLVFHNKAIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKH+HYGNVHAVEKLRQSIEIWYATSEYLRQEMN NFR
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHYHYGNVHAVEKLRQSIEIWYATSEYLRQEMNLNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MT+PFNPVHIMSFSGARGN SQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTEPFNPVHIMSFSGARGNTSQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGI VSP N M+PERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTARGISVSPRNGMMPERIF 244
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQT IGRVLAD+IYMG RCI +RNQDIGIGL NRFITF+TQ ISIRTPFTCRSTSWICRL
Sbjct: 245 IQTFIGRVLADNIYMGLRCIAIRNQDIGIGLANRFITFRTQTISIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 364
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFNEDLVHP RTRHGHPAFLCYIDLYVTI+S+DIIHNVTIPPKS LLVQNDQYVESEQVI
Sbjct: 365 KFNEDLVHPIRTRHGHPAFLCYIDLYVTIKSQDIIHNVTIPPKSFLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAG YTLN KE+VRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSG
Sbjct: 425 AEIRAGAYTLNFKEKVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGS 484
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
SC S+VPFSL+KDQDQ+NVHSL V+RRYISS SVNND+V KF+ SGK ESGIPDY
Sbjct: 485 SCRSSIVPFSLHKDQDQMNVHSLSVKRRYISSPSVNNDQVKHKFFSSDFSGKKESGIPDY 544
Query: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
SELN +CTG NL Y I + NSDLLAKRRRN FII F+S+QEREKE S ISIEIP
Sbjct: 545 SELNRSICTGHCNLIYSTILYKNSDLLAKRRRNKFIIPFQSIQEREKELMTQSAISIEIP 604
Query: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID--------------- 660
INGIFRRNS+ AYFDDPQYR+ SSGITKYG IGVHSI+KKEDLI+
Sbjct: 605 INGIFRRNSVFAYFDDPQYRKKSSGITKYGAIGVHSIVKKEDLIEYRGVKEFKPKYQTKV 664
Query: 661 GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFS 720
FFIPEEV+ILPESSS+MVRNNSIIGV T++ L+ RSRVGGLVRVE+KKK++ELKIFS
Sbjct: 665 DRFFFIPEEVYILPESSSLMVRNNSIIGVDTQIALNTRSRVGGLVRVERKKKKMELKIFS 724
Query: 721 GDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVII 780
GDIHFPGE DKISRH+ ILIPP VK NSK+SKK KNWIY+Q ITPTKKKYFV VRPVII
Sbjct: 725 GDIHFPGETDKISRHSDILIPPGTVKTNSKESKKVKNWIYIQRITPTKKKYFVLVRPVII 784
Query: 781 YELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWD 840
YE+A+GINL LFPQDLLQE+DNL+LRVVNYILYG GKPIRGIS TSIQLVRTCL+LNWD
Sbjct: 785 YEIANGINLETLFPQDLLQEKDNLKLRVVNYILYGTGKPIRGISDTSIQLVRTCLVLNWD 844
Query: 841 RDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYI-RKRKDPSGSGLIFNNESDR 900
+DKKSSSIE+ARA+FVE+STNGL+R+FLRI+LVK +YI RKR DPSGS I NN SDR
Sbjct: 845 QDKKSSSIEEARAAFVEISTNGLIRDFLRINLVKFHISYIGRKRNDPSGSEPISNNGSDR 904
Query: 901 TNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDYN 960
TNINPF+ I SKTRV QS QNQGTI TLLN NKE QSLIILS+SNC QMD FNDVK +N
Sbjct: 905 TNINPFYPIYSKTRVQQSLKQNQGTISTLLNINKECQSLIILSSSNCFQMDPFNDVKHHN 964
Query: 961 VIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFY--DLITHNPISLTKYLQLANLKQTFQ 1020
VIKES K+DP+I IRNSLGPLG A QI NFY FY +LITHN IS+TKY +L NLKQTFQ
Sbjct: 965 VIKESIKRDPIIPIRNSLGPLGTALQIANFYLFYHLNLITHNQISVTKYSKLYNLKQTFQ 1024
Query: 1021 VLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY--------FFFENVCIAK 1080
VLKYYLMDENG I N DPCSN V N FNLNW+FLHHNY ++ F EN+C+AK
Sbjct: 1025 VLKYYLMDENGRIVNPDPCSNSVLNPFNLNWYFLHHNYCESFFTIISLGQFICENLCMAK 1084
Query: 1081 NRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGD 1140
N PHLKSGQ+IIV +DSVVIRSAKPYLAT GATVH HYGEILYEG+TLVTFIYEKSRSGD
Sbjct: 1085 NGPHLKSGQVIIVHIDSVVIRSAKPYLATPGATVHGHYGEILYEGNTLVTFIYEKSRSGD 1144
Query: 1141 ITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISL 1200
ITQGLPKVEQVLEVRSIDSIS++LEKR+EGWNE ITRILGIPWGFLIG ELTIVQSRISL
Sbjct: 1145 ITQGLPKVEQVLEVRSIDSISINLEKRVEGWNECITRILGIPWGFLIGTELTIVQSRISL 1204
Query: 1201 VNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAL 1260
VNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAL
Sbjct: 1205 VNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRAL 1264
Query: 1261 EEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGM 1320
EEAICY A+LLGIT+ASLNTQSFISEASFQET RVLAKAALRGRIDWL+GLKENVVLGGM
Sbjct: 1265 EEAICYGAILLGITRASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVVLGGM 1324
Query: 1321 IPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1328
IPVGTGF+ L SRQ+ NIPL+T +K G+
Sbjct: 1325 IPVGTGFKGLVQGSRQHKNIPLKTKKKNLFEGE 1357
BLAST of PI0017263 vs. ExPASy Swiss-Prot
Match:
Q49L08 (DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2220.7 bits (5753), Expect = 0.0e+00
Identity = 1124/1357 (82.83%), Postives = 1203/1357 (88.65%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAER +LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 5 MAERVNLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFR
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRG+ VSP N M+PERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGVSVSPRNGMMPERIF 244
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQTLIGRVLADDIYMGPRCI +RNQDIGIGL+NRFITF+TQPISIRTPFTCRSTSWICRL
Sbjct: 245 IQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRTQPISIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 364
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFN+DLVHPTRTRHGHPAFLC IDLYVTIESEDI+HNVTIPPKS LLVQN+QYVESEQVI
Sbjct: 365 KFNDDLVHPTRTRHGHPAFLCSIDLYVTIESEDILHNVTIPPKSFLLVQNNQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAGTYT NLKERVRKHIYS+SEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 425 AEIRAGTYTFNLKERVRKHIYSESEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGK-NESGIPD 540
SC S VPFSLYKDQDQ+N+ S ERRYISSLSVNND++ + SGK E IPD
Sbjct: 485 SCRSSRVPFSLYKDQDQMNLRSTERERRYISSLSVNNDQMRYELCSSDFSGKIKEDRIPD 544
Query: 541 YSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEI 600
YSELN I+ NL YP F NSDLLAKRRRN F+I +S+QER+KE P SGISIE+
Sbjct: 545 YSELNRIISIVHCNLKYPTTFDENSDLLAKRRRNRFLIPLQSIQERKKELMPHSGISIEL 604
Query: 601 PINGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID-------------- 660
PINGI RRNSILAYFDDP+YRR SSGI KYGT+GVHS++KKEDLI+
Sbjct: 605 PINGILRRNSILAYFDDPRYRRKSSGIIKYGTLGVHSVVKKEDLIEYRGIKEFKQKCQMK 664
Query: 661 -GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIF 720
FFIPEEVHI PESSSIMVRNNS+IGV TR+ L+ RSRVGGLVRVE+KKKRIELKIF
Sbjct: 665 LDPFFFIPEEVHIFPESSSIMVRNNSLIGVDTRIALNTRSRVGGLVRVERKKKRIELKIF 724
Query: 721 SGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVI 780
SGDIHFPGE DKISRH+GILIPP K N K+SKK KNWIYVQ ITPTKKKYFV VRPV+
Sbjct: 725 SGDIHFPGETDKISRHSGILIPPGTGKTNFKESKKWKNWIYVQRITPTKKKYFVLVRPVV 784
Query: 781 IYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNW 840
YE+ DGINL LFP DLLQERDN++LRVVNYI+Y NGKPIRGIS TSIQLVRTCL+LNW
Sbjct: 785 TYEVLDGINLATLFPPDLLQERDNMQLRVVNYIVYRNGKPIRGISDTSIQLVRTCLILNW 844
Query: 841 DRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLI--FNNES 900
D+DKKSSSIE+A SFVEVSTNGL+R+FLRIDLVK +Y+RKR DPSGSGLI +N S
Sbjct: 845 DQDKKSSSIEEAHTSFVEVSTNGLIRDFLRIDLVKFPISYLRKRNDPSGSGLISDSDNVS 904
Query: 901 DRTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKD 960
D TN NPF+ SKT++ Q SQNQGTIRTLLN+NKE SLIILS+SNC +M FN K
Sbjct: 905 DHTNSNPFY---SKTKIQQLLSQNQGTIRTLLNKNKECPSLIILSSSNCFRMGPFNAGKY 964
Query: 961 YNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQ 1020
+NVIKES KKDP+I IRNS+GPLG Q VNFYSFY LITHNPI +TKYLQL NLKQTFQ
Sbjct: 965 HNVIKESIKKDPIIKIRNSIGPLGTVLQFVNFYSFYYLITHNPILVTKYLQLENLKQTFQ 1024
Query: 1021 VLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY------------FFFENV 1080
V+ YYLMDENG I N D CSNIV N+FNLNW+FLHHNY++NY F ENV
Sbjct: 1025 VINYYLMDENGRILNPDSCSNIVLNSFNLNWYFLHHNYYHNYFEERSTIISLGQFICENV 1084
Query: 1081 CIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKS 1140
CI+KN PHLKSGQ++IVQVDSVVIRSAKPYLAT GATVH HYGEILYEGDTLVTFIYEKS
Sbjct: 1085 CISKNGPHLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKS 1144
Query: 1141 RSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQS 1200
RSGDITQGLPKVEQVLEVRSIDSISM+LEKRIEGWNE I +ILGIPWGFLIGAELTIVQS
Sbjct: 1145 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNEHIKKILGIPWGFLIGAELTIVQS 1204
Query: 1201 RISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERT 1260
RISLVNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVF PGELIGLLRA RT
Sbjct: 1205 RISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAART 1264
Query: 1261 GRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVV 1320
GRALEE+ICYRA+LLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+GLKENVV
Sbjct: 1265 GRALEESICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1324
Query: 1321 LGGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1328
+GGMIPVGTGF+ L HRSRQ+ NIPL+T +K F G+
Sbjct: 1325 IGGMIPVGTGFKGLVHRSRQHKNIPLKTKKKNFFEGE 1358
BLAST of PI0017263 vs. ExPASy Swiss-Prot
Match:
Q0ZJ30 (DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2216.0 bits (5741), Expect = 0.0e+00
Identity = 1128/1349 (83.62%), Postives = 1190/1349 (88.21%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
M ERA+LVFHNKVIDGTA+KRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 5 MTERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN NFR
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNTNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSP N MIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNGMIPERIF 244
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQTLIGRVLADDIYMGPRCI +RNQDIGIGL+NRFITFQ Q ISIRTPFTC+STSWICRL
Sbjct: 245 IQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFQAQTISIRTPFTCKSTSWICRL 304
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAPSNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKI 364
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFNED VHPTRTRHGHPAFLCYIDLYVTIESE IIHNV IPPKS LLVQNDQYVESEQVI
Sbjct: 365 KFNEDWVHPTRTRHGHPAFLCYIDLYVTIESEGIIHNVNIPPKSFLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAGTYT N KERVRKHIYSDSEGEMHWSTDVYHAPEFTY NVHLLPKTSHLWILSGG
Sbjct: 425 AEIRAGTYTFNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVHLLPKTSHLWILSGG 484
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
SC S+VPFS++KDQDQ++V SL VERRYIS+ SV ND+V +F+ LSGK E IP Y
Sbjct: 485 SCRFSIVPFSIHKDQDQMSVRSLSVERRYISNPSVTNDQVIHEFFSSDLSGKKEGRIPAY 544
Query: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
SELN I+ TG+ NL PAI H NSDLLAKRRRN FII F+S+QE EKE PPSGISIEIP
Sbjct: 545 SELNRIIYTGRYNLIDPAILHENSDLLAKRRRNRFIIPFQSIQEGEKELMPPSGISIEIP 604
Query: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID--------------- 660
INGIFRRNSILAYFDDP+YRRNSSGITKYGTI HSI+KKEDLI+
Sbjct: 605 INGIFRRNSILAYFDDPRYRRNSSGITKYGTIEAHSIVKKEDLIEYRGVKEFKPKYQMKV 664
Query: 661 GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFS 720
FFIPEEVHILP S+SIMVRNNSIIGV TR+TL+ RSRV GLVRVE+KKKRIELKIFS
Sbjct: 665 DRFFFIPEEVHILPGSASIMVRNNSIIGVDTRITLNTRSRVSGLVRVERKKKRIELKIFS 724
Query: 721 GDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVII 780
GDI FPGE +KISRH GILIPP KKNSK+SKK KNWIYVQ ITPTKKKYFV VRPV+
Sbjct: 725 GDIQFPGETNKISRHIGILIPPGTRKKNSKESKKLKNWIYVQGITPTKKKYFVLVRPVVT 784
Query: 781 YELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWD 840
YE+ADGINL LFPQDLLQERDN+ L+VVNYILYGNGKPIRGIS TSIQLVRTCL+LNW
Sbjct: 785 YEIADGINLATLFPQDLLQERDNMHLQVVNYILYGNGKPIRGISDTSIQLVRTCLVLNWY 844
Query: 841 RDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESDRT 900
++KKSS IE ASF+EV TNGL+R+FL I+LVKS +Y KR DPS SGLI +N SD T
Sbjct: 845 QEKKSSPIEKTHASFMEVRTNGLIRDFLTINLVKSYISYTGKRNDPSSSGLIADNGSDHT 904
Query: 901 NINPFFSISSKTRVP----QSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVK 960
NINPF+SI K R+ Q +NQGTIRTLLNRNKE QSLIILS+SNC +M FNDVK
Sbjct: 905 NINPFYSIYPKERIQQLLRQRQKKNQGTIRTLLNRNKECQSLIILSSSNCSRMGPFNDVK 964
Query: 961 DYNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTF 1020
+NVIKES KKD I IRNSLGPLG A QI NFYSFY LITHN I +TKY QL N KQTF
Sbjct: 965 YHNVIKESIKKDTPIPIRNSLGPLGTALQITNFYSFYHLITHNHILVTKYFQLDNFKQTF 1024
Query: 1021 QVLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHN--------NYFFFENVCIA 1080
Q LKYYLMDENG +N DPCSNI+ N FNLNW+FLHHNY F ENVCIA
Sbjct: 1025 QTLKYYLMDENGITYNPDPCSNIILNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIA 1084
Query: 1081 KNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSG 1140
KN PHLKSGQ++IVQVDSVVIRSAKPYLAT GATVH HYGEILYEGDTLVTFIYEKSRSG
Sbjct: 1085 KNGPHLKSGQVLIVQVDSVVIRSAKPYLATLGATVHGHYGEILYEGDTLVTFIYEKSRSG 1144
Query: 1141 DITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRIS 1200
DITQGLPKVEQVLEVRSIDSISM+LEKR+EGWNE ITRILGIPWGF IGAELTI QSRIS
Sbjct: 1145 DITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNEHITRILGIPWGFFIGAELTIAQSRIS 1204
Query: 1201 LVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRA 1260
LVNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRA
Sbjct: 1205 LVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRA 1264
Query: 1261 LEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGG 1320
EEAICYR +LLGIT+ASLNTQSFISEASFQETARVLAKAAL GRIDWL+GLKENVVLGG
Sbjct: 1265 FEEAICYRTILLGITRASLNTQSFISEASFQETARVLAKAALWGRIDWLKGLKENVVLGG 1324
Query: 1321 MIPVGTGFRELAHRSRQYNNIPLETPQKK 1323
MIPVGTGF+ L HRSRQ+NNIPLE KK
Sbjct: 1325 MIPVGTGFKGLVHRSRQHNNIPLEMETKK 1353
BLAST of PI0017263 vs. ExPASy Swiss-Prot
Match:
B1A925 (DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2208.7 bits (5722), Expect = 0.0e+00
Identity = 1119/1350 (82.89%), Postives = 1203/1350 (89.11%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAERA+LVFHNKVIDGTAIKRLISRLID FGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1 MAERANLVFHNKVIDGTAIKRLISRLIDRFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
+TDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 VTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSP NR +PERIF
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPKNRTMPERIF 240
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQTLIGRVLADDIYMGPRCI +RNQDIGIGL+NRFITF+TQ ISIRTPFTCRSTSWICRL
Sbjct: 241 IQTLIGRVLADDIYMGPRCIAIRNQDIGIGLVNRFITFRTQSISIRTPFTCRSTSWICRL 300
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+R+PSNGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRSPSNGKI 360
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFNEDLVHPTRTRHGHPAFLCYIDL V IESEDIIHNVTIPPKS LLVQNDQYVESEQVI
Sbjct: 361 KFNEDLVHPTRTRHGHPAFLCYIDLSVVIESEDIIHNVTIPPKSFLLVQNDQYVESEQVI 420
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAGTYTLN KERVRKHIYS+SEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421 AEIRAGTYTLNYKERVRKHIYSNSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
S S+VPFSL+KDQDQ+N+HSL VE+ ISSL+VNND+ KF+ + S K + GIPDY
Sbjct: 481 SSRSSLVPFSLHKDQDQMNIHSLSVEQESISSLAVNNDQGRHKFFSSNFSDKKKCGIPDY 540
Query: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
SE + IL TG NL Y A H NSDLLAKRRRN FII F+S+QE+EKE P SGISIEIP
Sbjct: 541 SEFHRILDTGHCNLIYFASLHENSDLLAKRRRNRFIIPFQSIQEQEKELMPRSGISIEIP 600
Query: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID--------------- 660
INGIFRRNSILA+FDDP+YRR SSGI KYGTIG HSI+KKED+I+
Sbjct: 601 INGIFRRNSILAFFDDPRYRRKSSGILKYGTIGAHSIVKKEDVIEYRGVKKFKTKYQMKV 660
Query: 661 GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKIFS 720
FFIPEEVHILPESSSIMVRNNSIIGV TR+TL+IRS+VGGLVRVE+KKK IEL+IFS
Sbjct: 661 DRFFFIPEEVHILPESSSIMVRNNSIIGVDTRITLNIRSQVGGLVRVERKKKSIELQIFS 720
Query: 721 GDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPVII 780
GDIHFPG+ DKISRH+GILIPP R K NSK+SKK KNWIYVQ ITPTKKKYFV VRPV
Sbjct: 721 GDIHFPGKTDKISRHSGILIPPGRGKTNSKESKKLKNWIYVQRITPTKKKYFVLVRPVAT 780
Query: 781 YELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLNWD 840
YE+ADGINL LFPQDL +E+DN++LRVVNYILYGNGKP+RGI TSIQLVRTCL+LNWD
Sbjct: 781 YEIADGINLATLFPQDLFREKDNMQLRVVNYILYGNGKPVRGIFDTSIQLVRTCLVLNWD 840
Query: 841 RDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDT--AYIRKRKDPSGSGLIFNNESD 900
+D KSSS+E+ R FVEVSTN L+R+FLRIDLVKS + +YIRKR DPSGSGLI +N SD
Sbjct: 841 QDNKSSSVEEVRTFFVEVSTNSLIRDFLRIDLVKSQSHISYIRKRNDPSGSGLISDNGSD 900
Query: 901 RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
R INPF+ K R+ QS S+N GTIRTLLNRNKE QSLIILS+SNC QM FN VK +
Sbjct: 901 R--INPFY---YKERIQQSLSKNHGTIRTLLNRNKECQSLIILSSSNCFQMGPFNHVKYH 960
Query: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
NVIK+S KKDPLI IRNSLGP+G A QI NFYS Y LITHN IS+TKY QL NL Q F+V
Sbjct: 961 NVIKQSIKKDPLIPIRNSLGPVGTAIQIANFYSIYHLITHNQISVTKYFQLDNLNQIFEV 1020
Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY------------FFFENVC 1080
+KYYLMDE G ++N DPCSNI+ N FNLNW+FL+ NYH+NY F ENVC
Sbjct: 1021 IKYYLMDETGRVYNPDPCSNIILNPFNLNWYFLYQNYHHNYCEETSTIISLGQFICENVC 1080
Query: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
+AKN PHLKSGQ++IVQVDSVVIRSAKPYLAT GATVH HYGEILYEGDTLVTFIYEKSR
Sbjct: 1081 LAKNGPHLKSGQVLIVQVDSVVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSR 1140
Query: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
SGDITQGLPKVEQVLEVRSIDSIS++LEKR+EGWN+RITRILGIPWGFLIGAELTIVQSR
Sbjct: 1141 SGDITQGLPKVEQVLEVRSIDSISLNLEKRVEGWNKRITRILGIPWGFLIGAELTIVQSR 1200
Query: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
ISLVNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSE+GMSNVF PGELIGLLRAERTG
Sbjct: 1201 ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTG 1260
Query: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
RALEEAICYRA+LLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+GLKENVVL
Sbjct: 1261 RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1320
Query: 1321 GGMIPVGTGFRELAHRSRQYNNIPLETPQK 1322
GGMIP GTGF+ L H SRQ+ +I LET +K
Sbjct: 1321 GGMIPAGTGFKGLVHCSRQHTSILLETKKK 1345
BLAST of PI0017263 vs. ExPASy TrEMBL
Match:
A0A249RXP5 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. agrestis OX=217619 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2582.4 bits (6692), Expect = 0.0e+00
Identity = 1302/1358 (95.88%), Postives = 1312/1358 (96.61%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 244
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA SNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKI 364
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFNE+LVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 365 KFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 425 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNESGIPDY
Sbjct: 485 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDY 544
Query: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 545 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 604
Query: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID--------------- 660
ING+FRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLI+
Sbjct: 605 INGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 664
Query: 661 --GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
FFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 665 KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 724
Query: 721 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 725 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 784
Query: 781 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 785 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 844
Query: 841 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAY+RKRKDPSGSGLIFNNESD
Sbjct: 845 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESD 904
Query: 901 RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
RTNINPFFSI SKTRVPQSPSQNQGTIRTL NRNKERQSLIILSASNCLQMDLFNDVKDY
Sbjct: 905 RTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDY 964
Query: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQL NLKQTFQV
Sbjct: 965 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV 1024
Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY--------------FFFEN 1080
LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY FFFEN
Sbjct: 1025 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFEN 1084
Query: 1081 VCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEK 1140
VCIAKNRPHLKSGQIIIV+VDSVVIRSAKPYLATSGATVHRHYGE+LYEGDTLVTFIYEK
Sbjct: 1085 VCIAKNRPHLKSGQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEK 1144
Query: 1141 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ 1200
SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG+ELTIVQ
Sbjct: 1145 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQ 1204
Query: 1201 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1260
SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER
Sbjct: 1205 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1264
Query: 1261 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1320
TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV
Sbjct: 1265 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1324
Query: 1321 VLGGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1328
VLGGMIPVGTGFRELAHRSRQ+NNIPLE P KK G+
Sbjct: 1325 VLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1362
BLAST of PI0017263 vs. ExPASy TrEMBL
Match:
A0A249RYY9 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. dudaim OX=2034236 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2582.4 bits (6692), Expect = 0.0e+00
Identity = 1302/1358 (95.88%), Postives = 1312/1358 (96.61%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 244
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA SNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKI 364
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFNE+LVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 365 KFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 425 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNESGIPDY
Sbjct: 485 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDY 544
Query: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 545 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 604
Query: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID--------------- 660
ING+FRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLI+
Sbjct: 605 INGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 664
Query: 661 --GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
FFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 665 KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 724
Query: 721 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 725 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 784
Query: 781 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 785 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 844
Query: 841 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAY+RKRKDPSGSGLIFNNESD
Sbjct: 845 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESD 904
Query: 901 RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
RTNINPFFSI SKTRVPQSPSQNQGTIRTL NRNKERQSLIILSASNCLQMDLFNDVKDY
Sbjct: 905 RTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDY 964
Query: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQL NLKQTFQV
Sbjct: 965 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV 1024
Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY--------------FFFEN 1080
LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY FFFEN
Sbjct: 1025 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFEN 1084
Query: 1081 VCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEK 1140
VCIAKNRPHLKSGQIIIV+VDSVVIRSAKPYLATSGATVHRHYGE+LYEGDTLVTFIYEK
Sbjct: 1085 VCIAKNRPHLKSGQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEK 1144
Query: 1141 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ 1200
SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG+ELTIVQ
Sbjct: 1145 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQ 1204
Query: 1201 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1260
SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER
Sbjct: 1205 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1264
Query: 1261 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1320
TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV
Sbjct: 1265 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1324
Query: 1321 VLGGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1328
VLGGMIPVGTGFRELAHRSRQ+NNIPLE P KK G+
Sbjct: 1325 VLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1362
BLAST of PI0017263 vs. ExPASy TrEMBL
Match:
A0A249RYA1 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. conomon OX=3657 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2582.4 bits (6692), Expect = 0.0e+00
Identity = 1302/1358 (95.88%), Postives = 1312/1358 (96.61%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 244
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA SNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKI 364
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFNE+LVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 365 KFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 425 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNESGIPDY
Sbjct: 485 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDY 544
Query: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 545 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 604
Query: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID--------------- 660
ING+FRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLI+
Sbjct: 605 INGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 664
Query: 661 --GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
FFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 665 KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 724
Query: 721 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 725 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 784
Query: 781 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 785 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 844
Query: 841 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAY+RKRKDPSGSGLIFNNESD
Sbjct: 845 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESD 904
Query: 901 RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
RTNINPFFSI SKTRVPQSPSQNQGTIRTL NRNKERQSLIILSASNCLQMDLFNDVKDY
Sbjct: 905 RTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDY 964
Query: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQL NLKQTFQV
Sbjct: 965 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV 1024
Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY--------------FFFEN 1080
LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY FFFEN
Sbjct: 1025 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFEN 1084
Query: 1081 VCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEK 1140
VCIAKNRPHLKSGQIIIV+VDSVVIRSAKPYLATSGATVHRHYGE+LYEGDTLVTFIYEK
Sbjct: 1085 VCIAKNRPHLKSGQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEK 1144
Query: 1141 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ 1200
SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG+ELTIVQ
Sbjct: 1145 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQ 1204
Query: 1201 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1260
SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER
Sbjct: 1205 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1264
Query: 1261 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1320
TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV
Sbjct: 1265 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1324
Query: 1321 VLGGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1328
VLGGMIPVGTGFRELAHRSRQ+NNIPLE P KK G+
Sbjct: 1325 VLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1362
BLAST of PI0017263 vs. ExPASy TrEMBL
Match:
A0A249RYE7 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. makuwa OX=1194695 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2582.4 bits (6692), Expect = 0.0e+00
Identity = 1302/1358 (95.88%), Postives = 1312/1358 (96.61%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 244
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA SNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKI 364
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFNE+LVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 365 KFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 425 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNESGIPDY
Sbjct: 485 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDY 544
Query: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 545 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 604
Query: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID--------------- 660
ING+FRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLI+
Sbjct: 605 INGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 664
Query: 661 --GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
FFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 665 KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 724
Query: 721 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 725 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 784
Query: 781 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 785 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 844
Query: 841 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAY+RKRKDPSGSGLIFNNESD
Sbjct: 845 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESD 904
Query: 901 RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
RTNINPFFSI SKTRVPQSPSQNQGTIRTL NRNKERQSLIILSASNCLQMDLFNDVKDY
Sbjct: 905 RTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDY 964
Query: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQL NLKQTFQV
Sbjct: 965 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV 1024
Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY--------------FFFEN 1080
LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY FFFEN
Sbjct: 1025 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFEN 1084
Query: 1081 VCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEK 1140
VCIAKNRPHLKSGQIIIV+VDSVVIRSAKPYLATSGATVHRHYGE+LYEGDTLVTFIYEK
Sbjct: 1085 VCIAKNRPHLKSGQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEK 1144
Query: 1141 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ 1200
SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG+ELTIVQ
Sbjct: 1145 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQ 1204
Query: 1201 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1260
SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER
Sbjct: 1205 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1264
Query: 1261 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1320
TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV
Sbjct: 1265 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1324
Query: 1321 VLGGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1328
VLGGMIPVGTGFRELAHRSRQ+NNIPLE P KK G+
Sbjct: 1325 VLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1362
BLAST of PI0017263 vs. ExPASy TrEMBL
Match:
G3ETX5 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. melo OX=412675 GN=rpoC2 PE=3 SV=1)
HSP 1 Score: 2582.4 bits (6692), Expect = 0.0e+00
Identity = 1302/1358 (95.88%), Postives = 1312/1358 (96.61%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 244
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA SNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKI 364
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFNE+LVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 365 KFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 425 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNESGIPDY
Sbjct: 485 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDY 544
Query: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 545 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 604
Query: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID--------------- 660
ING+FRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLI+
Sbjct: 605 INGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 664
Query: 661 --GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
FFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 665 KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 724
Query: 721 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 725 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 784
Query: 781 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 785 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 844
Query: 841 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAY+RKRKDPSGSGLIFNNESD
Sbjct: 845 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESD 904
Query: 901 RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
RTNINPFFSI SKTRVPQSPSQNQGTIRTL NRNKERQSLIILSASNCLQMDLFNDVKDY
Sbjct: 905 RTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDY 964
Query: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQL NLKQTFQV
Sbjct: 965 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV 1024
Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY--------------FFFEN 1080
LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY FFFEN
Sbjct: 1025 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFEN 1084
Query: 1081 VCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEK 1140
VCIAKNRPHLKSGQIIIV+VDSVVIRSAKPYLATSGATVHRHYGE+LYEGDTLVTFIYEK
Sbjct: 1085 VCIAKNRPHLKSGQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEK 1144
Query: 1141 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ 1200
SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG+ELTIVQ
Sbjct: 1145 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQ 1204
Query: 1201 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1260
SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER
Sbjct: 1205 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1264
Query: 1261 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1320
TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV
Sbjct: 1265 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1324
Query: 1321 VLGGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1328
VLGGMIPVGTGFRELAHRSRQ+NNIPLE P KK G+
Sbjct: 1325 VLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1362
BLAST of PI0017263 vs. NCBI nr
Match:
YP_004841773.1 (RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA polymerase beta'' subunit [Cucumis melo subsp. agrestis] >ASY96578.1 RNA polymerase beta'' subunit [Cucumis melo var. conomon] >ASY96665.1 RNA polymerase beta'' subunit [Cucumis melo var. makuwa] >ASY96839.1 RNA polymerase beta'' subunit [Cucumis melo var. dudaim] >ASY97100.1 RNA polymerase beta'' subunit [Cucumis melo var. inodorus] >AEM76882.1 RNA polymerase beta'' subunit [Cucumis melo subsp. melo])
HSP 1 Score: 2582.4 bits (6692), Expect = 0.0e+00
Identity = 1302/1358 (95.88%), Postives = 1312/1358 (96.61%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 244
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA SNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKI 364
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFNE+LVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 365 KFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 425 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNESGIPDY
Sbjct: 485 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDY 544
Query: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 545 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 604
Query: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID--------------- 660
ING+FRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLI+
Sbjct: 605 INGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 664
Query: 661 --GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
FFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 665 KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 724
Query: 721 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 725 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 784
Query: 781 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 785 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 844
Query: 841 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAY+RKRKDPSGSGLIFNNESD
Sbjct: 845 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESD 904
Query: 901 RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
RTNINPFFSI SKTRVPQSPSQNQGTIRTL NRNKERQSLIILSASNCLQMDLFNDVKDY
Sbjct: 905 RTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDY 964
Query: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQL NLKQTFQV
Sbjct: 965 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV 1024
Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY--------------FFFEN 1080
LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY FFFEN
Sbjct: 1025 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFEN 1084
Query: 1081 VCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEK 1140
VCIAKNRPHLKSGQIIIV+VDSVVIRSAKPYLATSGATVHRHYGE+LYEGDTLVTFIYEK
Sbjct: 1085 VCIAKNRPHLKSGQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEK 1144
Query: 1141 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ 1200
SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG+ELTIVQ
Sbjct: 1145 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQ 1204
Query: 1201 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1260
SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER
Sbjct: 1205 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1264
Query: 1261 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1320
TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV
Sbjct: 1265 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1324
Query: 1321 VLGGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1328
VLGGMIPVGTGFRELAHRSRQ+NNIPLE P KK G+
Sbjct: 1325 VLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1362
BLAST of PI0017263 vs. NCBI nr
Match:
QJF46373.1 (RNA polymerase beta'' subunit [Cucumis melo] >QRW36545.1 RNA polymerase beta'' subunit [Cucumis melo])
HSP 1 Score: 2582.4 bits (6692), Expect = 0.0e+00
Identity = 1302/1358 (95.88%), Postives = 1312/1358 (96.61%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA SNGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKI 360
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFNE+LVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 361 KFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNESGIPDY
Sbjct: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDY 540
Query: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 600
Query: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID--------------- 660
ING+FRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLI+
Sbjct: 601 INGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
Query: 661 --GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
FFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 661 KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
Query: 721 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 721 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
Query: 781 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 781 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
Query: 841 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAY+RKRKDPSGSGLIFNNESD
Sbjct: 841 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESD 900
Query: 901 RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
RTNINPFFSI SKTRVPQSPSQNQGTIRTL NRNKERQSLIILSASNCLQMDLFNDVKDY
Sbjct: 901 RTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDY 960
Query: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQL NLKQTFQV
Sbjct: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV 1020
Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY--------------FFFEN 1080
LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY FFFEN
Sbjct: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFEN 1080
Query: 1081 VCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEK 1140
VCIAKNRPHLKSGQIIIV+VDSVVIRSAKPYLATSGATVHRHYGE+LYEGDTLVTFIYEK
Sbjct: 1081 VCIAKNRPHLKSGQIIIVEVDSVVIRSAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEK 1140
Query: 1141 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ 1200
SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG+ELTIVQ
Sbjct: 1141 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQ 1200
Query: 1201 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1260
SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER
Sbjct: 1201 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1260
Query: 1261 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1320
TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV
Sbjct: 1261 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1320
Query: 1321 VLGGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1328
VLGGMIPVGTGFRELAHRSRQ+NNIPLE P KK G+
Sbjct: 1321 VLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1358
BLAST of PI0017263 vs. NCBI nr
Match:
QHB75953.1 (RNA polymerase beta II subunit [Cucumis melo subsp. melo])
HSP 1 Score: 2580.8 bits (6688), Expect = 0.0e+00
Identity = 1305/1356 (96.24%), Postives = 1309/1356 (96.53%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGK+ESGIPDY
Sbjct: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKHESGIPDY 540
Query: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
SELNPI CTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQER RPPSGISIEIP
Sbjct: 541 SELNPIPCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQER---VRPPSGISIEIP 600
Query: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID--------------- 660
INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLI+
Sbjct: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDLKPKYQMQM 660
Query: 661 --GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
FFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 661 KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
Query: 721 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 721 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
Query: 781 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 781 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
Query: 841 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
WDRDKK SSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD
Sbjct: 841 WDRDKKRSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
Query: 901 RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
RTNINPFFSI SKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY
Sbjct: 901 RTNINPFFSIYSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
Query: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQL NLKQTFQV
Sbjct: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV 1020
Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY------------FFFENVC 1080
LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY FFFENVC
Sbjct: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEERPTRISLGQFFFENVC 1080
Query: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR
Sbjct: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
Query: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNE ITRILGIPWGFLIGAEL IVQSR
Sbjct: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNEHITRILGIPWGFLIGAELMIVQSR 1200
Query: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
Query: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL
Sbjct: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
Query: 1321 GGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1328
GGMIPVGTGFRELAHRSRQ+NNIPLE P KK G+
Sbjct: 1321 GGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1353
BLAST of PI0017263 vs. NCBI nr
Match:
ASY96752.1 (RNA polymerase beta'' subunit [Cucumis melo var. momordica] >ASY96926.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo] >ASY97274.1 RNA polymerase beta'' subunit [Cucumis melo var. flexuosus] >ASY97013.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo] >ASY97187.1 RNA polymerase beta'' subunit [Cucumis melo var. cantalupo])
HSP 1 Score: 2580.1 bits (6686), Expect = 0.0e+00
Identity = 1301/1358 (95.80%), Postives = 1311/1358 (96.54%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 5 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 64
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 65 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 124
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 125 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 184
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 185 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 244
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 245 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 304
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRA SNGKI
Sbjct: 305 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRASSNGKI 364
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFNE+LVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 365 KFNENLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 424
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 425 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 484
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKNESGIPDY
Sbjct: 485 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNESGIPDY 544
Query: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 545 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 604
Query: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID--------------- 660
ING+FRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLI+
Sbjct: 605 INGLFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 664
Query: 661 --GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
FFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 665 KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 724
Query: 721 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 725 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 784
Query: 781 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 785 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 844
Query: 841 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAY+RKRKDPSGSGLIFNNESD
Sbjct: 845 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRKDPSGSGLIFNNESD 904
Query: 901 RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
RTNINPFFSI SKTRVPQSPSQNQGTIRTL NRNKERQSLIILSASNCLQMDLFNDVKDY
Sbjct: 905 RTNINPFFSIYSKTRVPQSPSQNQGTIRTLFNRNKERQSLIILSASNCLQMDLFNDVKDY 964
Query: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQL NLKQTFQV
Sbjct: 965 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLDNLKQTFQV 1024
Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY--------------FFFEN 1080
LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY FFFEN
Sbjct: 1025 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNYCEETPTRTRISLGHFFFEN 1084
Query: 1081 VCIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEK 1140
VCIAKNRPHLKSGQIIIV+VDSVVIR AKPYLATSGATVHRHYGE+LYEGDTLVTFIYEK
Sbjct: 1085 VCIAKNRPHLKSGQIIIVEVDSVVIRLAKPYLATSGATVHRHYGEMLYEGDTLVTFIYEK 1144
Query: 1141 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQ 1200
SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIG+ELTIVQ
Sbjct: 1145 SRSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGSELTIVQ 1204
Query: 1201 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1260
SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER
Sbjct: 1205 SRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAER 1264
Query: 1261 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1320
TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV
Sbjct: 1265 TGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENV 1324
Query: 1321 VLGGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1328
VLGGMIPVGTGFRELAHRSRQ+NNIPLE P KK G+
Sbjct: 1325 VLGGMIPVGTGFRELAHRSRQHNNIPLEPPPKKIFEGE 1362
BLAST of PI0017263 vs. NCBI nr
Match:
YP_009346475.1 (RNA polymerase beta' subunit [Cucumis x hytivus] >AOW71085.1 RNA polymerase beta' subunit [Cucumis x hytivus] >QCY72832.1 RpoC2 [Cucumis hystrix])
HSP 1 Score: 2577.7 bits (6680), Expect = 0.0e+00
Identity = 1301/1356 (95.94%), Postives = 1310/1356 (96.61%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID
Sbjct: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSPGNRMIPERIF 240
Query: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL
Sbjct: 241 IQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWICRL 300
Query: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI
Sbjct: 301 CYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNGKI 360
Query: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI
Sbjct: 361 KFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQVI 420
Query: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG
Sbjct: 421 AEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILSGG 480
Query: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIPDY 540
SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGP LSGKN+SGIPDY
Sbjct: 481 SCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPDLSGKNKSGIPDY 540
Query: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIEIP 600
SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKE RPPSGISIEIP
Sbjct: 541 SELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISIEIP 600
Query: 601 INGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID--------------- 660
INGIFRRNSILA+FDDPQYRRNSSGITKYGTIGVHSILKKEDLI+
Sbjct: 601 INGIFRRNSILAFFDDPQYRRNSSGITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQM 660
Query: 661 --GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
FFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI
Sbjct: 661 KVDRFFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
Query: 721 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
FSGDIHFPG+MDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV
Sbjct: 721 FSGDIHFPGDMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
Query: 781 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
IIYELADGINLVKLFPQDLLQERDNLELRV NYILYGNGKPIRGISGTSIQLVRTCLLLN
Sbjct: 781 IIYELADGINLVKLFPQDLLQERDNLELRVANYILYGNGKPIRGISGTSIQLVRTCLLLN 840
Query: 841 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDL KSDTAYIRKRKDPSGSGLIFNNESD
Sbjct: 841 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYIRKRKDPSGSGLIFNNESD 900
Query: 901 RTNINPFFSISSKTRVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKDY 960
RTNINPFFSI SKT+VPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQ+DLFNDVKDY
Sbjct: 901 RTNINPFFSIYSKTKVPQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQIDLFNDVKDY 960
Query: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQV 1020
NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFY LITHNPISLTKYLQL NLKQ FQV
Sbjct: 961 NVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYYLITHNPISLTKYLQLDNLKQIFQV 1020
Query: 1021 LKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY------------FFFENVC 1080
LKYYLMDENGGIFNSDPC NIVFNTFNLNWHFLH NYHNNY F FENVC
Sbjct: 1021 LKYYLMDENGGIFNSDPCINIVFNTFNLNWHFLHDNYHNNYCEERPTRISLGQFLFENVC 1080
Query: 1081 IAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
IAKNRPHLKSGQIIIVQVDS+VIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR
Sbjct: 1081 IAKNRPHLKSGQIIIVQVDSLVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSR 1140
Query: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR
Sbjct: 1141 SGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSR 1200
Query: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG
Sbjct: 1201 ISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTG 1260
Query: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL
Sbjct: 1261 RALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 1320
Query: 1321 GGMIPVGTGFRELAHRSRQYNNIPLETPQKKFSRGK 1328
GGMIPVGTGFRELAHRSRQ+NNIPLETPQKK G+
Sbjct: 1321 GGMIPVGTGFRELAHRSRQHNNIPLETPQKKIFEGE 1356
BLAST of PI0017263 vs. TAIR 10
Match:
ATCG00170.1 (DNA-directed RNA polymerase family protein )
HSP 1 Score: 2086.6 bits (5405), Expect = 0.0e+00
Identity = 1071/1355 (79.04%), Postives = 1164/1355 (85.90%), Query Frame = 0
Query: 1 MAERADLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQLKTLGFQQATATSISLGID 60
MAERA+LVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQ+KTLGFQQATATSISLGID
Sbjct: 1 MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID 60
Query: 61 DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
Sbjct: 61 DLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR 120
Query: 121 MTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
MTDPFNPVH+MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
Sbjct: 121 MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII 180
Query: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGILVSP--GNRMIPER 240
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSP NRM+ ER
Sbjct: 181 SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSER 240
Query: 241 IFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGLINRFITFQTQPISIRTPFTCRSTSWIC 300
IFIQTLIGRVLADDIY+G RC+ RNQD+GIGL+NR ITF TQ ISIRTPFTCRSTSWIC
Sbjct: 241 IFIQTLIGRVLADDIYIGSRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWIC 300
Query: 301 RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHIRAPSNG 360
RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEH+RAP NG
Sbjct: 301 RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNG 360
Query: 361 KIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDIIHNVTIPPKSLLLVQNDQYVESEQ 420
KIKFNEDLVHPTRTRHGHPAFLCYIDL V IESEDIIH+VTIPPKS LLVQNDQYVESEQ
Sbjct: 361 KIKFNEDLVHPTRTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQ 420
Query: 421 VIAEIRAGTYTLNLKERVRKHIYSDSEGEMHWSTDVYHAPEFTYSNVHLLPKTSHLWILS 480
VIAEIR GTYT + KERVRK+IYSDSEGEMHWSTDV HAPEFTYSNVHLLPKTSHLWILS
Sbjct: 421 VIAEIREGTYTFHFKERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILS 480
Query: 481 GGSCGCSVVPFSLYKDQDQINVHSLCVERRYISSLSVNNDKVGQKFYGPHLSGKNESGIP 540
GGSCG S++ FS++KDQDQ+N+ L ER+ ISSLSVNND+V QKF+ + + GI
Sbjct: 481 GGSCGSSLIRFSIHKDQDQMNIPFLSAERKSISSLSVNNDQVSQKFFSSDFADPKKLGIY 540
Query: 541 DYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKEQRPPSGISIE 600
DYSELN L T NL Y AIFH NSDLLAKRRRN F+I F+S+QE+EKE P SGIS+E
Sbjct: 541 DYSELNGNLGTSHYNLIYSAIFHENSDLLAKRRRNRFLIPFQSIQEQEKEFIPQSGISVE 600
Query: 601 IPINGIFRRNSILAYFDDPQYRRNSSGITKYGTIGVHSILKKEDLID------------- 660
IPINGIFRRNSI A+FDDP+YRR SSGI KYGT+ SI++KED+I+
Sbjct: 601 IPINGIFRRNSIFAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKIKTKYEM 660
Query: 661 --GSIFFIPEEVHILPESSSIMVRNNSIIGVATRLTLSIRSRVGGLVRVEKKKKRIELKI 720
FFIPEEVHILPESS+IMV+N SIIGV TRLTL+IRS+VGGL+RVEKKKKRIELKI
Sbjct: 661 KVDRFFFIPEEVHILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVEKKKKRIELKI 720
Query: 721 FSGDIHFPGEMDKISRHNGILIPPERVKKNSKKSKKSKNWIYVQWITPTKKKYFVFVRPV 780
FSGDIHFP + DKISRH+GILIPP R KKNSK+SKK KNWIYVQ ITPTKKK+FV VRPV
Sbjct: 721 FSGDIHFPDKTDKISRHSGILIPPGRGKKNSKESKKFKNWIYVQRITPTKKKFFVLVRPV 780
Query: 781 IIYELADGINLVKLFPQDLLQERDNLELRVVNYILYGNGKPIRGISGTSIQLVRTCLLLN 840
YE+AD INL LFPQDL +E+DN++LRV NYILYGNGKP RGIS TSIQLVRTCL+LN
Sbjct: 781 ATYEIADSINLATLFPQDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLN 840
Query: 841 WDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLVKSDTAYIRKRKDPSGSGLIFNNESD 900
WD K+SS+E+ RA FVEVST GL+++F+RI LVKS +YIRKR + SGLI
Sbjct: 841 WD---KNSSLEEVRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSGLI-----S 900
Query: 901 RTNINPFFSISSKTRV-PQSPSQNQGTIRTLLNRNKERQSLIILSASNCLQMDLFNDVKD 960
++NPF+SIS K+ + QS QN GTIR LNRNKE QSL+ILS+SNC +M FN VK
Sbjct: 901 ADHMNPFYSISPKSGILQQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRMGPFNHVKH 960
Query: 961 YNVIKESSKKDPLISIRNSLGPLGAAPQIVNFYSFYDLITHNPISLTKYLQLANLKQTFQ 1020
+NVI +S KK+ LI+I+NS GPLG A I NFYSF L+T+N ISL KY QL NLK FQ
Sbjct: 961 HNVINQSIKKNTLITIKNSSGPLGTATPISNFYSFLPLLTYNQISLIKYFQLDNLKYIFQ 1020
Query: 1021 VLKYYLMDENGGIFNSDPCSNIVFNTFNLNWHFLHHNYHNNY------------FFFENV 1080
+ YL+DENG I N DP SN+V N F LNW+FLH NYH+NY FF ENV
Sbjct: 1021 KINSYLIDENGIILNLDPYSNVVLNPFKLNWYFLHQNYHHNYCEETSTIISLGQFFCENV 1080
Query: 1081 CIAKNRPHLKSGQIIIVQVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKS 1140
CIAK PHLKSGQ++IVQ DS VIRSAKPYLAT GA VH HY EILYEGDTLVTFIYEKS
Sbjct: 1081 CIAKKEPHLKSGQVLIVQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKS 1140
Query: 1141 RSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQS 1200
RSGDITQGLPKVEQVLEVRSIDSIS++LEKRI+GWN+ ITRILGIPWGFLIGAELTIVQS
Sbjct: 1141 RSGDITQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQS 1200
Query: 1201 RISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERT 1260
RISLVNKIQKVYRSQGV+IHNRHIEIIVRQITSKVLVSE+GMSNVF PGELIGLLRAERT
Sbjct: 1201 RISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERT 1260
Query: 1261 GRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVV 1320
GRALEEAICYRAVLLGIT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+GLKENVV
Sbjct: 1261 GRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1320
Query: 1321 LGGMIPVGTGFRE-LAHRSRQYNNIPLETPQKKFS 1325
LGG+IP GTGF + L H SRQ+ NI LE K +
Sbjct: 1321 LGGVIPAGTGFNKGLVHCSRQHTNIILEKKTKNLA 1347
BLAST of PI0017263 vs. TAIR 10
Match:
AT3G57660.1 (nuclear RNA polymerase A1 )
HSP 1 Score: 74.7 bits (182), Expect = 6.2e-13
Identity = 70/252 (27.78%), Postives = 109/252 (43.25%), Query Frame = 0
Query: 126 NPVHIMSFSGARG---NASQVHQLVGMRGLMSDPQGQMID---LP--------------I 185
N + +M+ SGA+G N Q+ +G + L +M+ LP I
Sbjct: 936 NCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFI 995
Query: 186 QSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHI------VVRRTD 245
GL EY C R+G+VDTAV+TS +GYL R L++ ++ + VR D
Sbjct: 996 SDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDAD 1055
Query: 246 CGTIR------GILVSPGN--RMIPERIFIQTLIGRVLADDIYMGPRCIGVRNQDIGIGL 305
I+ G+ V + E Q ++ + ++D+ G D+ I L
Sbjct: 1056 GSIIQFQYGEDGVDVHRSSFIEKFKELTINQDMVLQKCSEDMLSGASSY---ISDLPISL 1115
Query: 306 INRFITF-QTQPISIRTPFTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPG 343
F + P++ R + +L +S L + GE VG++A QS+GEP
Sbjct: 1116 KKGAEKFVEAMPMNERIASKFVRQEELLKLV--KSKFFASLAQPGEPVGVLAAQSVGEPS 1175
BLAST of PI0017263 vs. TAIR 10
Match:
AT5G60040.1 (nuclear RNA polymerase C1 )
HSP 1 Score: 65.1 bits (157), Expect = 4.9e-10
Identity = 55/217 (25.35%), Postives = 93/217 (42.86%), Query Frame = 0
Query: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR-----RTD 224
+ ++ GL+ TE+ G R+G+VDTAV+T+ GY++RRL++ ++ ++V R
Sbjct: 835 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNA 894
Query: 225 CGTIRGILV------------SPGNRMIPERIFIQT-LIGRVLADDIYMGPRCIG----- 284
G I G + R+F++ + Y+ +
Sbjct: 895 SGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEE 954
Query: 285 --VRNQ------DIGIGLINRFITF-------QTQPISIRTPFTCRSTSWICRLCYGRSP 344
VR+ D + + F++ Q + + T + ++C R
Sbjct: 955 ELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFR-- 1014
BLAST of PI0017263 vs. TAIR 10
Match:
AT5G60040.2 (nuclear RNA polymerase C1 )
HSP 1 Score: 65.1 bits (157), Expect = 4.9e-10
Identity = 55/217 (25.35%), Postives = 93/217 (42.86%), Query Frame = 0
Query: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVR-----RTD 224
+ ++ GL+ TE+ G R+G+VDTAV+T+ GY++RRL++ ++ ++V R
Sbjct: 852 VANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNA 911
Query: 225 CGTIRGILV------------SPGNRMIPERIFIQT-LIGRVLADDIYMGPRCIG----- 284
G I G + R+F++ + Y+ +
Sbjct: 912 SGCILQFTYGDDGMDPALMEGKDGAPLNFNRLFLKVQATCPPRSHHTYLSSEELSQKFEE 971
Query: 285 --VRNQ------DIGIGLINRFITF-------QTQPISIRTPFTCRSTSWICRLCYGRSP 344
VR+ D + + F++ Q + + T + ++C R
Sbjct: 972 ELVRHDKSRVCTDAFVKSLREFVSLLGVKSASPPQVLYKASGVTDKQLEVFVKICVFR-- 1031
BLAST of PI0017263 vs. TAIR 10
Match:
AT4G35800.1 (RNA polymerase II large subunit )
HSP 1 Score: 53.1 bits (126), Expect = 1.9e-06
Identity = 31/87 (35.63%), Postives = 45/87 (51.72%), Query Frame = 0
Query: 1236 EAICYRAVLLGITKASLNTQSF--ISEASFQETARVLAKAALRGRIDWLRGLKENVVLGG 1295
+ + YR L+ IT+ +N + SF+ET +L AA D LRG+ EN++LG
Sbjct: 1394 DTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQ 1453
Query: 1296 MIPVGTGFRELAHRSRQYNN-IPLETP 1320
+ P+GTG EL N I L+ P
Sbjct: 1454 LAPIGTGDCELYLNDEMLKNAIELQLP 1480
HSP 2 Score: 51.6 bits (122), Expect = 5.6e-06
Identity = 24/63 (38.10%), Postives = 42/63 (66.67%), Query Frame = 0
Query: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR 224
++++ GL+ E+ G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+ GT+R
Sbjct: 819 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 878
Query: 225 GIL 228
L
Sbjct: 879 NSL 879
HSP 3 Score: 46.6 bits (109), Expect = 1.8e-04
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 0
Query: 311 LVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGV 344
LV GE +G +A QSIGEP TQ+TL TFH GV
Sbjct: 1077 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1109
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q4VZP3 | 0.0e+00 | 95.94 | DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P... | [more] |
B1NWE0 | 0.0e+00 | 83.37 | DNA-directed RNA polymerase subunit beta'' OS=Manihot esculenta OX=3983 GN=rpoC2... | [more] |
Q49L08 | 0.0e+00 | 82.83 | DNA-directed RNA polymerase subunit beta'' OS=Eucalyptus globulus subsp. globulu... | [more] |
Q0ZJ30 | 0.0e+00 | 83.62 | DNA-directed RNA polymerase subunit beta'' OS=Vitis vinifera OX=29760 GN=rpoC2 P... | [more] |
B1A925 | 0.0e+00 | 82.89 | DNA-directed RNA polymerase subunit beta'' OS=Carica papaya OX=3649 GN=rpoC2 PE=... | [more] |
Match Name | E-value | Identity | Description | |
A0A249RXP5 | 0.0e+00 | 95.88 | DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. agrestis OX=21... | [more] |
A0A249RYY9 | 0.0e+00 | 95.88 | DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. dudaim OX=203423... | [more] |
A0A249RYA1 | 0.0e+00 | 95.88 | DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. conomon OX=3657 ... | [more] |
A0A249RYE7 | 0.0e+00 | 95.88 | DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo var. makuwa OX=119469... | [more] |
G3ETX5 | 0.0e+00 | 95.88 | DNA-directed RNA polymerase subunit beta'' OS=Cucumis melo subsp. melo OX=412675... | [more] |
Match Name | E-value | Identity | Description | |
YP_004841773.1 | 0.0e+00 | 95.88 | RNA polymerase beta'' subunit [Cucumis melo subsp. melo] >YP_009860063.1 RNA pol... | [more] |
QJF46373.1 | 0.0e+00 | 95.88 | RNA polymerase beta'' subunit [Cucumis melo] >QRW36545.1 RNA polymerase beta'' s... | [more] |
QHB75953.1 | 0.0e+00 | 96.24 | RNA polymerase beta II subunit [Cucumis melo subsp. melo] | [more] |
ASY96752.1 | 0.0e+00 | 95.80 | RNA polymerase beta'' subunit [Cucumis melo var. momordica] >ASY96926.1 RNA poly... | [more] |
YP_009346475.1 | 0.0e+00 | 95.94 | RNA polymerase beta' subunit [Cucumis x hytivus] >AOW71085.1 RNA polymerase beta... | [more] |